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Anopheles gambiae
cluster # 7227 cluster # 7227       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7227#0 length = 941 sequences # 6  
consensus_7227#1 length = 931 sequences # 1  

consensusID : consensus_7227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 941
fasta sequence
                              [ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCGAA-CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC-GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTG-CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCACTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCGGAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG]

[+] EMBL CNS09FDZ             [ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCG A CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGG CACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGT CAGATGTACATGAACAAGTACCGCAC GGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTGCCCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGG CGTACGT CGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGAGCGACAACGGCGCG                                                                                                                                                                                                              ]
[+] EMBL CNS09BFV             [          GCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCGAA CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX624165             [                                                                                      TCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCCGGCGACGAGGCCACCGATGCCGCCCCAGCCAAACCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGCAACCCGCGCAACATGCTGAACGAGGCGAAGCTGTGCGGTCCGCGCGGGATAATCGCACTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAACTGGAAGCAATGGCGCAGGCCGCCGCAAACAGTG CCGACGAAGAGGAGCCAGACGTTGGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGAGGGGCCGTACGTCCGTTGCCAACACGTCTGGTATTGGGAATCTCTCGATGGACAACACGTTCGATGCTGTGCGGCAGACCGACAACGGTGCTGTGCACGCGAATGCTCTCAAGGACACCCATCAGCAACAAACGGTCAAATCGCCACCGGTGGCTGATGAA                                                                                                                                         ]
[+] EMBL CNS08DVD             [                                                                                                                                                                                                                                                        TCCGAAACCCGCGCAACATGCTGAACGAGGCGAA CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTG CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGG                                                                                                              ]
[-] EMBL CNS08DVE             [                                                                                                                                                                                                                                                                                                                                                                                                  ACTACGAGCACTGGGCGCATCGGGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGAACAGGCGGCCGCCAACAGTG CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAA                                                                                                                                                                                          ]
[-] EMBL CNS09FE0             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCACTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCGGAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG]


>consensus_7227#0 ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCG ATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGA AGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGG CTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAA AAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCGAACTGTGCGGTCCGCGCGGG ATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCG TCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATCGGCTGTATCCGAAG TTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAG ATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAG GCGGCCGCCAACAGTGCCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTC GATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTT GCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAG ACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTC AAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCA CTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCG GAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG



consensusID : consensus_7227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 931
fasta sequence
                              [TCATGCAGATTCCCTGAGTTAAAGTATACTTATCGATTCAACCAACATTGATTATCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATAACTCCCGGACGGNGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCGCCCAGCAAGCCGTCGGTGGGTGAAGAACAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNGGGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGGCNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCGCGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAAGTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGGGGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGTTGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGGGCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANGCAAAACGCACGAATTTTTAGGCCCCCTGGGATATACCGAGGNGAGGGNCCAGGTAAAACGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTCATCCCTTCTCCAGAGATGTGGCCCACACACAACCAGTTCNCACGACATTCAACAGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGCACACNCGAAAGTTAGTATNTCAAACAT]

[+] EMBL AL696468             [TCATGCAGATTCCCTGAGTTAAAGTATACTTATCGATTCAACCAACATTGATTATCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATAACTCCCGGACGGNGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCGCCCAGCAAGCCGTCGGTGGGTGAAGAACAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNGGGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGGCNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCGCGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAAGTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGGGGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGTTGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGGGCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANGCAAAACGCACGAATTTTTAGGCCCCCTGGGATATACCGAGGNGAGGGNCCAGGTAAAACGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTCATCCCTTCTCCAGAGATGTGGCCCACACACAACCAGTTCNCACGACATTCAACAGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGCACACNCGAAAGTTAGTATNTCAAACAT]


>consensus_7227#1 TCATGCAGATTCCCTGAGTTAAAGTATACTTATCGATTCAACCAACATTGATTATCGCTC GACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCC GACGATAACTCCCGGACGGNGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCGCCCA GCAAGCCGTCGGTGGGTGAAGAACAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCT GAACTGANGCGACATGCTGTGNGGGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTT CAAGCACTTCCAAATTCCACNGGCNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGA TGCGCAACTAACGAACACTGGCGCGGCCATCTGGTGGTAATACGAAGTATCACTTATGAC GATTGTATGGCCAAGATCGAAAAGTCTGGCCACAAACAATGCAGGGTCCAGGATGTACAT TGAACCCAGGTACCGGCGAACGGGGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGC NACACGGCGGGCGACNAATCAGTTGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGT CAATGCTTTNNAAATTNCCGGGGGCCGGGCATACCAAAATCACCGGACATTGGGACGNCA GGGTCAAATTGCCTTTGGCAANGCAAAACGCACGAATTTTTAGGCCCCCTGGGATATACC GAGGNGAGGGNCCAGGTAAAACGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGC GACTTTTTTGGGGAAACATTCATCCCTTCTCCAGAGATGTGGCCCACACACAACCAGTTC NCACGACATTCAACAGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTT ATGCACACNCGAAAGTTAGTATNTCAAACAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7227#0      ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGA---AAAGTATTAACTTA 57
consensus_7227#1      --------------------------TCATGCAGATTCCCTGAGTTAAAGTAT--ACTTA 32
                                                   ***  * **   **   *******  *****

consensus_7227#0      TCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCT 117
consensus_7227#1      TCGATTCAA-CCAAC-ATTGATTATC-GCTCGACCATCTGTTTAGTGATAATGTGGCGCT 89
                      ********* ***** ** *** *** *********************************

consensus_7227#0      GGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGA 177
consensus_7227#1      GGAAGGTGAAAACGACGGGGAAATACTGTCCGACGAT-AACTCCCGGACGGNGATGCGGA 148
                      ************************************* ************* ********

consensus_7227#0      CGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAA 237
consensus_7227#1      CGGCTCGGGCGACGAGGCCACGGATGCG--CCCAGCAAG--CCGTCGGTG-GGTGAAGAA 203
                      ***************************   ****** *   ******  * ** *  ***

consensus_7227#0      GAAAAAAACGGTCC-GAAACCCG--CGCAACAT-GCTGAAC-GAGGCGA---ACTGTGCG 289
consensus_7227#1      CAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNG 263
                       **** *  ***** *******    ******* ******* ** ****    ***** *

consensus_7227#0      G--TCCGCGC-GGGATAATTGCGCTGAAGGACCACTTCAAGCACTTC-AAATTCCACGG- 344
consensus_7227#1      GGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGG 323
                      *   * ****  *********************************** ********* * 

consensus_7227#0      -CAAGGGCCACGAAGCGTCCGA-TCTGAACCGGCTGATGCGCAACTA-CGAGCACTGG-G 400
consensus_7227#1      CNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCG 383
                        * * ************* ** ************************ *** ****** *

consensus_7227#0      CG--CATCGGCTGT--ATCCGAAGTTTCACTT-TGACGATTGTATGGCCAAGATCGAAAA 455
consensus_7227#1      CGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAA 443
                      **  **** * **   ** ****** ****** ***************************

consensus_7227#0      GCTCGGCCACAAAAAGCA---GGTCCAG-ATGTACATGAA---CAAGTACCGC---ACGG 505
consensus_7227#1      GTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGG 503
                      *   ********* *      ******* ********  *   ** ******    ****

consensus_7227#0      G-TATGCTGCA--GGCGG--AAATGGAA--GCAATGGCACA-GGCGGCCGCCAA--CAGT 555
consensus_7227#1      GGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGT 563
                      * *********  *****  ****** *  ***  *  *** ***** ** * *  ****

consensus_7227#0      --GCCGACGAAGAGGAGCCGGACGTTA---GTCAGCTGAATCGGCCGCTCGATCCGCTGG 610
consensus_7227#1      TGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGG 623
                         * ***  * ** **   * **  *    * ** * ***           * *   **

consensus_7227#0      AC--AGTATGCTGGAGGAACAGATTGCCCGGTCGC-GGGGCCGTACGTCCGTTGCCAAC- 666
consensus_7227#1      GCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANG 683
                       *   * ** *   *   ** *       ** **   *** *  *   ** *** ***  

consensus_7227#0      ----ACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGAC 722
consensus_7227#1      CAAAACGCACGAATTTTTAGGCCCCCTG--GGATATACCGAGGNGAGGGNCCAGGTAAAA 741
                          ***  **   **      * *  *  *** *   **      * *    ** * * 

consensus_7227#0      CGACAACGGCGCG-GTGCACGCGAATGCTCTCAAAG-ACACCCATCAGCAACAAACGGTC 780
consensus_7227#1      CGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTC 801
                      ***  ** *     *   *  *  * *   ***  *  *  *  *       ****  **

consensus_7227#0      AAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCA 840
consensus_7227#1      ATCCCTTCTCCAGAG----ATGTGGCCCACACA----------CAACCAGTTCNCACGAC 847
                      *   *  * ** * *    ***    **   *           *** * *     * *  

consensus_7227#0      CTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCG 900
consensus_7227#1      ATTCAAC--AGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGC- 904
                       *  ***  **  *  * ** *    ****  *  * *     **  *** ***   ** 

consensus_7227#0      GAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG 941
consensus_7227#1      --ACACNCGAAAGTTAGTATNTCAAACAT------------ 931
                        * **  * **   *     *      *            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)