These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 758 fasta sequence [CCGCCCACGCGTCCGGCACGAACGATATCTAT--ATATATACAAATTAATAGATAGTGGAACACACAATACTTAACT--AAAAAAAAAACAAAGAAAACAAAGGATATAGCTAGGGGCTTACTCTAATTGTACTGGGACTGTGCACACACTGCGGGAAGGACTCTTG-AGGCAGCGAAGGATATTGAGCTGCATT-ACAAAACTCTCTCAAACACACATGCAAACACAAAGATTGGGTAACTTATTGAATGTTTGAGGGACGGATTCGGCGGTGAAATGGATCACTTTCCAAAGAATCCGCGAAATGTCTACACAAAAACACAGCGTTG----GGGTGTGGGTGTGATATGGTAAATTTTACAAGCCGGAAAAAATGATACGAATTTGCACCGTGTATTTGCACACCTAC---TACTACTACTACTACTACCCGTTTCTTTCCGGTTTATTTTAGATAGCATGTAGAGCATATGTAGTTCGAACGATATCTGCACGTTTTTTCTGCAATACGACGCACGACGCACACAGTGGATAGGCATCATCACCCTATGGAAAGGGTTTACGAAGAGATATATACATAGATAGAGAGAGAGAGAGAGAGAGCAAGAGCACACAGTGACGTGACGTGTAACACGGTGCAACGATAGATTAGCGTTAGAAAGTTTAAAAACATTCACAGAAGCAAAAAATAAGCAAAATCCAACGCGCACCCCCCTTTTTCGGAAACTTTCCTTCCGCAATTTTTCCTTCCTGGTCCTGGATTTGAAATA] [+] EMBL BM583753 [CCGCCCACGCGTCCGGCACGAACGATATCTAT ATATATACAAATTAATAGATAGTGGAACACACAATACTTAACT AAAGAAACAAAGAAAACAAAGGATATAGCTAGGGGCTTACTCTAATTGTACTGGGACTGTGCACACACTGCGGGAAGGACTCTTG AGGCAGCGAAGGATATTGAGCTGCATT ACAAAA CTCTCAGACACACATGCAAACACAAAGAATGGGTAACTTATTGAATGTTTGAGGGACGGATTCGGCGGTGAAATGGATCCCTTTCCAAAGAATCCGCGAAATGTCTACACAAAAACACAGCGTTG GGGTGTGGGTGTGATATGGTAAATTTTACAAGCCGGAAAAAAGGATACGAATTTGCACCGTGTATTTGCACAC C TACTACTACTACTACTACCCGTTTCTTTCCGGTTTATTTTAGATAGTATGTAGAGCTTATGTAGTTCGAACGATATCTGCACGTTTTTTCTGCAATACGACGCACGACGCACACAGTGGATA ] [+] EMBL BX619769 [ ACGATATCTATACATATATACAAATTAATAGATAGTGGAACACACAATACTTAACT AAAAAAAAAACAAAGAAAACAAAGGATATAGCTAGGGGCTTACTCTAATTGTACTGGGACTGTGCACACACTGCGGGAAGGACTCTTGAAGGCAGCGAAGGATATTGAGCTGCATT ACAAAACTCTCCCAAACACACAAGCAAACACAAAGATTGGGTAACTTATTGAATGTTTGAGGGACGGATTCGGCGGTGAAATGGATCACTTTCCAAAGAATCCGCGAAATGTCTACACAAAAACACAGCGTT GGGTGTGGGTGTGATATGGTAAATTTTACAAGCCGGAAAAAATGATACGAATTTGCACCGTGTATTTGCGCACCTAC TACTACCACTACTACTACCCGTTTCTTTCCGGTTTATTTTAGATAGCATGTAGAGCATAT ] [+] EMBL BM600841 [ ccgGGAACACACAATACTTAACTAAAAAAAAAAAACAAAGAAAACAAAGGATATAGCTAGGGGCTTACTCTAATTGTACTGGGACTGTGCACACACTGCGGGAAGGACTCTTG AGGCAGCGAAGGATATTGAGCTGCATTGAAAAAACTCTCTCAAACACACATGCAAACACAAAGATTGGGTAACTGATTGAATGTTTGAGGGACGGATTCGGCGGTGAAATGGATCACTTTCCAAAGAATCCGCGAAATGTCTACACAAAAACACAGCATTGATGTGTGTGTGGGTGTGATATGGTAAATTTTACAAGCCGGAAAAAATGATACGAATTTGCACCGTGTATTTGCACACCTACTATTACTACTACTACTACTACCCGTTTCTTTCCGGTTTATTTTAGATAGCATGTAGAGCATATGTAGTTCGAACGATATCTGCACGTTTTTTCTGCAATACGACGCACGACGCACACAGTGGATAGGCATCATCACCCTATGGAAAGGGTTTACGAAGAGATATATACATAGATAGAGAGAGAGAGAGAGAGAGCAAGAGCACACAGTGACGTGACGTGTAACACGGTGCAACGATAGATTAGCGTTAGAAAGTTTAAAAACATTCACAGAAGCAAAAAATAAGCAAAATCCAACGCGCACCCCCCTTTTTCGGAAACTTTCCTTCCGCAATTTTTCCTTCCTGGTCCTGGATTTGAAATA] consensusID : consensus_7203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence [CCGCCCACGCGTCCGGTCGACTGGTACGATCGGTTCGTCTCGCTGGTGAGTCTTATGTACAAGAAGTAGAGTGGAACTGGGTGGTGAGAACGGAGAGAATGGGGGGAAGGAAAAGGGAACACGATTACAAACGACAAACGACGCGTGTCGCGAATGGAAAATGTGGAAACACCAATCCTATTAAGGGGGGAAACAAACGAATGTTAGGGATGATAGCCAGTGTTAGGCCGACCCCCCCTATGTTTGTGTGCTGTTCGAGTTTTCCGTTTCAATGTTTCATACTTTTCTCTTTTAAATGTATGAGAGTTTTCGATATAAACAACTAAAATTAGAAAATGCGCTTGAGTTAAAACGAGTTTTGCTTGTTTTTTTTTGGCTCACCACTGTACAGTTCCTTTCGTCTTTGTATGTGAACGTTAGGCAAAGGTCTGGAGAGGCATCTCTCGCATCTGGCTTATATATCGTTAGGGGATAAA---AAATAGTACGACGCAGAGGAGGGGGGAGAAATGCGATGGAGAACTTTTAGCTATGCGCGATTATTGAAAAGTAAGAAACGTTTGTACTCCCGTCCCACGGCGGGATGAGATTGGCGATGAAATGACAAAAAGGATTCGATTCGAATCGGCACGAACGATATCTATATATATATACAAATTAATAGATAGTGGAACACACAATACTT] [+] EMBL BM612769 [CCGCCCACGCGTCCGGTCGACTGGTACGATCGGTTCGTCTCGCTGGTGAGTCTTATGTACAAGAAGTAGAGTGGAACTGGGTGGTGAGAACGGAGAGAATGGGGGGAAGGAAAAGGGAACACGATTACAAACGACAAACGACGCGTGTCGCGAATGGAAAATGTGGAAACACCAATCCTATTAAGGGGGGAAACAAACGAATGTTAGGGATGATAGCCAGTGTTAGGCCGACCCCCCCTATGTTTGTGTGCTGTTCGAGTTTTCCGTTTCAATGTTTCATACTTTTCTCTTTTAAATGTATGAGAGTTTTCGATATAAACAACTAAAATTAGAAAATGCGCTTGAGTTAAAACGAGTTTTGCTTGTTTTTTTTTGGCTCACCACTGTACAGTTCCTTTCGTCTTTGTATGTGAACGTTAGGCAAAGGTCTGGAGAGGCATCTCTCGCATCTGGCTTATATATCGTTAGGGGATAAA AAATAGTACGACGCAGAGGAGGGGGGAGAAATGCGATGGAGAACTTTTAGCTATGCGCGATTATTGAAAAGTAAGAAACGTTTGTACTCCCGTCCCACGGCGGGATGAGATTGGCGATGAAATGACAAAAAGGATTCGA ] [+] EMBL BM576639 [ ccgGAGGCATCTCTCGCATCTGGCTTATATATCGTTAGGGGATAAAAAGAAATAGTACGATTCAGAGGAGGGGGGAG TGCGATGGAGAACTTTTAGCTATGCGCGATTATTGAAAAGTAAGAAACGTTTGTACTCCCGTCCCACGGCGGGATGAGATTGGCGATGAAATGACAAAAAGGATTCGATTCGAATCGGCACGAACGATATCTATATATATATACAAATTAATAGATAGTGGAACACACAATACTT] consensusID : consensus_7203#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [AGGCAGAATCGGCACGNTGATCGACTGGAACAATACGAGCGACTGGTACAAGGCGATGTACACCGTGATCTGCTGCTTTCCGCACACGTTCAAGGACATGGTGCAGAGCTTCCTGCAGGAGCACGTGGACAGCAGCACGGACAAGGCGAAGGAGATGATCGGCGAAAGCTTGGCGCGCCTGAACCAGATCGAGTTTGCGACTGGTACGATCGGTTCGTCTCGCTGGTGAGTCTTATGTACAAGAAGTAGGAGTGGAACTGGGTGGTCAGAACAGCAGAGAATGGGCGGAAGGAACAAGGGAACACGTTTACAAAGCGACAAACGACGCGTGTCGCGAATGGACAAATGTGCAAACACCAAGTCCTACTGAGGGGGGAAACAAAGCGAATGTTAGGGA] [+] EMBL BX468846 [AGGCAGAATCGGCACGNTGATCGACTGGAACAATACGAGCGACTGGTACAAGGCGATGTACACCGTGATCTGCTGCTTTCCGCACACGTTCAAGGACATGGTGCAGAGCTTCCTGCAGGAGCACGTGGACAGCAGCACGGACAAGGCGAAGGAGATGATCGGCGAAAGCTTGGCGCGCCTGAACCAGATCGAGTTTGCGACTGGTACGATCGGTTCGTCTCGCTGGTGAGTCTTATGTACAAGAAGTAGGAGTGGAACTGGGTGGTCAGAACAGCAGAGAATGGGCGGAAGGAACAAGGGAACACGTTTACAAAGCGACAAACGACGCGTGTCGCGAATGGACAAATGTGCAAACACCAAGTCCTACTGAGGGGGGAAACAAAGCGAATGTTAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7203#1 CCGCCCACGCGTCCGGT-CGACTGGTACG---ATCGGTTCGTCTCGCTGGTGAGTCTTAT 56 consensus_7203#2 ------------------------------------------------------------ consensus_7203#0 CCGCCCACGCGTCCGGCACGAACGATATCTATATATATACAAATTAATAGATAGTGGAAC 60 consensus_7203#1 GTACAAGAAGTAGAGTGGAACTGGGTGGTGAGAACGGAGAGAATGGGGGGAAG------- 109 consensus_7203#2 ------------------------------------------------------------ consensus_7203#0 ACACAATACTTAACTAAAAAAAAAACAAAGAAAACAAAGGATATAGCTAGGGGCTTACTC 120 consensus_7203#1 -----GAAAAGGGAACACGATTACAAACGACAAACGACGCGTGTCGCGAATGGAAAATGT 164 consensus_7203#2 --------------------------------------------------------AGGC 4 consensus_7203#0 TAATTGTACTGGGACTGTGCACACACTGCGGGAAGGACTCTTGAGGC-AGCGAAGGATAT 179 * consensus_7203#1 GGAAACACC------AATCCTATTAAGGGGGGAAACAAA--CGAATGTTAGGGATGATAG 216 consensus_7203#2 AGAATCGGC------ACGNTGATCGACTGGAACAATA----CGAGCGACTGGTACAA--G 52 consensus_7203#0 TGAGCTGCATTACAAAACTCTCTCAAACACACATGCAAACACAAAGATTGGGTAACTTAT 239 ** * * * * * * ** * consensus_7203#1 CCAGTGTT---AGGCCGACCCCCCCTATGTTTGTGTGC-TGTTCGAGTTTTCCGTTTCAA 272 consensus_7203#2 GCGATGT----ACACCGTGATCTGCTGC-TTTCCGCACACGTTCAAGGAC---------A 98 consensus_7203#0 TGAATGTTTGAGGGACGGATTCGGCGGTGAAATGGATCACTTTCCAAAGAATCCGCGAAA 299 *** ** * * * * *** * * consensus_7203#1 TGT-TTCATACTTTTCTCTTTTAAATGTATGAGAGTTTT-CGATATAAACAACTAAAATT 330 consensus_7203#2 TGG-TGCAGAGCTTCCTGC---AGGAGCACGTGGACAG--CAGCACGGACAAGGCGAAGG 152 consensus_7203#0 TGTCTACACAAAAACACAGCGTTGGGGTGTGGGTGTGATATGGTAAATTTTACAAGCCGG 359 ** * ** * * * * * * consensus_7203#1 AGAAAATGCGCTTGAGTTAAAACGAGT-TTTGCTTGTTTTTTTTTGGC-TCACCACTGTA 388 consensus_7203#2 AGATGATCGGCGAAAGCTTGG-CGCGC-CTGAACCAGATCG----AGT-TTGCGACTGGT 205 consensus_7203#0 AAAAAATGATACGAATTTGCACCGTGTATTTGCACACCTACTACTACTACTACTACTACC 419 * * ** * * ** * * * * *** consensus_7203#1 CAGTTCCTTTCGTCTT--TGTATGTGA-ACGTTAGGCAAAGGTCTGGAGAGGCATCTCT- 444 consensus_7203#2 ACGATCGGTTCGTCTC--GCTG-GTGA-GTCTTATGTACAAGAAGTAGGAG--------- 252 consensus_7203#0 CGTTTCTTTCCGGTTTATTTTAGATAGCATGTAGAGCATATGTAGTTCGAACGATATCTG 479 ** * ** * * * * * * * * ** consensus_7203#1 CGCATCTGGCTTATA-TATCGT-TAGGGGATAAAAAATAGTACGACGCAGAGGAGGGGGG 502 consensus_7203#2 TGGAACTGG--------GTGGT-CAGAACAGCAGAGAATGGGCGG----AAGGAACAAGG 299 consensus_7203#0 CACGTTTTTTCTGCAATACGACGCACGACGCACACAGTGGATAGGCATCATCACCCTATG 539 * * * * * consensus_7203#1 AGAAATGCGATGGAGAACTTTTAGCTATGCGCGATTATTGAAAAGTAAGAAACGTTTGTA 562 consensus_7203#2 GAACACGTT-TACAAAGCGACAAACGACGCGTG----TCGCGAATGGACAAATGTGCAAA 354 consensus_7203#0 GAAAGGGTTTACGAAGAGATATATACATAGATAGAGAGAGAGAGAGAGAGAGCAAGAGCA 599 * * * * * * * * * consensus_7203#1 CTC----------CC-GTCCCACGGCGGGATGA--GATTGGCGATGAAATGACAAAAAGG 609 consensus_7203#2 CAC----------CAAGTCCTACTGAGGGGGGA--AACAA---AGCGAATGTTAGGGA-- 397 consensus_7203#0 CACAGTGACGTGACGTGTAACACGGTGCAACGATAGATTAGCGTTAGAAAGTTTAAAAAC 659 * * * ** ** * * ** * ** * * consensus_7203#1 ATTCGATTCGAATCGGCACGAACGATATCTATATATATATACAAATTAATAGATAGTGGA 669 consensus_7203#2 ------------------------------------------------------------ consensus_7203#0 ATTCACAGAAGCAAAAAATAAGCAAAATCCA-ACGCGCACCCCCCTTTTTCGGAAACTTT 718 consensus_7203#1 ACACACAATACTT--------------------------- 682 consensus_7203#2 ---------------------------------------- consensus_7203#0 CCTTCCGCAATTTTTCCTTCCTGGTCCTGGATTTGAAATA 758 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||