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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 935 fasta sequence
[AATCTGGTGCAGAAACGAAAAAAGGGAACCCCCGTGCAAGGTGAACCAATAAAACAAACCGGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGAT-GATTGTGGCCGGC-TTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCGTTCTCACTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTCGCTGTACTCGATCCACACCAAGCGCACGCTGCAGCACGTCAACCAGGAGGTTTGGTTGCTAAGCTACTACAACAACGTCTACTCGGCCGTGCTGTTCATTCCGCTCATGCTGATCAACGGGGAGGTGCAGAAGGTGGCAAACTATGAACATTTGTTCGAGGGTTGGTTCTGGGGCGTGATGACGATCGGAGGCGTTTGCGGGTTTGCCATCGGCTTTGTGACGACG]
[+] EMBL BX601960 [AATCTGGTGCAGAAACGAAAAAAGGGAACCCCCGTGCAAGGTGAACCAATAAAACAAACCGGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGC ]
[+] EMBL BM617957 [ ccgAACGAAAAAAGGGAACCCCCGTGCAAGGTGAACCAATAAAACAAACCGGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGAT GATTGTGGCCGGC TTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCGTTCTCACTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTCGCTGTACTCGATCCACACCAAGCGCACGCTG ]
[+] EMBL BM579568 [ ccgCCCGTGCAAGGTAAACCAATAAAACAAAGCGGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAACCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCGTCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTCAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCTATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCATTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGAT GATTGTGGCCGGCTTTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCATTCTCACTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTC ]
[+] EMBL BM593992 [ ccgCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGTGGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAAGGAGAATTTATGCACCAAATACATCCGGATAGCGGTCGTTGTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGATGGATTGTGGCCGGCTTTTTGGATCGGTGTCG ]
[+] EMBL AGA282321 [ GTGGCGGCCTATTGGGTCATCTCTATACTTACCGTATTTGAAAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATANNNACGAACAATCTCTGCC ]
[+] EMBL BX616864 [ TGGGTCATCTCTATACTTACCGTATTTGTGAACAAGGCCCTGCTGAGCGGGCTGAAGCTCGATGCACCGCTGTTTGTGACGTGGTTCCAGGTGCTTACCTCGTCGACGATATGTTTCACCATGAGCATGCTGAGCAAGCGGTATCCACGGGCCGTCTCCTTTCCGGAGGGCAATCCGTTCGATAGGGAAACCTTCCGCAAGGTGCTTCCGCTCTCGATACTGTTCACCGCCATGATAGCGACGAACAATCTCTGCCTGAAGTACGTCAGCGTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTGCTGACGTACGCGCTGCTAGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTGAT GATTGTGGCCGGC TTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCGTTCTCACTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTCGCTGTACTCGATCCACACCAAGCGCACGCTGCAGCACGTCAACCAGGAGGTTTGGTTGCTAAGCTACTACAACAACGTCTACTCGGCCGTGCTGTTCATTCCGCTCATGCTGATCAACGGGGAGGTGCAGAAGGTGGCAAACTATGAACATTTGTTCGAGGGTTGGTTCTGGGGCGTGATGACGATCGGAGGCGTTTGCGGGTTTGCCATCGGCTTTGTGACGACG]
consensusID : consensus_7222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 854 fasta sequence
[AATTTTCACTCTAGCCAGAATTCCCCAGGTTTNCGGCGTAACATGTATCAGCCATTGGAAAACGGAGAATTTATAGCACCAAATACATCCGGATAGCTGGTCGTTGTGGCTGGCCTATATGGGTCGTCTCTATACTTACCTGTATTTGTGAACAANGCCCTGCTGAGCTGGGCTCAAGCTCGATGCACCTGGCTGTTTGTGACGTGGGTTCCAGGTTGCTTACCTCGTCGACCGATATGTTTCACCATGAGCCATGCTTGAGCAAGCNGGTATCCACGGGCCTGTTCTTCCTTTTCCCGGGAGTGNGCAAATCCCGGTTCGAATAAGGNGGGANAAACCCTTTCCCTGCGAAGGGTGGCTTTCCTGCTTCATCGCGATTACTTGNTCAACCCGGGTTATTGGCACTAAGCTGACCGCACACCAAAATTCCTTACTTGGGAGCCTNGAAAAGGTTAACGGTTCCAAGCCGGTTTGGGCCATTTTCCTTAACTTAACCGCTATCCGCGGACCGGTATACCGGCTTGAGAACCCGAAACCCCGGTTGGNTACCCACAATTGGTTTAGGCCTTTGGCCTCTGGACCGGTTTAAACGGCCGCCCTTGGCTTAAANGAGGAGCGCCCAGGAAACATCGAAAGCCCNAAGTGACCCAAAATACAAANAGNGCCATGGTTTGCACCCCTTTGGTTTGGGCCTTTGGGTATGNGCTTCGNCNAACCTAGAGAACTTATNGGGTNGAGAGCCCCCGTGGCGCCATCTTNTCGACAGGGGGGAAATATCANNGAGGCTGGGTATCCNGAGAAGATTCCATNAGCGGGGCAACAAAGNGGCCACTATTGGAAACCCCCCAGGTATA]
[+] EMBL AL693875 [AATTTTCACTCTAGCCAGAATTCCCCAGGTTTNCGGCGTAACATGTATCAGCCATTGGAAAACGGAGAATTTATAGCACCAAATACATCCGGATAGCTGGTCGTTGTGGCTGGCCTATATGGGTCGTCTCTATACTTACCTGTATTTGTGAACAANGCCCTGCTGAGCTGGGCTCAAGCTCGATGCACCTGGCTGTTTGTGACGTGGGTTCCAGGTTGCTTACCTCGTCGACCGATATGTTTCACCATGAGCCATGCTTGAGCAAGCNGGTATCCACGGGCCTGTTCTTCCTTTTCCCGGGAGTGNGCAAATCCCGGTTCGAATAAGGNGGGANAAACCCTTTCCCTGCGAAGGGTGGCTTTCCTGCTTCATCGCGATTACTTGNTCAACCCGGGTTATTGGCACTAAGCTGACCGCACACCAAAATTCCTTACTTGGGAGCCTNGAAAAGGTTAACGGTTCCAAGCCGGTTTGGGCCATTTTCCTTAACTTAACCGCTATCCGCGGACCGGTATACCGGCTTGAGAACCCGAAACCCCGGTTGGNTACCCACAATTGGTTTAGGCCTTTGGCCTCTGGACCGGTTTAAACGGCCGCCCTTGGCTTAAANGAGGAGCGCCCAGGAAACATCGAAAGCCCNAAGTGACCCAAAATACAAANAGNGCCATGGTTTGCACCCCTTTGGTTTGGGCCTTTGGGTATGNGCTTCGNCNAACCTAGAGAACTTATNGGGTNGAGAGCCCCCGTGGCGCCATCTTNTCGACAGGGGGGAAATATCANNGAGGCTGGGTATCCNGAGAAGATTCCATNAGCGGGGCAACAAAGNGGCCACTATTGGAAACCCCCCAGGTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7222#0 AATCTGGTGCAGAAACGAAAAAAGGGAACCCCCGTGCAAGGTGAACCAATAAAACAAACC 60
consensus_7222#1 ------------------------------------------------------------
consensus_7222#0 GGAATTCTATCGATAAGACTGAGAGAGCTCGCAAGGCCGAGATGATAGTTGCCTTCAAGT 120
consensus_7222#1 -------------------------------------------------AATTTTCACTC 11
****
consensus_7222#0 GGGCCTAGTAAATCAAACACCTTCCCGGCGTAGCCATGTATCAGCCATTGGAAAA-GGAG 179
consensus_7222#1 TAGCCAG---AATTCCCCAGGTTTNCGGCGTAAC-ATGTATCAGCCATTGGAAAACGGAG 67
*** *** ** ** ******* * ******************** ****
consensus_7222#0 AATTTAT-GCACCAAATACATCCGGATAGC-GGTCGTTGTGGC-GGCCTAT-TGGGTCAT 235
consensus_7222#1 AATTTATAGCACCAAATACATCCGGATAGCTGGTCGTTGTGGCTGGCCTATATGGGTCGT 127
******* ********************** ************ ******* ****** *
consensus_7222#0 CTCTATACTTACC-GTATTTGTGAACAAGGCCCTGCTGAGC-GGGCTGAAGCTCGATGCA 293
consensus_7222#1 CTCTATACTTACCTGTATTTGTGAACAANGCCCTGCTGAGCTGGGCTCAAGCTCGATGCA 187
************* ************** ************ ***** ************
consensus_7222#0 CC--GCTGTTTGTGACGTGG-TTCCAGGT-GCTTACCTCGTCGAC-GATATGTTTCACCA 348
consensus_7222#1 CCTGGCTGTTTGTGACGTGGGTTCCAGGTTGCTTACCTCGTCGACCGATATGTTTCACCA 247
** **************** ******** *************** **************
consensus_7222#0 TGAGC-ATGCT-GAGCAAGCGG-TATCCACGGGCCG----TCTCCTTTCCGGAGGGC--- 398
consensus_7222#1 TGAGCCATGCTTGAGCAAGCNGGTATCCACGGGCCTGTTCTTCCTTTTCCCGGGAGTGNG 307
***** ***** ******** * ************ * * ***** * * *
consensus_7222#0 --AATCC--GTTCGAT-----AGGGAAA--------CCTTCCGCAAGGTG---CTTCCGC 438
consensus_7222#1 CAAATCCCGGTTCGAATAAGGNGGGANAAACCCTTTCCCTGCGAAGGGTGGCTTTCCTGC 367
***** ****** **** * ** * ** * **** * * **
consensus_7222#0 TCT----CGATA--CTGTTCA--CCGCCATGATAGCGACGAACAATCTCTGC-CTGAAGT 489
consensus_7222#1 TTCATCGCGATTACTTGNTCAACCCGGGTTATTGGCACTAAGCTGACCGCACACCAAAAT 427
* **** ** *** *** * * ** * * * * * ** *
consensus_7222#0 ACGTCAGC-GTGGCTTTCTACTACGTCGGCCGTTCGCTGACGACCGTGTTCAATGTGCTG 548
consensus_7222#1 TCCTTACTTGGGAGCCTNGAAAAGGTTAACGGTTCCAAGCCGGTTTGGGCCATTTTCCT- 486
* * * * * * * * ** * **** * ** * ** * * **
consensus_7222#0 CTGACGTACGCGCTGCT---AGGCCAGAAGACCAGCCCGAAAGCGTGCCTGTGCTGTGTG 605
consensus_7222#1 -TAACTTAACCGCTATCCGCGGACCGGTATACCGGCTTGAGAACCCGAAACCCCGGTTGG 545
* ** ** **** * ** * * *** ** ** * * * * ** *
consensus_7222#0 ATGATTGTGGCCGGCTTTTGGATCGGTGTCGATCAGGAAAGCTTGACCGAATCGTTCTCA 665
consensus_7222#1 NTACCCACAATTGG--TTTAGGCCTTTGGCCTCTGGACCGGTTTAAACGGCCGCCCTTGG 603
* ** *** * * ** * * * ** * ** *
consensus_7222#0 CTGATTGGCACCGTGTTCGGTGTGCTTGGTTCGCTCAGCCTGTCGCTGTACTCGATCCAC 725
consensus_7222#1 CTTAAANGAGGAGCGCCCAGGAAACATCGAAAGCCCNAAGTGACCCAAAATACAAANAGN 663
** * * * * * * * * * ** * ** * * * * *
consensus_7222#0 ACCAAGCGCACGCTGCAGCACGTCAACCAGGAGGTTTGGTTGCTAAGCTACTACAACAAC 785
consensus_7222#1 GCCATGGT----TTGCACCCCTTTGGTTTGGGCCTTTGGGTA-TGNGCTTCGNCNAACCT 718
*** * **** * * * ** ***** * * *** * * *
consensus_7222#0 GTCTACTCGGCCGTGCTGTTCATTCCGCTCATGCTGATCAACGGGGAGGTGCAGAAGGTG 845
consensus_7222#1 AGAGAACTTATNGGGTNGAGAGCCCCCGTGGCGCCATCTTNTCGACAGGGGGGAAATATC 778
* * * * ** * ** * *** * ** *
consensus_7222#0 GCAAACTATGAACATTTGTTCGAGGGTTGGTTCTGGGGCGTGATGACGATCGGAGGCGTT 905
consensus_7222#1 ANNGAGGCTGGGTATCCNGAGAAGATTCCATN----AGCGGGGCAACAA--AGNGGCCAC 832
* ** ** ** * * *** * ** * * ***
consensus_7222#0 TGCGGGTTTGCCATCGGCTTTGTGACGACG 935
consensus_7222#1 TATTGGAAACCCCCCAGGTATA-------- 854
* ** ** * * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||