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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1311 fasta sequence
[CCGGAAGCTGATCCAGAAGCGTGCGTCCGGCGAGCTGATGACGACGGCCAGCTGGATACGGCAGCAGGTCGTTTCCCATCCCGAGTACAAGCACGATTCCGTCATCAGCGAGGGCAATTGTTACGATCTGCTGCGAAAGGCGAAGGACATACAGGACGGTGTGCTGGCCTGCCCGGAGCTGCTCGGCAACAACATCAACTCGAAAACGACGGACAACATTCCGGCCGCGATTGAGAAGCATCTCACCAAGCGATGTTAGTAGCTAGTAGCCGTCGTTGTCGTTGAGTTTTAGCGAGTGCGATAATGCCGTGAAACCGTTCGGCTAATCTACTTACACGCTCTGCCTCCTCCCCCTCCCCATTGCCCTAACTTTACTTAAGTCACCCCAAAAGGGATTAGCAATGGTGGTGGT-GGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGC-GGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTACAAAGTAAGGTTAGACAGTTTGTTTGTTAAGTTTACGTTGCAATGATATTTTTTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTGCCATCCCCAGTTCGTCTTCAGTTCTGGATTTCTTTTTCAATTCCAAAGACACGTACACACAAACATCCACGATCCTCTTCCTCACATACTTTTGGTGTGTTGGCTTTGTTTTGCAGAAGACAACGAAGAGCACGAAGGAAACGTTAGCGTTTACAAGCACCTAAGCAAACTAGCAAACACATTCTCAGAACACTGTTACACCTAGCGACCTGAACAGAACGGAACACAGAACAGAACGCGAAGCGCGAAGAGGGCGAGGGGAGGGCAGTGGAAGTTTTTACTATACAAAGACGACC]
[+] EMBL BM591297 [CCGGAAGCTGATCCAGAAGCGTGCGTCCGGCGAGCTGATGACGACGGCCAGCTGGATACGGCAGCAGGTCGTTTCCCATCCCGAGTACAAGCACGATTCCGTCATCAGCGAGGGCAATTGTTACGATCTGCTGCGAAAGGCGAAGGACATACAGGACGGTGTGCTGGCCTGCCCGGAGCTGCTCGGCAACAACATCAACTCGAAAACGACGGACAACATTCCGGCCGCGATTGAGAAGCATCTCACCAAGCGATGTTAGTAGCTAGTAGCCGTCGTTGTCGTTGAGTTTTAGCGAGTGCGATAATGCCGTGAAACCGTTCGGCTAATCTACTTACACGCTCTGCCTCCTCCCCCTCCCCATTGCCCTAACTTTACTTAAGTCACCCCAAAAGGGATCAGCAATGGTGGTGGTGGGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGAGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATACAATTCTTTTTCCTCACAATGCTGTACAGCAAATGCATTTTCCc ]
[+] EMBL BX615609 [ AACATTCCGGCCGCGATTGAGAAGCATCTCACCAAGCGAGGTTAGTAGCAAGTAGCCGTCGTTGTCGTTGAGTTTTAGCGAGTGCGATAATGCCGTGAAACCGTTCGGCTAATCTACTTACACGCTCTGCCTCCTCCCCCTCCCCATTGCCCTAACTTTACTTAAGTCACCCCAAAAGGGATTAGCAATGGTGGTGGT GGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGC GGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATA ]
[+] EMBL BX616855 [ CCCCCTCCCCATTGCCCTAACTTTACTTTAGTCACCCCAAAAGGGATTAGCAATGGTGGTGGT GGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGC GGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTTTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTACAAAGTAAGGTTAGACAGTTTGTTTGTTAAGTTTACGTTGCAATGATATTTTTTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTGCCATCCCCAGTTCGTCTTCAGTTCTGGATTTCTTTTTCAATTCCAAAGACACGTACACACAAACATCCACGATCCTCTTCCTCACATAC ]
[+] EMBL BX611183 [ ATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGC GGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTTTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTACAAAGTAAGGTTAGACAGTTTGTTTGTTAAGTTTACGTTGCAATGATATTTTTTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTGCCATCCCC ]
[+] EMBL BX614964 [ TAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAA ]
[+] EMBL BX615729 [ ATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACTCCTAGTTTTGCAAGCAACCCCGCCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTACAAAGTAAGGTTAGACAGTTTGTTTGTTAAGTTTACGTTGCAATGATATTTTTTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTGCCATCCCCAGTTCGTCTTCAGTTCTGGATTTCTTTTTCAATTCCAAAGACACGTACACACAAACATCCACGATCCTCTTCCTCACATACTTTTGGTGTGTTGGCTTTGTTTTGCAGAAGACAACGAAGAGCACGAAGGAAACGTTAGCGTTTACAAGCACCTAAGCAAACTAGCAAACACATTCTCAGAACACTGTTACACCTAGCGACCTGAACAGAACGGAACACAGAACAGAACGCGAAGCGCGAAGAGGGCGAGGGGAGGGCAGTGGAAGTTTTTACTATACAAAGACGACC]
consensusID : consensus_7228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CAGAATCGGCACGAGGGGGATTAGCAATGGTGGTGGTGGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGGGCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTCACAAAGTAAGGTTAGACAGGTTTGTTTGTTAACGGTTTACGTTGCAATGATATTCCTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCAACATCTTAACGGCCACCCATCCTTTTGGCCATCCCCAATTCGTCTTCAGTTCCTTG]
[+] EMBL BX467522 [CAGAATCGGCACGAGGGGGATTAGCAATGGTGGTGGTGGTGATGGTGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAGGGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTATTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGATGTCGAGGACGAATAACACGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCATTTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTTGCAAGCAACCCCGGGCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTTTTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGTGTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTCACAAAGTAAGGTTAGACAGGTTTGTTTGTTAACGGTTTACGTTGCAATGATATTCCTATGTATCGTGTAAGTCTGTGGACCATGCGCACGCAACATCTTAACGGCCACCCATCCTTTTGGCCATCCCCAATTCGTCTTCAGTTCCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7228#0 CCGGAAGCTGATCCAGAAGCGTGCGTCCGGCGAGCTGATGACGACGGCCAGCTGGATACG 60
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 GCAGCAGGTCGTTTCCCATCCCGAGTACAAGCACGATTCCGTCATCAGCGAGGGCAATTG 120
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 TTACGATCTGCTGCGAAAGGCGAAGGACATACAGGACGGTGTGCTGGCCTGCCCGGAGCT 180
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 GCTCGGCAACAACATCAACTCGAAAACGACGGACAACATTCCGGCCGCGATTGAGAAGCA 240
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 TCTCACCAAGCGATGTTAGTAGCTAGTAGCCGTCGTTGTCGTTGAGTTTTAGCGAGTGCG 300
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 ATAATGCCGTGAAACCGTTCGGCTAATCTACTTACACGCTCTGCCTCCTCCCCCTCCCCA 360
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 TTGCCCTAACTTTACTTAAGTCACCCCAAAAGGGATTAGCAATGGTGGTGGTGGTGATGG 420
consensus_7228#1 ---------------CAGAATCGGCACGAGGGGGATTAGCAATGGTGGTGGTGGTGATGG 45
* ** * * * *****************************
consensus_7228#0 TGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAG 480
consensus_7228#1 TGGTCTCACACATGTTGGCGGGTGATTTTCGTGTGCCGGGAGCGAACCAAAACAAAACAG 105
************************************************************
consensus_7228#0 GGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTA 540
consensus_7228#1 GGGAAGGGAGAAAATCGTTTCCGTTTTCTTCTCTGGCGCGCCAAACACCGAATGCGGGTA 165
************************************************************
consensus_7228#0 TTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGATGTCGAGGACGAATAACA 600
consensus_7228#1 TTTCAATGTTCAATGTTAGCAGGCTCGCGCTCAAGCAGCGGATGTCGAGGACGAATAACA 225
************************************************************
consensus_7228#0 CGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCAT 660
consensus_7228#1 CGGCTGCACGGGAGAAGGAATGCAATTCTTTTTCCTCACAACGCCGTACAGCAAATGCAT 285
************************************************************
consensus_7228#0 TTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTT 720
consensus_7228#1 TTCCCATTTGGAGGGGAGACAGATAGACGACACCCCGGAAGGCAACAAACCCCTAGTTTT 345
************************************************************
consensus_7228#0 GCAAGCAACCCCGC-CCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTT 779
consensus_7228#1 GCAAGCAACCCCGGGCCAAAAAGGGCCAGTTTGCGAGGGGGAAAAGTTGTGCTGTTTCTT 405
************* *********************************************
consensus_7228#0 TTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGT 839
consensus_7228#1 TTTTATTATTATTGTTCTATTATTATCTTTATGATTTGCTGATTGTTCAAATAGGTGTGT 465
************************************************************
consensus_7228#0 GTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTT-AC 898
consensus_7228#1 GTGCTTCACATGGTGTTGTTAAGAGAAGAAAGTATGGCACAAGGTAGCATACGTTTTCAC 525
********************************************************* **
consensus_7228#0 AAAGTAAGGTTAGACAG-TTTGTTTGTTAA--GTTTACGTTGCAATGATATTTTTTATGT 955
consensus_7228#1 AAAGTAAGGTTAGACAGGTTTGTTTGTTAACGGTTTACGTTGCAATGATATTCCT-ATGT 584
***************** ************ ******************** * ****
consensus_7228#0 ATCGTGTAAGTCTGTGGACCATGCGCACGCACCATCTTAACGGCCCACCCCATCCTTTTG 1015
consensus_7228#1 ATCGTGTAAGTCTGTGGACCATGCGCACGCAACATCTTAACGGCC-ACCCATCCTTTTGG 643
******************************* ************* **** * *** *
consensus_7228#0 CCATCCCCAGTTCGTCTTCAGTTCTGGATTTCTTTTTCAATTCCAAAGACACGTACACAC 1075
consensus_7228#1 CCATCCCCAATTCGTCTTCAGTTCCTTG-------------------------------- 671
********* **************
consensus_7228#0 AAACATCCACGATCCTCTTCCTCACATACTTTTGGTGTGTTGGCTTTGTTTTGCAGAAGA 1135
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 CAACGAAGAGCACGAAGGAAACGTTAGCGTTTACAAGCACCTAAGCAAACTAGCAAACAC 1195
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 ATTCTCAGAACACTGTTACACCTAGCGACCTGAACAGAACGGAACACAGAACAGAACGCG 1255
consensus_7228#1 ------------------------------------------------------------
consensus_7228#0 AAGCGCGAAGAGGGCGAGGGGAGGGCAGTGGAAGTTTTTACTATACAAAGACGACC 1311
consensus_7228#1 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||