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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1991 fasta sequence
[CCGCGGACGCGTGGGGCAAACGATCGTGCGTGACAAACCAAAAAAGAACAGGGAAAACCTGGTCCAGGTGGGCGTGTACTGCTGTCATGTTGTGTGATCGCAATTGAGGGGAATTTTGTGTGCGCCTTGGCATCGGAACGGGCAAAACGATGGCGTTCTTCTTTAACTTTGTCGCCATCAGCTTCTTCCTGTACCACCTGGTGCGGCTGATAATGTGGGCCGTGCTGGATTCGGACATCGAACTGTTCTTTCTCTCCAAATTGGGCAGACCCATCTCCTCACTTCGGGGGAAAGTGGTATGGATTACTGGAGCATCCAGCGGCATCGGGCGCGATCTGGCCATTGCACTGGCCCGGCAAGGTGTTAAGCTGTGCATTTCCGCACGTAACATTTCCGAACTGCTGAAGGTGAAGCAAGCTTGTATAGCACAATCAAACGGAAGTCTCGGGCCGAACGATGTGTACGTGCTAGAGATGGATATGCTCCATCTGAACCACCACAACGATTACTTCAACATGGTGCTGGACCACTTCAAAACGGTCGACATTCTGGTGAACAATGCGGGACGCTCGCAGCGGGCCGAGTGGGGCTCGATCAACATCAAGGTCGACCGGGAGCTGTTCGAGCTGGATGTGTTTGCCGTGATCAATCTGTCCCGTGTGGCGCTCAACTTTTTCGCCCGCAACTCGATGAAGGGCCACCTGGTGGTGACGAGCAGTACGGCGGGCCTTATCGGGGCCCCGAACTCCGGTACCTACACCGGTGCCAAGCATGCGCTCCATGGCTACTTTGAAGCACTAAGAAACGAATACCCCAACGTGCACGTTACGATGTTCTGTNCCGGACCGACGGNCACGAACTTTCTGCAGGAGTGCTTCACCGATACTNCCGGCGCAAAATACAACCAAACCGTGCAGCCGACCGATCGGCGTATGACAAGCGAACGATGCGGTCATCTGTACGCATTGGCCATTGCCAACAAGACCCACCTGAGCTGGGTTGGAACGTTCCCGATCAACTTTCTGCTGTACATTGGCTGCTACTACCCGAACTTGAAGCGAGTCCTGCTGAAAATTGTTGGCATGGAGCGTTTGCAGCGTGTTCGCGACAGTCGGTAAATTGGCGCTAATGAATTGAAATAAAGCAGAAAAAGCCTACTGGGTTGCAGCAAAACAGCGCACACACACATACATCGGGCATCGGGACATGGAGCGGCCACCCAATGTTTTACATTCCAAAGTGCCTAATACACGCGTAACTCTCACGTGTCCTAAGTTCATACAGCATCAACTTCGCCGCATCCAATCCACACACACGTTTCCAGAACGAAGCAGCATTTTACTGGTCAATTATTTAAAGTGTTTTTTTTTTCTATCTTTCTTTAGTACAATTTACACTATCATTCTCGTTTACCACGATATTAGCGGATGTGTTGTCTTTTTTCTACTTAAATTATTTAAGCACTATTATTAACTTTTTCTTGTAATCGTGCATCGCATTTAGGTTGTAGCATTATAATTTTTACATGTTTTTTGTTTTGTTTGTTGTAAAGTACCGCTTACACAATGCTTTTAGATGAAATTATTTAATACTATGCTCTTATGCTCTTGTTTCTCGACAGAGTTTCACCACACATACGTCCTCTTTTTCACTCTCGTAGCCATTATTTTCAACTATTTTGTGAGTGTTGTGATTTTCTTTCAAGTTACAATAAATGTCCACACGCCATCAGTTATACTTTCCATATCGCTTAGATACTAGCATTTTTATTAAATCAAGTTTTTCTTTCCATTTTCATGTTCATTTTCTTCCTCTCTCTCTCTCTCTCTCTCGCATCTTGGTGTGGTACGCAGGAGAAAGAGGATTGCCATGTCCCCCACCTTTCACACAAACCGTGACGTCTCGCGCCCCGGGTCTGGTCTTTCTTTTCACAGTTGGAACTTTTTCCATCGTCACTCAATAATTCCTAACGCGCAAGTGAGAAATTTAAT]
[+] EMBL BM630086 [CCGCGGACGCGTGGGGCAAACGATCGTGCGTGACAAACCAAAAAAGAACAGGGAAAACCTGGTCCAGGTGGGCGTGTACTGCTGTCATGTTGTGTGATCGCAATTGAGGGGAATTTTGTGTGCGCCTTGGCATCGGAACGGGCAAAACGATGGCGTTCTTCTTTAACTTTGTCGCCATCAGCTTCTTCCTGTACCACCTGGTGCGGCTGATAATGTGGGCCGTGCTGGATTCGGACATCGAACTGTTCTTTCTCTCCAAATTGGGCAGACCCATCTCCTCACTTCGGGGGAAAGTGGTATGGATTACTGGAGCATCCAGCGGCATCGGGCGCGATCTGGCCATTGCACTGGCCCGGCAAGGTGTTAAGCTGTGCATTTCCGCACGTAACATTTCCGAACTGCTGAAGGTGAAGCAAGCTTGTATAGCACAATCAAACGGAAGTCTCGGGCCGAACGATGTGTACGTGCTAGAGATGGATATGCTCC ]
[+] EMBL BM643790 [ TGCGCCTTGGCATCGGAACGGGCAAAACGATGGCGTTCTTCTTTAACTTTGTCGCCATCAGCTTCTTCCTGTACCACCTGGTGCGGCTGATAATGTGGGCCGTGCTGGATTCGGACATCGAACTGTTCTTTCTCTCCAAATTGGGCAGACCCATCTCCTCACTTCGGGGGAAAGTGGTATGGATTACTGGAGCATCCAGCGGCATCGGGCGCGATCTGGCCATTGCACTGGCCCGGCAAGGTGTTAAGCTGTGCATTTCCGCACGTAACATTTCCGAACTGCTGAAGGTGAAGCAAGCTTGTATAGCACAATCAAACGGAAGTCTCGGGCCGAACGATGTGTACGTGCTAGAGATGGATATGCTCCATCTGAACCACCACAACGATTACTTCAACATGGTGCTGGACCACTTCAAAACGGTCGACATTCTGGTGAACAATGCGGGACGCTCGCAGCGGGCCGAGTGGGGC ]
[+] EMBL BX625467 [ GATGGCGTTCTTCTTTAACTTTGTCGCCATCAGCTTCTTCCTGTACCACCTGGTGCGGCTGATAATGTGGGCCGTGCTGGATTCGGACATCGAACTGTTCTTTCTCTCCAAATTGGGCAGACCCATCTCCTCACTTCGGGGGAAAGTGGTATGGATTACTGGAGCATCCAGCGGCATCGGGCGCGATCTGGCCATTGCACTGGCCCGGCAAGGTGTTAAGCTGTGCATTTCCGCACGTAACATTTCCGAACTGCTGAAGGTGAAGCAAGCTTGTATAGCACAATCAAACGGAAGTCTCGGGCCGAACGATGTGTACGTGCTAGAGATGGATATGCTCCATCTGAACCACCACAACGATTACTTCAACATGGTGCTGGACCACTTCAAAACGGTCGACATTCTGGTGAACAATGCGGGACGCTCGCAGCGGGCCGAGTGGGGCTCGATCAACATCAAGGTCGACCGGGAGCTGTTCGAGCTGGATGTGTTTGCCGTGATCAATCTGTCCCGTGTGGCGCTCAACTTTTTCGCCCGCAACTCGATGAAGGGCCACCTGGTGGTGACGAGCAGTACGGCGGGCCTTATCGGGGCCCCGAACTCCGGTACCTACACCGGTGCCAAGCATGCGCTCCATGGCTACTTTGAAGCACTAAGAAACGAATACCCCAACGTGCACGTTACGATGTTCTGTNCCGGACCGACGGNCACGAACTTTCTGCAGGAGTGCTTCACCGATACTNCCGGCGCAAAATACAACCAAACCGTGCAGCCG ]
[+] EMBL BM642397 [ ccgGCACTAAGAAACGAATACCCCAACGTGCACGTTACGATGTTCTGTCCCGGACCGACGGCCACGAACTTTCTGCAGGAGTGCTTCACCGATACTCCCGGCGCAAAATACAACCAAACCGTGCAGCCGACCGATCGGCGTATGACAAGCGAACGATGCGGTCATCTGTACGCATTGGCCATTGCCAACAAGACCCACCTGAGCTGGGTTGGAACGTTCCCGATCAACTTTCTGCTGTACATTGGCTGCTACTACCCGAACTTGAAGCGAGTCCTGCTGAAAATTGTTGGCATGGAGCGTTTGCAGCGTGTTCGCGACAGTCGGTAAATTGGCGCTAATGAATTGAAATAAAGCAGAAAAAGCCTACTGGGTTGCAGCAAAACAGCGCACACACACATACATCGGGCATCGGGACATGGAGCGGCCACCCAATGTTTTACATTCCAAAGTGCCTAATACACGCGTAACTCTCACGTGTCCTAAGTTCATACAGCATCAACTTCGCCGCATCCAATCCACACACACGTTTCCAGAACGAAGCAGCATTTTACTGGTCAATTATTTAAAGTGTTTTTTTTTTCTATCTTTCTTTAGTACAATTTACACTATCATTCTCGTTTACCACGATATTAGCGGATGTGTTGTCTTTTTTCTACTTAAATTATTT ]
[+] EMBL BM655830 [ CCGCACACACGTTTCCAGAACGAAGCAGCATTTTACTGGTCAATTATTTAAAGTGTTTTTTTTTTCTATCTTTCTTTAGTACAATTTACACTATCATTCTCGTTTACCACGATATTAGCGGATGTGTTGTCTTTTTTCTACTTAAATTATTTAAGCACTATTATTAACTTTTTCTTGTAATCGTGCATCGCATTTAGGTTGTAGCATTATAATTTTTACATGTTTTTTGTTTTGTTTGTTGTAAAGTACCGCTTACACAATGCTTTTAGATGAAATTATTTAATACTATGCTCTTATGCTCTTGTTTCTCGACAGAGTTTCACCACACATACGTCCTCTTTTTCACTCTCGTAGCCATTATTTTCAACTATTTTGTGAGTGTTGTGATTTTCTTTCAAGTTAC ]
[+] EMBL AGA284040 [ TTTTTTGTAAAGTACCGCTTACACAATGCTTTTAGATGAAATTATTTAATACTATGCTCTTATGCTCTTGTTTCTCGACAGAGTTTCACCACACATACGTCCTCTTTTTCACTCTCGTAGCCATTATTTTCAACTATTTTGTGAGTGTTGTGATTTTCTTTCAAGTTACAATAAATGTCCACACGCCATCAGTTATACTTTCCATATCGCTTAGATACTAGCATTTTTATTAAATCAAGTTTTTCTTTCCATTTTCATGTTCATTTTCTTCCTCTCTCTCTCTCTCTCTCTCGCATCTTGGTGTGGTACGCAGGAGAAAGAGGATTGCCATGTCCCCCACCTTTCACACAAACCGTGACGTCTCGCGCCCCGGGTCTGGTCTTTCTTTTCACAGTTGGAACTTTTTCCATCGTCACTCAATAATTCCTAACGCGCAAGTGAGAAATTTAAT]
consensusID : consensus_7218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[ATCNCCCGAGGTAGCAAACGATGGCGTTCTTCTTTAACTTTGTCGCCATCAGCTTCTTCCTGTACCACCTGGTGCGGCTGATAATGTGGGCCGTGCTGGATTCGGACATCGAACTGTTCTTTCTCTCCAAATTGGGCAGACCCATCTCCTCACTTCGGGGGAAAGTGGTATGGATTACTGGAGCATCCAGCGGCATCGGGCGCGATCTGGCCATTGCACTGGCCCGGCAAGGTGTTAAGCTGTGCATTTCCGCACGTAACATTTCCGAACTGCTGAAGGTGAAGCAAGCTTGTATAGCACAATCAAACGGAAGTCTCGGGCCGAACGATGTGTACGTGCTAGAGATGGATATGCTCCATCTGAACCACCACAACGATTACTTCAACATGGTGCTGGACCACTTCAAAACGGTCGACATTCTGGTGAACAATGCGGGACGCTCGCAGCGGGCCGAGTGGGGCTCGATCAACATCAAGGTCGACCGGGAGCTGTTTGAGCTGGATGTGTTTGC]
[+] EMBL AL694358 [ATCNCCCGAGGTAGCAAACGATGGCGTTCTTCTTTAACTTTGTCGCCATCAGCTTCTTCCTGTACCACCTGGTGCGGCTGATAATGTGGGCCGTGCTGGATTCGGACATCGAACTGTTCTTTCTCTCCAAATTGGGCAGACCCATCTCCTCACTTCGGGGGAAAGTGGTATGGATTACTGGAGCATCCAGCGGCATCGGGCGCGATCTGGCCATTGCACTGGCCCGGCAAGGTGTTAAGCTGTGCATTTCCGCACGTAACATTTCCGAACTGCTGAAGGTGAAGCAAGCTTGTATAGCACAATCAAACGGAAGTCTCGGGCCGAACGATGTGTACGTGCTAGAGATGGATATGCTCCATCTGAACCACCACAACGATTACTTCAACATGGTGCTGGACCACTTCAAAACGGTCGACATTCTGGTGAACAATGCGGGACGCTCGCAGCGGGCCGAGTGGGGCTCGATCAACATCAAGGTCGACCGGGAGCTGTTTGAGCTGGATGTGTTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7218#0 CCGCGGACGCGTGGGGCAAACGATCGTGCGTGACAAACCAAAAAAGAACAGGGAAAACCT 60
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 GGTCCAGGTGGGCGTGTACTGCTGTCATGTTGTGTGATCGCAATTGAGGGGAATTTTGTG 120
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 TGCGCCTTGGCATCGGAACGGGCAAAACGATGGCGTTCTTCTTTAACTTTGTCGCCATCA 180
consensus_7218#1 --------ATCNCCCGAGGTAGCAAA-CGATGGCGTTCTTCTTTAACTTTGTCGCCATCA 51
* * ** ***** *********************************
consensus_7218#0 GCTTCTTCCTGTACCACCTGGTGCGGCTGATAATGTGGGCCGTGCTGGATTCGGACATCG 240
consensus_7218#1 GCTTCTTCCTGTACCACCTGGTGCGGCTGATAATGTGGGCCGTGCTGGATTCGGACATCG 111
************************************************************
consensus_7218#0 AACTGTTCTTTCTCTCCAAATTGGGCAGACCCATCTCCTCACTTCGGGGGAAAGTGGTAT 300
consensus_7218#1 AACTGTTCTTTCTCTCCAAATTGGGCAGACCCATCTCCTCACTTCGGGGGAAAGTGGTAT 171
************************************************************
consensus_7218#0 GGATTACTGGAGCATCCAGCGGCATCGGGCGCGATCTGGCCATTGCACTGGCCCGGCAAG 360
consensus_7218#1 GGATTACTGGAGCATCCAGCGGCATCGGGCGCGATCTGGCCATTGCACTGGCCCGGCAAG 231
************************************************************
consensus_7218#0 GTGTTAAGCTGTGCATTTCCGCACGTAACATTTCCGAACTGCTGAAGGTGAAGCAAGCTT 420
consensus_7218#1 GTGTTAAGCTGTGCATTTCCGCACGTAACATTTCCGAACTGCTGAAGGTGAAGCAAGCTT 291
************************************************************
consensus_7218#0 GTATAGCACAATCAAACGGAAGTCTCGGGCCGAACGATGTGTACGTGCTAGAGATGGATA 480
consensus_7218#1 GTATAGCACAATCAAACGGAAGTCTCGGGCCGAACGATGTGTACGTGCTAGAGATGGATA 351
************************************************************
consensus_7218#0 TGCTCCATCTGAACCACCACAACGATTACTTCAACATGGTGCTGGACCACTTCAAAACGG 540
consensus_7218#1 TGCTCCATCTGAACCACCACAACGATTACTTCAACATGGTGCTGGACCACTTCAAAACGG 411
************************************************************
consensus_7218#0 TCGACATTCTGGTGAACAATGCGGGACGCTCGCAGCGGGCCGAGTGGGGCTCGATCAACA 600
consensus_7218#1 TCGACATTCTGGTGAACAATGCGGGACGCTCGCAGCGGGCCGAGTGGGGCTCGATCAACA 471
************************************************************
consensus_7218#0 TCAAGGTCGACCGGGAGCTGTTCGAGCTGGATGTGTTTGCCGTGATCAATCTGTCCCGTG 660
consensus_7218#1 TCAAGGTCGACCGGGAGCTGTTTGAGCTGGATGTGTTTGC-------------------- 511
********************** *****************
consensus_7218#0 TGGCGCTCAACTTTTTCGCCCGCAACTCGATGAAGGGCCACCTGGTGGTGACGAGCAGTA 720
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 CGGCGGGCCTTATCGGGGCCCCGAACTCCGGTACCTACACCGGTGCCAAGCATGCGCTCC 780
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 ATGGCTACTTTGAAGCACTAAGAAACGAATACCCCAACGTGCACGTTACGATGTTCTGTN 840
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 CCGGACCGACGGNCACGAACTTTCTGCAGGAGTGCTTCACCGATACTNCCGGCGCAAAAT 900
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 ACAACCAAACCGTGCAGCCGACCGATCGGCGTATGACAAGCGAACGATGCGGTCATCTGT 960
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 ACGCATTGGCCATTGCCAACAAGACCCACCTGAGCTGGGTTGGAACGTTCCCGATCAACT 1020
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 TTCTGCTGTACATTGGCTGCTACTACCCGAACTTGAAGCGAGTCCTGCTGAAAATTGTTG 1080
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 GCATGGAGCGTTTGCAGCGTGTTCGCGACAGTCGGTAAATTGGCGCTAATGAATTGAAAT 1140
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 AAAGCAGAAAAAGCCTACTGGGTTGCAGCAAAACAGCGCACACACACATACATCGGGCAT 1200
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 CGGGACATGGAGCGGCCACCCAATGTTTTACATTCCAAAGTGCCTAATACACGCGTAACT 1260
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 CTCACGTGTCCTAAGTTCATACAGCATCAACTTCGCCGCATCCAATCCACACACACGTTT 1320
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 CCAGAACGAAGCAGCATTTTACTGGTCAATTATTTAAAGTGTTTTTTTTTTCTATCTTTC 1380
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 TTTAGTACAATTTACACTATCATTCTCGTTTACCACGATATTAGCGGATGTGTTGTCTTT 1440
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 TTTCTACTTAAATTATTTAAGCACTATTATTAACTTTTTCTTGTAATCGTGCATCGCATT 1500
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 TAGGTTGTAGCATTATAATTTTTACATGTTTTTTGTTTTGTTTGTTGTAAAGTACCGCTT 1560
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 ACACAATGCTTTTAGATGAAATTATTTAATACTATGCTCTTATGCTCTTGTTTCTCGACA 1620
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 GAGTTTCACCACACATACGTCCTCTTTTTCACTCTCGTAGCCATTATTTTCAACTATTTT 1680
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 GTGAGTGTTGTGATTTTCTTTCAAGTTACAATAAATGTCCACACGCCATCAGTTATACTT 1740
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 TCCATATCGCTTAGATACTAGCATTTTTATTAAATCAAGTTTTTCTTTCCATTTTCATGT 1800
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 TCATTTTCTTCCTCTCTCTCTCTCTCTCTCTCGCATCTTGGTGTGGTACGCAGGAGAAAG 1860
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 AGGATTGCCATGTCCCCCACCTTTCACACAAACCGTGACGTCTCGCGCCCCGGGTCTGGT 1920
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 CTTTCTTTTCACAGTTGGAACTTTTTCCATCGTCACTCAATAATTCCTAACGCGCAAGTG 1980
consensus_7218#1 ------------------------------------------------------------
consensus_7218#0 AGAAATTTAAT 1991
consensus_7218#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||