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Anopheles gambiae
cluster # 7229 cluster # 7229       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7229#0 length = 1168 sequences # 6  
consensus_7229#1 length = 490 sequences # 1  

consensusID : consensus_7229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1168
fasta sequence
                              [CCGCCCACGCGTCCG-AGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTATCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA----TCTCTCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTTCGTCGTCACAGCCGGGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACAGTCTCTCGCTACAGACCAGCCTCACGATGGTGGCCGGCGCAGGCGGCAGTAACTTCCACTCCGAGTTCCGGAACGATCCGGTCGTGAAGGAGATGCGCCAAATACGGGAAGAGAATGCACGGCGCCAGAAGCACGACTACTCGCACGTATTTCGCAACAAATCCCGGTTCGATTTCATTAGAATCTCAGCAGTGATCATGGGCATGGAGTTTGTCTACTCGGCCGAGACGGCCTTCGTCTCACCGATCCTGCTCAGCATCGGCATCGAGCATCAGCTCATGACCATGGTGTGGGGCATCTCGCCCCTGATCGGCTTCTTCCTATCGCCCGTTATCGGTTCCGTCAGCGATCGGTGCCGGTCGAGGTTTGGGCGTCGCCNGNCGGTACTGTTTGCGCTCGGCGTCGGTTTTGATAACNGGCTGCATATTGGTACCGTACGGTCGGAACATTGGCGCGTGGGTTGGAGAT]

[+] EMBL BM582877             [CCGCCCACGCGTCCG AGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTTCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACATCTCTCTCTCTCTCTCTCTCTCTCTGGGAAGAAGGAAACAGATCCGAGCGCAGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM592768             [            CCG AGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTATCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA        TCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAACGCAGGTTCGTCGTCACAGCCGGGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM614242             [            CCGCAGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGCGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTATCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA      TCTCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM603167             [            CCGCAGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM646251             [                   ccgCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGCGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTATCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA    TCTCTCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX624090             [                                                                                                                                                                                                                                                                                                                                                                                                                                TGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA    TCTCTCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTTCGTCGTCACAGCCGGGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACAGTCTCTCGCTACAGACCAGCCTCACGATGGTGGCCGGCGCAGGCGGCAGTAACTTCCACTCCGAGTTCCGGAACGATCCGGTCGTGAAGGAGATGCGCCAAATACGGGAAGAGAATGCACGGCGCCAGAAGCACGACTACTCGCACGTATTTCGCAACAAATCCCGGTTCGATTTCATTAGAATCTCAGCAGTGATCATGGGCATGGAGTTTGTCTACTCGGCCGAGACGGCCTTCGTCTCACCGATCCTGCTCAGCATCGGCATCGAGCATCAGCTCATGACCATGGTGTGGGGCATCTCGCCCCTGATCGGCTTCTTCCTATCGCCCGTTATCGGTTCCGTCAGCGATCGGTGCCGGTCGAGGTTTGGGCGTCGCCNGNCGGTACTGTTTGCGCTCGGCGTCGGTTTTGATAACNGGCTGCATATTGGTACCGTACGGTCGGAACATTGGCGCGTGGGTTGGAGAT]


>consensus_7229#0 CCGCCCACGCGTCCGAGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGG GCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCG AATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGA AGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTAT CAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCAC GTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGC TGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAA AACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAG TTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGAC AAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACATCTCTC TCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTTCGTCGTCACAGCCG GGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACAGTCTCTCGCTACAGACCAGC CTCACGATGGTGGCCGGCGCAGGCGGCAGTAACTTCCACTCCGAGTTCCGGAACGATCCG GTCGTGAAGGAGATGCGCCAAATACGGGAAGAGAATGCACGGCGCCAGAAGCACGACTAC TCGCACGTATTTCGCAACAAATCCCGGTTCGATTTCATTAGAATCTCAGCAGTGATCATG GGCATGGAGTTTGTCTACTCGGCCGAGACGGCCTTCGTCTCACCGATCCTGCTCAGCATC GGCATCGAGCATCAGCTCATGACCATGGTGTGGGGCATCTCGCCCCTGATCGGCTTCTTC CTATCGCCCGTTATCGGTTCCGTCAGCGATCGGTGCCGGTCGAGGTTTGGGCGTCGCCNG NCGGTACTGTTTGCGCTCGGCGTCGGTTTTGATAACNGGCTGCATATTGGTACCGTACGG TCGGAACATTGGCGCGTGGGTTGGAGAT



consensusID : consensus_7229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence
                              [CCGCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTTCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCCTTTTCTTGCTGCATT]

[+] EMBL BM642152             [CCGCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTTCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCCTTTTCTTGCTGCATT]


>consensus_7229#1 CCGCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAG TAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGA GATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAG TGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTTCAAAGTGAATTTCCCTCC GCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAA AAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGT GAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGC ATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCCTTTTC TTGCTGCATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7229#0      CCGCCCACGCGTCCGAGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGG 60
consensus_7229#1      ------------------CCGCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGG 42
                                           ***************************************

consensus_7229#0      GCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCG 120
consensus_7229#1      GCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCG 102
                      ************************************************************

consensus_7229#0      AATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGA 180
consensus_7229#1      AATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGA 162
                      ************************************************************

consensus_7229#0      AGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTAT 240
consensus_7229#1      AGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTT 222
                      ********************************************************** *

consensus_7229#0      CAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCAC 300
consensus_7229#1      CAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCAC 282
                      ************************************************************

consensus_7229#0      GTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGC 360
consensus_7229#1      GTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGC 342
                      ************************************************************

consensus_7229#0      TGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAA 420
consensus_7229#1      TGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAA 402
                      ************************************************************

consensus_7229#0      AACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAG 480
consensus_7229#1      AACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAG 462
                      ************************************************************

consensus_7229#0      TTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGAC 540
consensus_7229#1      TTCAGAGGGCGCCTTTTCTTGCTGCATT-------------------------------- 490
                      ************          ** *                                  

consensus_7229#0      AAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACATCTCTC 600
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      TCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTTCGTCGTCACAGCCG 660
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      GGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACAGTCTCTCGCTACAGACCAGC 720
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      CTCACGATGGTGGCCGGCGCAGGCGGCAGTAACTTCCACTCCGAGTTCCGGAACGATCCG 780
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      GTCGTGAAGGAGATGCGCCAAATACGGGAAGAGAATGCACGGCGCCAGAAGCACGACTAC 840
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      TCGCACGTATTTCGCAACAAATCCCGGTTCGATTTCATTAGAATCTCAGCAGTGATCATG 900
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      GGCATGGAGTTTGTCTACTCGGCCGAGACGGCCTTCGTCTCACCGATCCTGCTCAGCATC 960
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      GGCATCGAGCATCAGCTCATGACCATGGTGTGGGGCATCTCGCCCCTGATCGGCTTCTTC 1020
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      CTATCGCCCGTTATCGGTTCCGTCAGCGATCGGTGCCGGTCGAGGTTTGGGCGTCGCCNG 1080
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      NCGGTACTGTTTGCGCTCGGCGTCGGTTTTGATAACNGGCTGCATATTGGTACCGTACGG 1140
consensus_7229#1      ------------------------------------------------------------
                                                                                  

consensus_7229#0      TCGGAACATTGGCGCGTGGGTTGGAGAT 1168
consensus_7229#1      ----------------------------
                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)