These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 941 fasta sequence [ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCGAA-CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC-GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTG-CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCACTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCGGAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG] [+] EMBL CNS09FDZ [ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCG A CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGG CACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGT CAGATGTACATGAACAAGTACCGCAC GGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTGCCCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGG CGTACGT CGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGAGCGACAACGGCGCG ] [+] EMBL CNS09BFV [ GCGGGATTGTTTTGGTGTTTGCGCACTCTTCGAAAAGTATTAACTTATCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGAAACCCGCGCAACATGCTGAACGAGGCGAA CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGG ] [+] EMBL BX624165 [ TCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGACGGCTCCGGCGACGAGGCCACCGATGCCGCCCCAGCCAAACCCGTCGCGGTGGAGGTGAAGAAAAAAACGGTCCGCAACCCGCGCAACATGCTGAACGAGGCGAAGCTGTGCGGTCCGCGCGGGATAATCGCACTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAACTGGAAGCAATGGCGCAGGCCGCCGCAAACAGTG CCGACGAAGAGGAGCCAGACGTTGGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGAGGGGCCGTACGTCCGTTGCCAACACGTCTGGTATTGGGAATCTCTCGATGGACAACACGTTCGATGCTGTGCGGCAGACCGACAACGGTGCTGTGCACGCGAATGCTCTCAAGGACACCCATCAGCAACAAACGGTCAAATCGCCACCGGTGGCTGATGAA ] [+] EMBL CNS08DVD [ TCCGAAACCCGCGCAACATGCTGAACGAGGCGAA CTGTGCGGTCCGCGCGGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCAAATTCCACGGCAAGGGCCACGAAGCGTCCGATCTGAACCGGCTGATGCGCAACTACGAGCACTGGGCGCATC GGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGCACAGGCGGCCGCCAACAGTG CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGG ] [-] EMBL CNS08DVE [ ACTACGAGCACTGGGCGCATCGGGCTGTATCCGAAGTTTCACTTTGACGATTGTATGGCCAAGATCGAAAAGCTCGGCCACAAAAAGCAGGTCCAGATGTACATGAACAAGTACCGCACGGGTATGCTGCAGGCGGAAATGGAAGCAATGGAACAGGCGGCCGCCAACAGTG CCGACGAAGAGGAGCCGGACGTTAGTCAGCTGAATCGGCCGCTCGATCCGCTGGACAGTATGCTGGAGGAACAGATTGCCCGGTCGCGGGGCCGTACGTCCGTTGCCAACACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAA ] [-] EMBL CNS09FE0 [ TCGATGCGGTACGGCAGACCGACAACGGCGCGGTGCACGCGAATGCTCTCAAAGACACCCATCAGCAACAAACGGTCAAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCACTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCGGAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG] consensusID : consensus_7227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 931 fasta sequence [TCATGCAGATTCCCTGAGTTAAAGTATACTTATCGATTCAACCAACATTGATTATCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATAACTCCCGGACGGNGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCGCCCAGCAAGCCGTCGGTGGGTGAAGAACAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNGGGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGGCNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCGCGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAAGTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGGGGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGTTGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGGGCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANGCAAAACGCACGAATTTTTAGGCCCCCTGGGATATACCGAGGNGAGGGNCCAGGTAAAACGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTCATCCCTTCTCCAGAGATGTGGCCCACACACAACCAGTTCNCACGACATTCAACAGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGCACACNCGAAAGTTAGTATNTCAAACAT] [+] EMBL AL696468 [TCATGCAGATTCCCTGAGTTAAAGTATACTTATCGATTCAACCAACATTGATTATCGCTCGACCATCTGTTTAGTGATAATGTGGCGCTGGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATAACTCCCGGACGGNGATGCGGACGGCTCGGGCGACGAGGCCACGGATGCGCCCAGCAAGCCGTCGGTGGGTGAAGAACAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNGGGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGGCNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCGCGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAAGTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGGGGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGTTGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGGGCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANGCAAAACGCACGAATTTTTAGGCCCCCTGGGATATACCGAGGNGAGGGNCCAGGTAAAACGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTCATCCCTTCTCCAGAGATGTGGCCCACACACAACCAGTTCNCACGACATTCAACAGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGCACACNCGAAAGTTAGTATNTCAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7227#0 ACCGTTCCTTGCGGGATTGTTTTGGTGTTTGCGCACTCTTCGA---AAAGTATTAACTTA 57 consensus_7227#1 --------------------------TCATGCAGATTCCCTGAGTTAAAGTAT--ACTTA 32 *** * ** ** ******* ***** consensus_7227#0 TCGATTCAAACCAACCATGGATCATCCGCTCGACCATCTGTTTAGTGATAATGTGGCGCT 117 consensus_7227#1 TCGATTCAA-CCAAC-ATTGATTATC-GCTCGACCATCTGTTTAGTGATAATGTGGCGCT 89 ********* ***** ** *** *** ********************************* consensus_7227#0 GGAAGGTGAAAACGACGGGGAAATACTGTCCGACGATGAACTCCCGGACGGCGATGCGGA 177 consensus_7227#1 GGAAGGTGAAAACGACGGGGAAATACTGTCCGACGAT-AACTCCCGGACGGNGATGCGGA 148 ************************************* ************* ******** consensus_7227#0 CGGCTCGGGCGACGAGGCCACGGATGCCGCCCCAGCCAAGCCCGTCGCGGTGGAGGTGAA 237 consensus_7227#1 CGGCTCGGGCGACGAGGCCACGGATGCG--CCCAGCAAG--CCGTCGGTG-GGTGAAGAA 203 *************************** ****** * ****** * ** * *** consensus_7227#0 GAAAAAAACGGTCC-GAAACCCG--CGCAACAT-GCTGAAC-GAGGCGA---ACTGTGCG 289 consensus_7227#1 CAAAACACTGGTCCTGAAACCCTGCTGCAACATTGCTGAACTGANGCGACATGCTGTGNG 263 **** * ***** ******* ******* ******* ** **** ***** * consensus_7227#0 G--TCCGCGC-GGGATAATTGCGCTGAAGGACCACTTCAAGCACTTC-AAATTCCACGG- 344 consensus_7227#1 GGTCCTGCGCTNGGATAATTGCGCTGAAGGACCACTTCAAGCACTTCCAAATTCCACNGG 323 * * **** *********************************** ********* * consensus_7227#0 -CAAGGGCCACGAAGCGTCCGA-TCTGAACCGGCTGATGCGCAACTA-CGAGCACTGG-G 400 consensus_7227#1 CNANGNGCCACGAAGCGTCNGAATCTGAACCGGCTGATGCGCAACTAACGAACACTGGCG 383 * * ************* ** ************************ *** ****** * consensus_7227#0 CG--CATCGGCTGT--ATCCGAAGTTTCACTT-TGACGATTGTATGGCCAAGATCGAAAA 455 consensus_7227#1 CGGCCATCTGGTGGTAATACGAAGTATCACTTATGACGATTGTATGGCCAAGATCGAAAA 443 ** **** * ** ** ****** ****** *************************** consensus_7227#0 GCTCGGCCACAAAAAGCA---GGTCCAG-ATGTACATGAA---CAAGTACCGC---ACGG 505 consensus_7227#1 GTCTGGCCACAAACAATGCAGGGTCCAGGATGTACATTGAACCCAGGTACCGGCGAACGG 503 * ********* * ******* ******** * ** ****** **** consensus_7227#0 G-TATGCTGCA--GGCGG--AAATGGAA--GCAATGGCACA-GGCGGCCGCCAA--CAGT 555 consensus_7227#1 GGTATGCTGCACGGGCGGGAAAATGGGAAGGCATGGCNACACGGCGGGCGACNAATCAGT 563 * ********* ***** ****** * *** * *** ***** ** * * **** consensus_7227#0 --GCCGACGAAGAGGAGCCGGACGTTA---GTCAGCTGAATCGGCCGCTCGATCCGCTGG 610 consensus_7227#1 TGACNGACNGAAAGCAGGGAGCCGCGACGCNTAAGGTCAATGCTTTNNAAATTNCCGGGG 623 * *** * ** ** * ** * * ** * *** * * ** consensus_7227#0 AC--AGTATGCTGGAGGAACAGATTGCCCGGTCGC-GGGGCCGTACGTCCGTTGCCAAC- 666 consensus_7227#1 GCCGGGCATACCAAAATCACCGGACATTGGGACGNCAGGGTCAAATTGCCTTTGGCAANG 683 * * ** * * ** * ** ** *** * * ** *** *** consensus_7227#0 ----ACGTCCGGCATTGGGAATCTCTCGATGGACAACACGTTCGATGCGGTACGGCAGAC 722 consensus_7227#1 CAAAACGCACGAATTTTTAGGCCCCCTG--GGATATACCGAGGNGAGGGNCCAGGTAAAA 741 *** ** ** * * * *** * ** * * ** * * consensus_7227#0 CGACAACGGCGCG-GTGCACGCGAATGCTCTCAAAG-ACACCCATCAGCAACAAACGGTC 780 consensus_7227#1 CGATNACNGNTTTTGCCNAAACANAAGNGTTCACCGTGCGACTTTTTTGGGGAAACATTC 801 *** ** * * * * * * *** * * * * **** ** consensus_7227#0 AAATCACCACCGGTGGCTGATGAAATCCGAGCGAAAATTGAAGCAAACCGGCTGAAAGCA 840 consensus_7227#1 ATCCCTTCTCCAGAG----ATGTGGCCCACACA----------CAACCAGTTCNCACGAC 847 * * * ** * * *** ** * *** * * * * consensus_7227#0 CTAGAACTAAGGAAGGCCCGTCTGAAAGCCCTCTCCCAGAAGAGCAGCCCGGGTGGAGCG 900 consensus_7227#1 ATTCAAC--AGTGATACACGGCCACGAGCCGGCANCAAACCATGCGACCCCGGTTATGC- 904 * *** ** * * ** * **** * * * ** *** *** ** consensus_7227#0 GAAAACGTGGAAAACAACTCGTGTGGATTGCCGCCATCGTG 941 consensus_7227#1 --ACACNCGAAAGTTAGTATNTCAAACAT------------ 931 * ** * ** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||