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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1036 fasta sequence
[GGTGTCAGAGTAAGACGGTTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAATAGAGAGTCAAATAGTACGTGAAACTGCCTAGGGGTACAAACCCGTTGAACTCAATGATCCGGGCGGCGATATTCAGCGGTAAACTAGCATTTGCCGTGCACTTATCGATCCGCAGTAACGGACATCGCGATCCATTACAACAGCGGTTGGCCTCGTGCTAACGCTCCGGCATACACTGCCCCTAGCTCGTGGTGGACGGTCCCTCTGTAAGGGTAGGGTAGCTGCTCTACACTGACCGGGGATCTCCGCGCAGTCCTTCTGGAAGGCGAATGGGTCCGACCGAGCTCTGGTGTGCTGCTGGAAGGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCGAATCCTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGCAAGTGCCACCTGACGCTTGTCTACTCGAAGCAGGAGGAGAAGTAAAAGGTGAAAGTGGCGTGAGCGGAGGATGTACGGCGCGCTTGGCCGTTTCAGTCTTGAACCCCAACCACACCAACCCCCCTCCACACGTGCATGAGGCGTGCGCTCGCTTCTCAGGTTGCTTTTCCACTTCTTCTACCTGGGTTTAGTGTAATCGATGCGGCAGCGTGTTGTCCTCTACACGGTCCACACAAATTGGAAGGGAAAACAATAAAGATGATACGGCTATCGTGCCTGT]
[+] EMBL CNS09E69 [GGTGTCAGAGTAAGACGGTTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAATAGAGAGTCAAATAGTACGTGAAACTGCCTAGGGGTACAAACCCGTTGAACTCAATGATCCGGGCGGCGATATTCAGCGGTAAACTAGCATTTGCCGTGCACTTATCGATCCGCAGTAACGGACATCGCGATCCATTACAACAGCGGTTGGCCTCGTGCTAACGCTCCGGCATACACTGCCCCTAGCTCGTGGTGGACGGTCCCTCTGTAAGGGTAGGGTAGCTGCTCTACACTGACCGGGGATCTCCGCGCAGTCCTTCTGGAAGGCGAATGGGTCCGACCGAGCTCTGGTGTGCTGCTGGAAGGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCGAATCCTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGCAAGTGCCACCT ]
[-] EMBL CNS09E6A [ TAGTACGTGAAACTGCCTAGGGGTACAAACCCGTTGAACTCAATGATCCGGGCGGCGATATTCAGCGGTAAACTAGCATTTGCCGTGCACTTATCGATCCGCAGTAACGGACATCGCGATCCATTACAACAGCGGTTGGCCTCGTG TAACGCTCCGGCATACACTGCCCCTAGCTCGTGGTGGACGGTCCCTCTGTAAGGGTAGGGTAGCTGCTCTACACTGACCGGGGATCTCCGCGCAGTCCTTCTGGAAGGCGAATGGGTCCGACCGAGCTCTGGTGTGCTGCTGGAAGGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCGAATCCTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGCAAGTGCCACCTGACGCTTGTCTACTCGAAGCAGGAGGAGAAGTAAAAGGTGAAAGTGGCGTGAGCGGAGGATGTACGGCGCGCTTGGCCGTTTCAGTCTTGAACCCCAACCACACCAACCCCCCTCCACACGTGCATGAGGCGTGCGCTCGCTTCTCAGGTTGCTTTTCCACTTCTTCTACCTGGGTTTAGTGTAATCGATGCGGCAGCGTGTTGTCCTCTACACGGTCCACACAAATTGGAAGGGAAAACAATAAAGATGATACGGCTATCGTGCCTGT]
[-] EMBL CNS098M1 [ TGTTGTGCTGCTGGAAGGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCAAATCCTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGCAAGTGCCACCTGACGCTTGTCTACTCGAAGCAGGAGGAGAAGTAAAAGGTGAAAGTGGCGTGAGCGGAGGATGTACGGCGCGCTTGGCCGTTTCAGTCTTGAACCCCAACCACACCAACCCCCCTCCAAACGTGCATGAGGCGTGCGCTCGCTTCTCAGGTTGCTTTTCCACTTCTTCTACCTGGGTTTAGTGTAATCGATGCGGCAGCGTGTTGTCCTCTACACGTTCCACAAAAATTGGAAGGGAAAACAATAAAGATGA ]
consensusID : consensus_7246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[CACGAGCAAGCAGGTTAATCGACACTCAAAAACAATCGCGAGGCTGCTTCGCCGTGTGTGTAAACGCGTTTCTTGTAGGCAGGATAAGTGCAGTGTTATTGTTCAGCACAATTCGAGCAATTACAGCGTGTAGTTTGTAAACGTTGATCTCATTAACGCGAAGAGTTTTAATTAAAAGAAGTGAAAATGCCACGCCAAGATGGAGCAGAGGCAGGAGCGCCGAAGATAATTCAGGCTACATTGCGCTAGGTGGCGTGGCCGTCGTTATTCTGTACCTTGCCTTCGGCTATGGAGCTCAGATCCTCTGCAACGTGATTGGAGTGGCGTATCCCGCTTACATCTCGATGAAAGCCATCGAAACCCGCACGAAAGAGGATGACACTAAATGGTTAACGTACTGGGTAACGTTTGGCGTGCTGTCGGTGTTTGAGCACTTCTCCTTCTTCCTGGTTCAGATCATCCCGTTCTACTGGTTGCTGAAGTGCTTATTCCACATATGGTGTATGGTACCGATGGAAAACAATGGTTCCACGATCATGTACCACAA]
[+] EMBL CNS094X3 [CACGAGCAAGCAGGTTAATCGACACTCAAAAACAATCGCGAGGCTGCTTCGCCGTGTGTGTAAACGCGTTTCTTGTAGGCAGGATAAGTGCAGTGTTATTGTTCAGCACAATTCGAGCAATTACAGCGTGTAGTTTGTAAACGTTGATCTCATTAACGCGAAGAGTTTTAATTAAAAGAAGTGAAAATGCCACGCCAAGATGGAGCAGAGGCAGGAGCGCCGAAGATAATTCAGGCTACATTGCGCTAGGTGGCGTGGCCGTCGTTATTCTGTACCTTGCCTTCGGCTATGGAGCTCAGATCCTCTGCAACGTGATTGGAGTGGCGTATCCCGCTTACATCTCGATGAAAGCCATCGAAACCCGCACGAAAGAGGATGACACTAAATGGTTAACGTACTGGGTAACGTTTGGCGTGCTGTCGGTGTTTGAGCACTTCTCCTTCTTCCTGGTTCAGATCATCCCGTTCTACTGGTTGCTGAAGTGCTTATTCCACATATGGTGTATGGTACCGATGGAAAACAATGGTTCCACGATCATGTACCACAA]
consensusID : consensus_7246#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 512 fasta sequence
[CCGCGGACGCGTGGGTTTGAGTGCAGATCTACTACTACTACACACATACACAGTAGCGCTGTAGAAAGTGTGAATTTGTGCGGGAGCGGGTGTTTGCAGTGGTTGCTGATGATCGAACATGAAACGGACCTTTCGATGTTTTGTATCACAAAAAAAAATGCACCGCAAAACGTGGTGCGGCCAGTGCAGATGCTGCTCGCGCAGCTTAGTCAAACAGGATAATTAGTTGAAAACACGAACAAAAAGCACAGAATTCACCTGGTTGCTGTGTTTTTATCCTTTTTTTTATTTCATCCCAAATTTTTATTTATAATTGTTAGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGATTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATTAATAGCAAACATACCATGCTACGGACATATTGAACGTATCGTATAATGTTACAAATAAAGTTTAAATCCAAACAAAAAAGACAAAATGGC]
[+] EMBL BM619709 [CCGCGGACGCGTGGGTTTGAGTGCAGATCTACTACTACTACACACATACACAGTAGCGCTGTAGAAAGTGTGAATTTGTGCGGGAGCGGGTGTTTGCAGTGGTTGCTGATGATCGAACATGAAACGGACCTTTCGATGTTTTGTATCACAAAAAAAAATGCACCGCAAAACGTGGTGCGGCCAGTGCAGATGCTGCTCGCGCAGCTTAGTCAAACAGGATAATTAGTTGAAAACACGAACAAAAAGCACAGAATTCACCTGGTTGCTGTGTTTTTATCCTTTTTTTTATTTCATCCCAAATTTTTATTTATAATTGTTAGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGATTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATTAATAGCAAACATACCATGCTACGGACATATTGAACGTA ]
[+] EMBL BM646269 [ ccGCAGATCTACTACTACTACACACATACACAGTAGCGCTGTAGAAAGTGTGAATTTGTGCGGGAGCGGGTGTTTGCAGTGGTTGCTGATGATCGAACATGAAACGGACCTTTCGATGTTTTGTATCACAAAAAAAAATGCACCGCAAAACGTGGTGCGGCCAGTGCAGATGCTGCTCGCGCAGCTTAGTCAAACAGGATAATTAGTTGAAAACACGAACAAAAAGCACAGAATTCACCTGGTTGCTGTGTTTTTATCCTTTTTTTTATTTCATCCCAAATTTTTATTTATAATTGTTAGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGATTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATTAATAGCAAACATACCATGCTACGGACATATTGAACGTATCGTATAATGTTACAAATAAAGTTTAAATCCAAACAAAAAAGACAAAATGGC]
[+] EMBL BM653208 [ ccgGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGATTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATTAATAGCAAACATACCATGCTACGGACATATTGAACGTATCGTATAATGTTACAAATAAAGTTTAAATCCAAACAAAAAAGACAAAATGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7246#0 GGTGTCAGAGTAAGACGGTTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACC 60
consensus_7246#2 ------------------------------------------------------------
consensus_7246#1 ------------------------------------------------------------
consensus_7246#0 ATTACCCTTGAGGTCGAGCCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGAC 120
consensus_7246#2 ------------------------------------------------------------
consensus_7246#1 ------------------------------------------------------------
consensus_7246#0 AAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGAT 180
consensus_7246#2 -----------------------------------------CCGCGGAC-GCGTGGGTTT 18
consensus_7246#1 ------------------------------------------CACGAGC--AAGCAGGTT 16
* * * *
consensus_7246#0 GGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGTGTTGCTTGATAGTGCAGCAC 240
consensus_7246#2 GAGTGCA-GATCTACTACTACTACACACATACACAGTAGCGCTG-TAGAAAGTGTGAATT 76
consensus_7246#1 AATCG-ACACTCAAAAACAATCGCGAGGCTGCTTCGCCGTGTGTGTAAACGCGTTTCTTG 75
* * * ** * * * * * * *
consensus_7246#0 TAAGTGGGAG--GTAAACTCCTTCTAAA-GCTAAATACC-ACCA--TGAGTCCGATAGCG 294
consensus_7246#2 TGTGCGGGAGCGGGTGTTTGCAGTGGTT-GCTGATGATCGAACA--TGAAACGGACCTTT 133
consensus_7246#1 TAGGCAGGATAAGTGCAGTGTTATTGTTCAGCACAATTCGAGCAATTACAGCGTGTAGTT 135
* * *** * * * * ** * *
consensus_7246#0 AACAAGTACCG-TGAGGGAAAGTTGAAAAGCACTC-TGAATAGAGAGTCAAATAGTACGT 352
consensus_7246#2 CG-ATGTTTTG-TATCACAAAAA-AAAATGCACCG-CAAAACGTGGTGCGGCCAGTGCA- 188
consensus_7246#1 TGTAAACGTTGATCTCATTAACGCGAAGAGTTTTAATTAAAAGAAGTGAAAATGCCACGC 195
* * * ** ** * ** * *
consensus_7246#0 GAAACTGCCTAGGGGTACAAACCCGTTGAACTCAATGATCCGGGCGGCGA-TATTCAGCG 411
consensus_7246#2 GATGCTGCTCGCGCAGCTTAGTCAAACAGGATAATTAGTTGAAAACACGAACAAAAAGCA 248
consensus_7246#1 CAAGATGGA-GCAGAGGCAGGAGCGCCGAA---GATAATTCAGGCTACAT-TGCGCTAGG 250
* ** * * *
consensus_7246#0 GTAAACTAGCAT--TTGCCGTGCACTTATCGATCCGCAGT--AACGGACATCGCGATCCA 467
consensus_7246#2 CAGAATTCACCTGGTTGCTGTGTTTTTATCCTTTTTTT-T--ATTT--CATCCCAAATTT 303
consensus_7246#1 TGGCGTGGCCGTCGTTATTCTGTACCTTGCCTTCGGCTATGGAGCTCAGATCCTCTGCAA 310
* * ** ** * * * * * ***
consensus_7246#0 T-TACA-ACAGCGGTTGGCCTCGTGCTAACGCT-----CCGGCATACACT-GCCCCTAG- 518
consensus_7246#2 T-TATTTATAATTGTTAGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGA 362
consensus_7246#1 CGTGATTGGAGTGGCGTATCCCGCTTACATCTCGATGAAAGCCATCGAAA--CCCGCACG 368
* * * * *** * * *
consensus_7246#0 CTCGTGGTGGACGGTCCCTCTGTAAGG-GTAGGGTAGC-TGCTCTACACTGACCGGGGAT 576
consensus_7246#2 TTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATT 422
consensus_7246#1 AAAGAGGATGACACTAAATGGTTAACGTACTGGGTAAC--GTTTGGCG--TGCTGTCGGT 424
* * ** * * *** * * * * * * * *
consensus_7246#0 CTCCGCGCAGTCCTTCTGGAAGGCGAATGGGTCCGACCGAGCTCTGGTGTGCTGCTGGAA 636
consensus_7246#2 AATAGC--AAACATACCATGCTACGGACATATT-GAACGTATCGTATAATGTTACAAATA 479
consensus_7246#1 GTTTGAGCACTTCTCCTTCTTCCTGGTTCAGAT-CATCCCGTTCTACTG-GTTGCTG--- 479
* * * * * * * * * * *
consensus_7246#0 GGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCGAATC 696
consensus_7246#2 AAGTT-TAAATCCAAACAAAAAAGACAAAATGGC-------------------------- 512
consensus_7246#1 AAGTGCTTATTCCACATATGGTGTATGGTACCGATGGAAAACAATGGTTCCACGATCATG 539
** * * * * * *
consensus_7246#0 CTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGC 756
consensus_7246#2 ------------------------------------------------------------
consensus_7246#1 TACCACAA---------------------------------------------------- 547
consensus_7246#0 AAGTGCCACCTGACGCTTGTCTACTCGAAGCAGGAGGAGAAGTAAAAGGTGAAAGTGGCG 816
consensus_7246#2 ------------------------------------------------------------
consensus_7246#1 ------------------------------------------------------------
consensus_7246#0 TGAGCGGAGGATGTACGGCGCGCTTGGCCGTTTCAGTCTTGAACCCCAACCACACCAACC 876
consensus_7246#2 ------------------------------------------------------------
consensus_7246#1 ------------------------------------------------------------
consensus_7246#0 CCCCTCCACACGTGCATGAGGCGTGCGCTCGCTTCTCAGGTTGCTTTTCCACTTCTTCTA 936
consensus_7246#2 ------------------------------------------------------------
consensus_7246#1 ------------------------------------------------------------
consensus_7246#0 CCTGGGTTTAGTGTAATCGATGCGGCAGCGTGTTGTCCTCTACACGGTCCACACAAATTG 996
consensus_7246#2 ------------------------------------------------------------
consensus_7246#1 ------------------------------------------------------------
consensus_7246#0 GAAGGGAAAACAATAAAGATGATACGGCTATCGTGCCTGT 1036
consensus_7246#2 ----------------------------------------
consensus_7246#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||