These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1311 fasta sequence [CCGGAAGCTGATCCAGAAGCGTGCGTCCGGCGAGCTGATGACGACGGCCAGCTGGATACGGCAGCAGGTCGTTTCCCATCCCGAGTACAAGCACGATTCCGTCATCAGCGAGGGCAATTGTTACGATCTGCTGCGAAAGGCGAAGGACATACAGGACGGTGTGCTGGCCTGCCCGGAGCTGCTCGGCAACAACATCAACTCGAAAACGACGGACAACATTCCGGCCGCGATTGAGAAGCATCTCACCAAGCGATGTTAGTAGCTAGTAGCCGTCGTTGTCGTTGAGTTTTAGCGAGTGCGATAATGCCGTGAAACCGTTCGGCTAATCTACTTACACGCTCTGCCTCCTCCCCCTCCCCATTGCCCTAACTTTACTTAAGTCACCCCAAAAGGGATTAGCAATGGTGGTGGT-GGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGC-GGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTACAAAGTAAGGTTAGACAGTTTGTTTGTTAAGTTTACGTTGCAATGATATTTTTTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTGCCATCCCCAGTTCGTCTTCAGTTCTGGATTTCTTTTTCAATTCCAAAGACACGTACACACAAACATCCACGATCCTCTTCCTCACATACTTTTGGTGTGTTGGCTTTGTTTTGCAGAAGACAACGAAGAGCACGAAGGAAACGTTAGCGTTTACAAGCACCTAAGCAAACTAGCAAACACATTCTCAGAACACTGTTACACCTAGCGACCTGAACAGAACGGAACACAGAACAGAACGCGAAGCGCGAAGAGGGCGAGGGGAGGGCAGTGGAAGTTTTTACTATACAAAGACGACC] [+] EMBL BM591297 [CCGGAAGCTGATCCAGAAGCGTGCGTCCGGCGAGCTGATGACGACGGCCAGCTGGATACGGCAGCAGGTCGTTTCCCATCCCGAGTACAAGCACGATTCCGTCATCAGCGAGGGCAATTGTTACGATCTGCTGCGAAAGGCGAAGGACATACAGGACGGTGTGCTGGCCTGCCCGGAGCTGCTCGGCAACAACATCAACTCGAAAACGACGGACAACATTCCGGCCGCGATTGAGAAGCATCTCACCAAGCGATGTTAGTAGCTAGTAGCCGTCGTTGTCGTTGAGTTTTAGCGAGTGCGATAATGCCGTGAAACCGTTCGGCTAATCTACTTACACGCTCTGCCTCCTCCCCCTCCCCATTGCCCTAACTTTACTTAAGTCACCCCAAAAGGGATCAGCAATGGTGGTGGTGGGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGAGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATACAATTCTTTTTCCTCACAATGCTGTACAGCAAATGCATTTTCCc ] [+] EMBL BX615609 [ AACATTCCGGCCGCGATTGAGAAGCATCTCACCAAGCGAGGTTAGTAGCAAGTAGCCGTCGTTGTCGTTGAGTTTTAGCGAGTGCGATAATGCCGTGAAACCGTTCGGCTAATCTACTTACACGCTCTGCCTCCTCCCCCTCCCCATTGCCCTAACTTTACTTAAGTCACCCCAAAAGGGATTAGCAATGGTGGTGGT GGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGC GGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATA ] [+] EMBL BX616855 [ CCCCCTCCCCATTGCCCTAACTTTACTTTAGTCACCCCAAAAGGGATTAGCAATGGTGGTGGT GGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGC GGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTTTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTACAAAGTAAGGTTAGACAGTTTGTTTGTTAAGTTTACGTTGCAATGATATTTTTTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTGCCATCCCCAGTTCGTCTTCAGTTCTGGATTTCTTTTTCAATTCCAAAGACACGTACACACAAACATCCACGATCCTCTTCCTCACATAC ] [+] EMBL BX611183 [ ATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGC GGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTTTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTACAAAGTAAGGTTAGACAGTTTGTTTGTTAAGTTTACGTTGCAATGATATTTTTTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTGCCATCCCC ] [+] EMBL BX614964 [ TAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAA ] [+] EMBL BX615729 [ ATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACTCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTACAAAGTAAGGTTAGACAGTTTGTTTGTTAAGTTTACGTTGCAATGATATTTTTTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTGCCATCCCCAGTTCGTCTTCAGTTCTGGATTTCTTTTTCAATTCCAAAGACACGTACACACAAACATCCACGATCCTCTTCCTCACATACTTTTGGTGTGTTGGCTTTGTTTTGCAGAAGACAACGAAGAGCACGAAGGAAACGTTAGCGTTTACAAGCACCTAAGCAAACTAGCAAACACATTCTCAGAACACTGTTACACCTAGCGACCTGAACAGAACGGAACACAGAACAGAACGCGAAGCGCGAAGAGGGCGAGGGGAGGGCAGTGGAAGTTTTTACTATACAAAGACGACC] consensusID : consensus_7228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CAGAATCGGCACGAGGGGGATTAGCAATGGTGGTGGTGGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGGGCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTCACAAAGTAAGGTTAGACAGGTTTGTTTGTTAACGGTTTACGTTGCAATGATATTCCTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCAACATCTTAACGGCCACCCATCCTTTTGGCCATCCCCAATTCGTCTTCAGTTCCTTG] [+] EMBL BX467522 [CAGAATCGGCACGAGGGGGATTAGCAATGGTGGTGGTGGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGGGCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTCACAAAGTAAGGTTAGACAGGTTTGTTTGTTAACGGTTTACGTTGCAATGATATTCCTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCAACATCTTAACGGCCACCCATCCTTTTGGCCATCCCCAATTCGTCTTCAGTTCCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7228#0 CCGGAAGCTGATCCAGAAGCGTGCGTCCGGCGAGCTGATGACGACGGCCAGCTGGATACG 60 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 GCAGCAGGTCGTTTCCCATCCCGAGTACAAGCACGATTCCGTCATCAGCGAGGGCAATTG 120 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 TTACGATCTGCTGCGAAAGGCGAAGGACATACAGGACGGTGTGCTGGCCTGCCCGGAGCT 180 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 GCTCGGCAACAACATCAACTCGAAAACGACGGACAACATTCCGGCCGCGATTGAGAAGCA 240 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 TCTCACCAAGCGATGTTAGTAGCTAGTAGCCGTCGTTGTCGTTGAGTTTTAGCGAGTGCG 300 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 ATAATGCCGTGAAACCGTTCGGCTAATCTACTTACACGCTCTGCCTCCTCCCCCTCCCCA 360 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 TTGCCCTAACTTTACTTAAGTCACCCCAAAAGGGATTAGCAATGGTGGTGGTGGTGATGG 420 consensus_7228#1 ---------------CAGAATCGGCACGAGGGGGATTAGCAATGGTGGTGGTGGTGATGG 45 * ** * * * ***************************** consensus_7228#0 TGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAG 480 consensus_7228#1 TGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAG 105 ************************************************************ consensus_7228#0 GGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTA 540 consensus_7228#1 GGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTA 165 ************************************************************ consensus_7228#0 TTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGATGTCGAGGACGAATAACA 600 consensus_7228#1 TTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGATGTCGAGGACGAATAACA 225 ************************************************************ consensus_7228#0 CGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCAT 660 consensus_7228#1 CGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCAT 285 ************************************************************ consensus_7228#0 TTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTT 720 consensus_7228#1 TTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTT 345 ************************************************************ consensus_7228#0 GCAAGCAACCCCGC-CCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTT 779 consensus_7228#1 GCAAGCAACCCCGGGCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTT 405 ************* ********************************************* consensus_7228#0 TTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGT 839 consensus_7228#1 TTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGT 465 ************************************************************ consensus_7228#0 GTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTT-AC 898 consensus_7228#1 GTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTCAC 525 ********************************************************* ** consensus_7228#0 AAAGTAAGGTTAGACAG-TTTGTTTGTTAA--GTTTACGTTGCAATGATATTTTTTATGT 955 consensus_7228#1 AAAGTAAGGTTAGACAGGTTTGTTTGTTAACGGTTTACGTTGCAATGATATTCCT-ATGT 584 ***************** ************ ******************** * **** consensus_7228#0 ATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTG 1015 consensus_7228#1 ATCGTGTAAGTCTGTGGACCATGCGCACGCAACATCTTAACGGCC-ACCCATCCTTTTGG 643 ******************************* ************* **** * *** * consensus_7228#0 CCATCCCCAGTTCGTCTTCAGTTCTGGATTTCTTTTTCAATTCCAAAGACACGTACACAC 1075 consensus_7228#1 CCATCCCCAATTCGTCTTCAGTTCCTTG-------------------------------- 671 ********* ************** consensus_7228#0 AAACATCCACGATCCTCTTCCTCACATACTTTTGGTGTGTTGGCTTTGTTTTGCAGAAGA 1135 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 CAACGAAGAGCACGAAGGAAACGTTAGCGTTTACAAGCACCTAAGCAAACTAGCAAACAC 1195 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 ATTCTCAGAACACTGTTACACCTAGCGACCTGAACAGAACGGAACACAGAACAGAACGCG 1255 consensus_7228#1 ------------------------------------------------------------ consensus_7228#0 AAGCGCGAAGAGGGCGAGGGGAGGGCAGTGGAAGTTTTTACTATACAAAGACGACC 1311 consensus_7228#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||