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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1039 fasta sequence
[CCGCGGACGCGTGGGAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAGTCGAGAATAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGAAGTGACCTCTTTCGGAAGCGGGTATCCGGGCGACCCGACTACGAAAAAGTTTTTGGGCGAAATTGATCTGGTGTTTGGATTTCCACGATTGGTAAGGTTTAGCTGGTCCACTGCGGGGAATGCCCTGGAGAAGAAGGCATATGATATGGAATTCGAGGATGAGACAGACGCCAAGGATGCCGAGAAAGCGTCGTATGGCAGTAAGAAGCTGTCCAAGTATTTTGCAACATCGAAAAACGAAAACAGAAAGCGACACGAATACTTTCGGGAACGTTGTTTGGAGCATGTAGCGGATATTTAGAAAGAATAAAGTTGGTCGTATAACATAAAAAAAAAAA]
[+] EMBL BM654355 [CCGCGGACGCGTGGGAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAGTCGAGAATAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATC ]
[-] EMBL AGA281633 [ AATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGAAGTGACCTCTTTCGGAAGCGGGTATCCGGGCGACCCGACTACGAAAAAGTTTTTGGGCGAAATTGATCTGGTGTTTGGATTTCCACGATTGGTAAGGTTTAGCTGGTCCACTGCGGGGAATGCCCTGGAGAAGAAGGCATATGATATGGAATTCGAGGATGAGACAGACGCCAAGGATGCCGAGAAAGCGTCGTATGGCAGTAAGAAGCTGTCCAAGTATTTTGCAACATCGAAAAACGAAAACAGAAAGCGACACGAATACTTTCGGGAACGTTGTTTGGAGCATGTAGCGGATATTTAGAAAGAATAAAGTTGGTCGTATAACATAAAAAAAAAAA]
consensusID : consensus_7239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 648 fasta sequence
[CCGCCCACGCGTCCGAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGA]
[+] EMBL BM611876 [CCGCCCACGCGTCCGAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGA]
[+] EMBL AL933627 [ ATTGGGACCGTACA TTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATG ]
[+] EMBL BX619525 [ TAACGCTAAAAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGCCCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAGAACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGCAATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAAGTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGCCGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCACGCTCTG ]
[+] EMBL AGA283215 [ CGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGGTGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTGTCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGACGGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGa ]
consensusID : consensus_7239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence
[CCGCCTACTTGCAAGCCAAAAAAAATGGACAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAGTCGAGAATAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACA]
[+] EMBL BM594448 [CCGCCTACTTGCAAGCCAAAAAAAATGGACAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAGTCGAGAATAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAAAAACTTCGTATACGTTTCCGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7239#0 CCGCGGACGCGTGGGAAAAAAGTGAAGCAAGAGCCTGAAAGTCATTCGGATGTGAAGCAG 60
consensus_7239#1 ------------------------------------------------------CCGCCC 6
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 TCGAGAAT-AGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAA 119
consensus_7239#1 ACGCGTCCGAGAGAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAACGCTAA 66
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 AAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGG 179
consensus_7239#1 AAACTTCGTATACGTTTCCGACATCCCACAGCTGTGCAAGGATGAACCGTGTATGCTTGG 126
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 TGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTG 239
consensus_7239#1 TGTCGATGAAGCCGGCCGTGGACCAGTGCTCGGCCCTATGGTGTACGGAATCGCTTTCTG 186
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 TCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGAC 299
consensus_7239#1 TCCGCTATCGAAAAAAGATATTCTTAAACAGCTTGGATTTGCCGATTCAAAGCAACTGAC 246
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 GGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGC 359
consensus_7239#1 GGAGGAAAAACGTGATCAAATATTCGATGAAATGAACCGCAAGGATTTTGCGAAGACAGC 306
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 CCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAG 419
consensus_7239#1 CCTCGGATGGGCCGTCGAGGCCATATCGCCCAATGTGATCTCGATGTGCATGCTTAGAAG 366
consensus_7239#2 -------------------------------------CCGCCTACTTGCAAGCCAAAAAA 23
* * **** ** * **
consensus_7239#0 AACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGC 479
consensus_7239#1 AACGAAGCATTCGCTCAACGAAGTGTCAATGGACTCTGCTATCGGGTTGATCAACTCGGC 426
consensus_7239#2 AATGGACAAAAAAGTGAAGCAAGAGCC--TGAAAGTCATTCGGATGTGAAGCAG-TCGAG 80
** * * * * ** *** * * ** * * ** * ** ***
consensus_7239#0 AATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAA 539
consensus_7239#1 AATTGACGCGGGCGTTAACATTGCGGAGGTATACGTGGATACGGTAGGACCGCCGGAAAA 486
consensus_7239#2 AATAGA-GAACCTAGAAACATTGGGACCGTACATTTTGGAACAGGATAAC-GCTAAAAAC 138
*** ** * ******* * *** * * * ** * * ** ** ***
consensus_7239#0 GTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGC 599
consensus_7239#1 GTATCAAGCCAAGCTGAAAGCCATCTTTCCTAAGTTCAAAATCACCGTAGCCAAGAAAGC 546
consensus_7239#2 TTCGTATACGTTTCCGACA----------------------------------------- 157
* * * * ** *
consensus_7239#0 CGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCA 659
consensus_7239#1 CGACAGCACGTACCCAATCGTATCGGCGGCAAGTATTGCAGCGAAGGTGACGCGCGATCA 606
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 CGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGAAGTGACCTCTTTCGGAAG 719
consensus_7239#1 CGCTCTGAAGGTGTGGAAATTTCGTGAACGACCGAACGAAGA------------------ 648
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 CGGGTATCCGGGCGACCCGACTACGAAAAAGTTTTTGGGCGAAATTGATCTGGTGTTTGG 779
consensus_7239#1 ------------------------------------------------------------
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 ATTTCCACGATTGGTAAGGTTTAGCTGGTCCACTGCGGGGAATGCCCTGGAGAAGAAGGC 839
consensus_7239#1 ------------------------------------------------------------
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 ATATGATATGGAATTCGAGGATGAGACAGACGCCAAGGATGCCGAGAAAGCGTCGTATGG 899
consensus_7239#1 ------------------------------------------------------------
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 CAGTAAGAAGCTGTCCAAGTATTTTGCAACATCGAAAAACGAAAACAGAAAGCGACACGA 959
consensus_7239#1 ------------------------------------------------------------
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 ATACTTTCGGGAACGTTGTTTGGAGCATGTAGCGGATATTTAGAAAGAATAAAGTTGGTC 1019
consensus_7239#1 ------------------------------------------------------------
consensus_7239#2 ------------------------------------------------------------
consensus_7239#0 GTATAACATAAAAAAAAAAA 1039
consensus_7239#1 --------------------
consensus_7239#2 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||