These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1168 fasta sequence [CCGCCCACGCGTCCG-AGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTATCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA----TCTCTCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTTCGTCGTCACAGCCGGGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACAGTCTCTCGCTACAGACCAGCCTCACGATGGTGGCCGGCGCAGGCGGCAGTAACTTCCACTCCGAGTTCCGGAACGATCCGGTCGTGAAGGAGATGCGCCAAATACGGGAAGAGAATGCACGGCGCCAGAAGCACGACTACTCGCACGTATTTCGCAACAAATCCCGGTTCGATTTCATTAGAATCTCAGCAGTGATCATGGGCATGGAGTTTGTCTACTCGGCCGAGACGGCCTTCGTCTCACCGATCCTGCTCAGCATCGGCATCGAGCATCAGCTCATGACCATGGTGTGGGGCATCTCGCCCCTGATCGGCTTCTTCCTATCGCCCGTTATCGGTTCCGTCAGCGATCGGTGCCGGTCGAGGTTTGGGCGTCGCCNGNCGGTACTGTTTGCGCTCGGCGTCGGTTTTGATAACNGGCTGCATATTGGTACCGTACGGTCGGAACATTGGCGCGTGGGTTGGAGAT] [+] EMBL BM582877 [CCGCCCACGCGTCCG AGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTTCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACATCTCTCTCTCTCTCTCTCTCTCTCTGGGAAGAAGGAAACAGATCCGAGCGCAGGTT ] [+] EMBL BM592768 [ CCG AGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTATCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA TCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAACGCAGGTTCGTCGTCACAGCCGGGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACA ] [+] EMBL BM614242 [ CCGCAGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGCGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTATCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA TCTCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTT ] [+] EMBL BM603167 [ CCGCAGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTT ] [+] EMBL BM646251 [ ccgCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGCGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTATCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA TCTCTCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGC ] [+] EMBL BX624090 [ TGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGACAAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACA TCTCTCTCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTTCGTCGTCACAGCCGGGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACAGTCTCTCGCTACAGACCAGCCTCACGATGGTGGCCGGCGCAGGCGGCAGTAACTTCCACTCCGAGTTCCGGAACGATCCGGTCGTGAAGGAGATGCGCCAAATACGGGAAGAGAATGCACGGCGCCAGAAGCACGACTACTCGCACGTATTTCGCAACAAATCCCGGTTCGATTTCATTAGAATCTCAGCAGTGATCATGGGCATGGAGTTTGTCTACTCGGCCGAGACGGCCTTCGTCTCACCGATCCTGCTCAGCATCGGCATCGAGCATCAGCTCATGACCATGGTGTGGGGCATCTCGCCCCTGATCGGCTTCTTCCTATCGCCCGTTATCGGTTCCGTCAGCGATCGGTGCCGGTCGAGGTTTGGGCGTCGCCNGNCGGTACTGTTTGCGCTCGGCGTCGGTTTTGATAACNGGCTGCATATTGGTACCGTACGGTCGGAACATTGGCGCGTGGGTTGGAGAT] consensusID : consensus_7229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CCGCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTTCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCCTTTTCTTGCTGCATT] [+] EMBL BM642152 [CCGCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGGGCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCGAATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGAAGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTTCAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCACGTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGCTGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAAAACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAGTTCAGAGGGCGCCTTTTCTTGCTGCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7229#0 CCGCCCACGCGTCCGAGATAACCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGG 60 consensus_7229#1 ------------------CCGCCGGCTGGTGCAGGCACGGGTGCAGCTTCTTCGCCTAGG 42 *************************************** consensus_7229#0 GCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCG 120 consensus_7229#1 GCGTAACAATTCGGCGAGTAAGATCGCGCGTGTACGATCCAGTTTCCAGCTAGTGTTTCG 102 ************************************************************ consensus_7229#0 AATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGA 180 consensus_7229#1 AATTGAGTTCTATTTTGAGATCCAATTTCTCGGTTTTTTTTCAAGAACTTGTGTCCTTGA 162 ************************************************************ consensus_7229#0 AGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTAT 240 consensus_7229#1 AGAAGCTTTTCCGTGTAGTGATCTCTCTTTCTCTCTCACACTTTCCGCCTAAGTGTGTTT 222 ********************************************************** * consensus_7229#0 CAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCAC 300 consensus_7229#1 CAAAGTGAATTTCCCTCCGCTTAAGTGGATGGGAATAGTGATTCCTTACTCAATCTCCAC 282 ************************************************************ consensus_7229#0 GTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGC 360 consensus_7229#1 GTGACGAGCAGGCTTGAAAAAGGCTCCTCCAGGCCACCATTTTGCCACTGCCCGGACTGC 342 ************************************************************ consensus_7229#0 TGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAA 420 consensus_7229#1 TGTTGCGCTGCTGTGTGTGAAAGTTATGTGCAAACCGACCACGGTCCTCGTTCCCTGCAA 402 ************************************************************ consensus_7229#0 AACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAG 480 consensus_7229#1 AACCAGACGTCTGGACGCATTGAGCCGTCACCAGTGCAGTGGAAGAACATTAGCGAGTAG 462 ************************************************************ consensus_7229#0 TTCAGAGGGCGCTGAAAAGCCGTGAACAGCTTTTTGAATTTTTGGGTGACCAAAAGTGAC 540 consensus_7229#1 TTCAGAGGGCGCCTTTTCTTGCTGCATT-------------------------------- 490 ************ ** * consensus_7229#0 AAATCAAAAAGCGACCCAAGTTCTTTAAGAAGTCGTTGAAGATAGTGTGTGACATCTCTC 600 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 TCTCTCTCTCTCTCTGTGAAGAAGGAAACAGATCCGAGCGCAGGTTCGTCGTCACAGCCG 660 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 GGCACGAGCAAGGCAGGCAGCTCCAAAAAGCACAATCACAGTCTCTCGCTACAGACCAGC 720 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 CTCACGATGGTGGCCGGCGCAGGCGGCAGTAACTTCCACTCCGAGTTCCGGAACGATCCG 780 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 GTCGTGAAGGAGATGCGCCAAATACGGGAAGAGAATGCACGGCGCCAGAAGCACGACTAC 840 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 TCGCACGTATTTCGCAACAAATCCCGGTTCGATTTCATTAGAATCTCAGCAGTGATCATG 900 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 GGCATGGAGTTTGTCTACTCGGCCGAGACGGCCTTCGTCTCACCGATCCTGCTCAGCATC 960 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 GGCATCGAGCATCAGCTCATGACCATGGTGTGGGGCATCTCGCCCCTGATCGGCTTCTTC 1020 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 CTATCGCCCGTTATCGGTTCCGTCAGCGATCGGTGCCGGTCGAGGTTTGGGCGTCGCCNG 1080 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 NCGGTACTGTTTGCGCTCGGCGTCGGTTTTGATAACNGGCTGCATATTGGTACCGTACGG 1140 consensus_7229#1 ------------------------------------------------------------ consensus_7229#0 TCGGAACATTGGCGCGTGGGTTGGAGAT 1168 consensus_7229#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||