These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1531 fasta sequence [GGAGCTGAACCGACTGAAAGCGATACACGAAAGCCGTTTGCGAGCCGGTGCTCAGAAGGTTCACAAACTCGAGCAACTGCTCATGATGCAAACGTTTCAGCTGCGGCAGGATAAGAAGCGTTTACAAGAGGATAACGCACGACTGCAAACAGGCATAGCGCAAGCAAAGGATCAAACTGAACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAA-AAGAGCTCAAGGACCAAAACGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCAGCGATCTGAAGGAGCGCTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAACTCAGCTCAAAGATGCACAGGCCGAACTATCGTCGAAAGACCAAGAAATTGTGCAGTTGAGAGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAA--AAAAGGAGC-TTGACTT-TGATCTGGAAATTTCACAACTCAATCG-CATTGTTATCTTCAAGGATCAGATCATCG-TGC-TGATGAACAACGA-AATTCAGA-AGTTACG-CAAGGAACTGTCTGACATTTCGATACTGCGAGGCTATGAAGGTGCA-CCGACCGGTCGATACGCGCG-TTACAAGAAAAAGCTCGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCGCAACGACAGCAACAATAACAATCAGCTTACGAATAGCAATAGCGGCAGCAACAAACCAACAGACTCTCCAACGGGTGGGGGAAACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGAT-AAGAAATTGTTTTCTGAGCTCGCAGATCTGTAACTACT-CCGACGA-GGACAAGTCG-AACA-TTATCGATGCGTACGGCA-GTGGAAAACC-GGTTGATATCACTGATATCACGC-TCGATTTGAGCAG-TCTG-CT-GCCAAACTCTCTGACTGCGACGACACATAACCCAGTGGATGATGTACCAGTCACTACTTCGGATAGCTATAATCATCACCACAGCTCATCCGACGATGATTACAAATCCATGACACCTACGCAGGAAGAGCATGTGCCGGCAGAGGCGCACGAAAAGGAATTGCACGTTTCTTCTGCCAAACCCATCGAAAGCTCGGGCCTAAAGGAAGGAAAGCATCAGCACAATAGTGTTGACGAGCTAGAACGGCTTAACCGGGAGCTAGCAGCATGCCGGGAATGCTTCGAACAGGAAAAAGCGAAATGGGCAGACGAAAAGGAAAAGGTGCTGATCTATCAGCGGCAGTTGCAGAAAAATTATGTCGAAATGTGCAAGCGCACACAGCTGCTCGAGGAGCAGCTCAAGACTATGCAGATAGAACAAGGTCATCGTGACTCTAGTCGAAACTAGAGCCCATTTAGACAATTGTGCTACGTCTATACCAAGACGAGCACGGCTATTAACGTANGTTTCCAAACGGACGTGAGCGTTT] [+] EMBL BX620776 [GGAGCTGAACCGACTGAAAGCGATACACGAAAGCCGTTTGCGAGCCGGTGCTCAGAAGGTTCACAAACTCGAGCAACTGCTCATGATGCAAACGTTTCAGCTGCGGCAGGATAAGAAGCGTTTACAAGAGGATAACGCACGACTGCAAACAGGCATAGCGCAAGCAAAGGATCAAACTGAACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAA AAGAGCTCAAGGACCAAAACGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCAGCGATCTGAAGGAGCGCTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAACTCAGCTCAAAGATGCACAGGCCGAACTATCGTCGAAAGACCAAGAAATTGTGCAGTTGAGAGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAA AAAAGGAGC TTGACTT TGATCTGGAAATTTCACAACTCAATCG CATTGTTATCTTCAAGGATCAGATCATCG TGC TGATGAACAACGA AATTCAGA AGTTACG CAAGGAACTGTCTGACATTTCGATACTGCGANGCTATGAANGTGCACCCGACCGGTCGATACGCGCGTTTACNAG AAAAGCTCGAGCTCGT ] [+] EMBL BX625607 [ CAAAGGATCAAACTGAACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAAGAAGAGCTCAAGGACCAAAACGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCNGCGATCTGAAGGAGCGCTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAACTCANCTCAAAGATGCACAGGNCGAACTATCGTCGAAAGACCAAGAAATTGTGCAGTTGANAGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAA AAAAGGAGC TTGACTT TGATCTGGAAATTTCACNACTCAATCG CNTTGTTATCTTCAAGGANCAGATCNTCG TGC TGATGAACAACGA NATTCAGA AGTTACG CAAGGAACTGTCTGACATTTCGATACTGCGAGGCTATGAAGGTGCN CCGACCGGTCGATACGCGCG TTACAAGAAAAAGCTCGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCTCAACGACAGCAACAATAACTAT ] [+] EMBL BX623120 [ AAAGGATCAAACTGAACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAA AAGAGCTCAAGGAGCAAAACGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCAGCGATCTGAAGGAGCGCTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAACTCAGCTCAAAGATGCACAGGCCGAACTATCGTCGAAAGACCAGGAAATTGTGCAGTTGAGAGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAA AAAAGGAGC TTGACTT TGATCTGGAAATTTCACAACTCAATCG CATTGTTATCTTCAAGGATCAGATCATCG TGC TGATGAACAACGA AATTCAGA AGTTACG CAAGGAACTGTCTGACATTTCGATACTGCGAGGCTATGAAGGTGCA CCGACCGGTCGATACGCGCG TTACAAGAAAAAGCTCGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCGCAACGACAGCAACAATAACAATCAGCTTACGAATAGCAATAGCGGCAGCAACAAACCAACAGACTCTCCAACGGGTGGGGGAAACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGATNAAGAAATTGTTTTTTGAGCTCGCAGATCTGTAACTACT CCGACGA NGACAAGTCG AACA TTAT ] [+] EMBL BX619437 [ AAAGTCTGAGATTANNAACAGGAGCGTTGACTTATGATCTGGAAATTTCACAACTCAATCGACATTGTTATTTACAAGGATCAGATCATCGCTGCNTGATGAACAACGANAATTCAGAGAGTTACGNCAAGGAACTGTCTGACATTTCGATACTGCGAGGCTATGAAGGTGCA CCGACCGGTCGATACGCGCG TTACAAGAAAAAGCTCGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCGCAACGACAGCAACAATAACAATCAGCTTACGAATAGCAATAGCGGCAGCAACAAACCAACAGACTCTCCTACGGGT GGGGAAACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGAT AAGAAATTGTTTCCTGAGCTCGCAGATCTGTAACTACTCCCGACGAGGGACAAGTCG AACATTTATCGATGCCTACNGCAGGTGGAAAACCGGGTTGATATCACTGATATCACGCTTNGATTTGAGCAGCCCTGCCTNGCCAAAC ] [+] EMBL BX623887 [ AACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGAT AAGAAATTG TTTCTGAGCTCGCAGATCTGTAACTACT CCGACGA GGAAAGGTCGAAACA TTATCGATGCGTACGGCA GTGGAAAACC GGTTGATATCACTGATATCACGC TCGATTTGAGCAG TCTG CT GCCAAACTCTCTGACTGCGACGACACATAACCCAGTGGATGATGTACCAGTCACTACTTCGGATAGCTATAATCATCACCACAGCTCATCCGACGATGATTACAAATCCATGACACCTACGCAGGAAGAGCATGTGCCGGCAGAGGCGCACGAAAAGGAATTGCACGTTTCTTCTGCCAAACCCATCGAAAGCTCGGGCCTAAAGGAAGGAAAGCATCAGCACAATAGTGTTGACGAGCTAGAACGGCTTAACCGGGAGCTAGCAGCATGCCGGGAATGCTTCGAACAGGAAAAAGCGAAATGGGCAGACGAAAAGGAAAAGGTGCTGATCTATCAGCGGCAGTTGCAGAAAAATTATGTCGAAATGTGCAAGCGCACACAGCTGCTCGAGGAGCAGCTCAAGACTATGCAGATAGAACAAGGTCATCGTGACTCTAGTCGAAACTAGAGCCCATTTAGACAATTGTGCTACGTCTATACCAAGACGAGCACGGCTATTAACGTANGTTTCCAAACGGACGTGAGCGTTT] [+] EMBL BX622632 [ CGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAAAGAACTATTTCAACAGCAAGCTCGAAATGGAT AAGAAATTG TTTCTGAGCTCGCAGATCTGTAACTACT CCGACGA GGACAAGTCG AACA TTATCGATGCGTACGGCA GTGGAAAACC GGTTGATATCACTGATATCACGC TCGATTTGAGCAG TCTG CT GCCAAACTCTCTGACTGCGACGACACATAACCCAGTGGATGATGTACCAGTCACTACTTCGGATAGCTATAATCATCACCACAGCTCATCCGACGATGATTACAAATCCATGACACCTACGCAGGAAGAGCATGTGCCGGCAGAGGCGCACGAAAAGGAATTGCACGTTTCTTCTGCCAAACCCATCGAAAGCTCGGGCCTAAAGGAAGGAAAGCATCAGCACAATAGTGTTGACGAGCTAGAACGGCTTAACCGGGAGCTAGCAGCATGCCGGGAATGCTTCGAACAGGAAAAAGCGAAATGGGCAGACGAAAAGGAAAAGGTGCTGATCTATCAGCGGCAGTTGCAGAAAAATTATGTCGAAATGTGCAAGCGCACACAGCTGCTCGAGGAGCAGCTCAAGACTATGCAGATAGAACAAGGTCATCGTGACTCTAGTCGAAACTAGAGCCCATTTAGACNATTGTGCTACGTCTATACCAAGACGAGCACGGC ] consensusID : consensus_7247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 88 fasta sequence [TCGCCCCGAGGCGTTTGAAAGACCAGAATGTGCAGTTGAGAGCAGACGTGAAGCTGCACACTATGACGACATTAGTTTGAAAAAGTCT] [+] EMBL AL933286 [TCGCCCCGAGGCGTTTGAAAGACCAGAATGTGCAGTTGAGAGCAGACGTGAAGCTGCACACTATGACGACATTAGTTTGAAAAAGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7247#0 GGAGCTGAACCGACTGAAAGCGATACACGAAAGCCGTTTGCGAGCCGGTGCTCAGAAGGT 60 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 TCACAAACTCGAGCAACTGCTCATGATGCAAACGTTTCAGCTGCGGCAGGATAAGAAGCG 120 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 TTTACAAGAGGATAACGCACGACTGCAAACAGGCATAGCGCAAGCAAAGGATCAAACTGA 180 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 ACTGCACAAATCGGAACTGGAGCAGGCCCAACTTACTACAAAAGAGCTCAAGGACCAAAA 240 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 CGGAGATTTGTTGGACGAAATTCAGATGCTGCGACGAATAATCAGCGATCTGAAGGAGCG 300 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 CTTGGAGGAAAGTGAATGGAACCTCTGTCAGAAAAATGGTGAAATAGCTCTGATGAAAAC 360 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 TCAGCTCAAAGATGCACAGGCCGAACTATCGTCGAAAGACCAAGAAATTGTGCAGTTGAG 420 consensus_7247#1 ---------------TCGCCCCGAGGCGT--TTGAAAGACCAGAA---TGTGCAGTTGAG 40 * **** * * ********* * ************ consensus_7247#0 AGCAGACGTGAAGCTGCAACACTATGACGACATTAGTTTGAAAAAGTCTGAGATAAAAAA 480 consensus_7247#1 AGCAGACGTGAAGCTGCA-CACTATGACGACATTAGTTTGAAAAAGTCT----------- 88 ****************** ****************************** consensus_7247#0 GGAGCTTGACTTTGATCTGGAAATTTCACAACTCAATCGCATTGTTATCTTCAAGGATCA 540 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 GATCATCGTGCTGATGAACAACGAAATTCAGAAGTTACGCAAGGAACTGTCTGACATTTC 600 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 GATACTGCGAGGCTATGAAGGTGCACCGACCGGTCGATACGCGCGTTACAAGAAAAAGCT 660 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 CGAGCTCGTTGCACAAAAGTTCGAGGAAACGGAGCTCCGCAACGACAGCAACAATAACAA 720 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 TCAGCTTACGAATAGCAATAGCGGCAGCAACAAACCAACAGACTCTCCAACGGGTGGGGG 780 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 AAACCACCGAGAAGCAAGCGGCTTCCCCGTCGGCAATGATCTCCAGCAGCGACATCATAA 840 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 AGAACTATTTCAACAGCAAGCTCGAAATGGATAAGAAATTGTTTTCTGAGCTCGCAGATC 900 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 TGTAACTACTCCGACGAGGACAAGTCGAACATTATCGATGCGTACGGCAGTGGAAAACCG 960 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 GTTGATATCACTGATATCACGCTCGATTTGAGCAGTCTGCTGCCAAACTCTCTGACTGCG 1020 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 ACGACACATAACCCAGTGGATGATGTACCAGTCACTACTTCGGATAGCTATAATCATCAC 1080 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 CACAGCTCATCCGACGATGATTACAAATCCATGACACCTACGCAGGAAGAGCATGTGCCG 1140 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 GCAGAGGCGCACGAAAAGGAATTGCACGTTTCTTCTGCCAAACCCATCGAAAGCTCGGGC 1200 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 CTAAAGGAAGGAAAGCATCAGCACAATAGTGTTGACGAGCTAGAACGGCTTAACCGGGAG 1260 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 CTAGCAGCATGCCGGGAATGCTTCGAACAGGAAAAAGCGAAATGGGCAGACGAAAAGGAA 1320 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 AAGGTGCTGATCTATCAGCGGCAGTTGCAGAAAAATTATGTCGAAATGTGCAAGCGCACA 1380 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 CAGCTGCTCGAGGAGCAGCTCAAGACTATGCAGATAGAACAAGGTCATCGTGACTCTAGT 1440 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 CGAAACTAGAGCCCATTTAGACAATTGTGCTACGTCTATACCAAGACGAGCACGGCTATT 1500 consensus_7247#1 ------------------------------------------------------------ consensus_7247#0 AACGTANGTTTCCAAACGGACGTGAGCGTTT 1531 consensus_7247#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||