These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 705 fasta sequence [AGCAGAATCGGCACGTGGAGAAGACGGACTCGCGCTCACGAAGGAGCTGTCCGAGCTGGAGCGTTCCGTGCGGGACCAGGAGTACGTGCTGGAGAAGGTCGCCACGAACAGTGTGGAAATGGCTCGACAGCTGGAAGAGAGCCAGCAGGCAACGCAGCAGCAGATATCGGATTTGCAACACTGCTACTATCAACGGCAAAATCCACCCCTTTTCATCTACCAAATGCCGATCGACCAGTTCGACGCAAAGTGTGACCAGTTTCTTAAGTACCTGGAGCTGTACGTGAAGAAGCACTTCACCGTGAAACGGCTCGACAACTCAAAGTCAACGGACGATGGGGACAATCAGCAGGTGATCGATGAGCTGGAGGGCATTAAGATGCGCCTGGACGAGGAGGAGCTGAAGCTGCTGGAGGCAAAGCGCGAGTATGCCGGCGTGATGAAGCTTGTCGAGCGCTTGCAGGGCCATAGCTGGATGCCGCTGAAAGTGTCCGCGCTAAAGAAAACAGTGCGTCGAGCTGAGGGCCGCCAACGAGCAGGACCTGTTGCGGATGGATTTGCTGAAGCACGAGCTCGACAACGCTCATCAGGGCAGGGTGAATTGAGGCTTGACAGATCGAATTCGGTACCTGTACGAAGAACAAGCCGGGGTCAAGCTTAAACCGTGCGGTCAGCCNGGCATTGGAGTACCANTCCAGNGGGTTT] [+] EMBL BX467969 [AGCAGAATCGGCACGTGGAGAAGACGGACTCGCGCTCACGAAGGAGCTGTCCGAGCTGGAGCGTTCCGTGCGGGACCAGGAGTACGTGCTGGAGAAGGTCGCCACGAACAGTGTGGAAATGGCTCGACAGCTGGAAGAGAGCCAGCAGGCAACGCAGCAGCAGATATCGGATTTGCAACACTGCTACTATCAACGGCAAAATCCACCCCTTTTCATCTACCAAATGCCGATCGACCAGTTCGACGCAAAGTGTGACCAGTTTCTTAAGTACCTGGAGCTGTACGTGAAGAAGCACTTCACCGTGAAACGGCTCGACAACTCAAAGTCAACGGACGATGGGGACAATCAGCAGGTGATCGATGAGCTGGAGGGCATTAAGATGCGCCTGGACGAGGAGGAGCTGAAGCTGCTGGAGGCAAAGCGCGAGTATGCCGGCGTGATGAAGCTTGTCGAGCGCTTGCAGGGCCATAGCTGGATGCCGCTGAAAGTGTCCGCGCTAAAGAAAACAGTGCGTCGAGCTGAGGGCCGCCAACGAGCAGGACCTGTTGCGGATGGATTTGCTGAAGCACGAGCTCGACAACGCTCATCAGGGCAGGGTGAATTGAGGCTTGACAGATCGAATTCGGTACCTGTACGAAGAACAAGCCGGGGTCAAGCTTAAACCGTGCGGTCAGCCNGGCATTGGAGTACCANTCCAGNGGGTTT] consensusID : consensus_725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [TTGTTATTTTGTACGGCATTCAACAGCGACCCTGTNNAAATCGTACAAAATGGAAGAATCAAGCAAGGTACTGGAAACGCTTAAAAAGATCGGCGGCATCGACGTGCGTCACCTGTGGATCATACACGATGAAACGTTTCGCGAGTTTTTCGATTGGTTCACCAAAATTGACGATGACAATCTTGTTACGGACATGCTGTTGAAGAACTACCAAGAGCTCGATCGCAATGGAACCGTGTTGAACGATGCACTGTTAGAAGAGCAACTGCACGCACTGAACCACGAGTTTAGCGGCATTCTCGAGCACACGGATCGCGATGTGGAAGCATTGGAGCTGCAGCTCGAGCAGCTGGTGGAGGTGGAGGAAAAGTACGAGAAACTGCTGAACGGTGCCAAGAAGACNGACCTCGCGCTCACGAAGGAGCTGTCCGAGCNGGAGCGTTCCGTGCGGGACCAGGAGTACG] [+] EMBL BX619735 [TTGTTATTTTGTACGGCATTCAACAGCGACCCTGTNNAAATCGTACAAAATGGAAGAATCAAGCAAGGTACTGGAAACGCTTAAAAAGATCGGCGGCATCGACGTGCGTCACCTGTGGATCATACACGATGAAACGTTTCGCGAGTTTTTCGATTGGTTCACCAAAATTGACGATGACAATCTTGTTACGGACATGCTGTTGAAGAACTACCAAGAGCTCGATCGCAATGGAACCGTGTTGAACGATGCACTGTTAGAAGAGCAACTGCACGCACTGAACCACGAGTTTAGCGGCATTCTCGAGCACACGGATCGCGATGTGGAAGCATTGGAGCTGCAGCTCGAGCAGCTGGTGGAGGTGGAGGAAAAGTACGAGAAACTGCTGAACGGTGCCAAGAAGACNGACCTCGCGCTCACGAAGGAGCTGTCCGAGCNGGAGCGTTCCGTGCGGGACCAGGAGTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_725#0 AGCAGAATCGGCACGTGGAGAAGACGGACTCGCGCTCACGAAGGAGCTGTCCGAGCTGGA 60 consensus_725#1 ------------------------------------------------------------ consensus_725#0 GCGTTCCGTGCGGGACCAGGAGTACGTGCTGGAGAAGGTCGCCACGAACAGTGTGGAAAT 120 consensus_725#1 ---------------TTGTTATTTTGTACGGCAT----TCAACAGCGACCCTGTNNAAAT 41 * * ** * * * ** ** ** *** **** consensus_725#0 GGCTCGACAGCTGGAAGAGAGCCAGCAGGCAACGCAGCAGCAGATATCG-GATTTGCAAC 179 consensus_725#1 CGTACAAAA--TGGAAGA-ATCAAGCAAGGTAC-TGGAAACGCTTAAAAAGATCGGCGGC 97 * * * * ******* * * **** * ** * * * ** *** ** * consensus_725#0 ACTGCTAC-TATCAACGGCAAAATCCACCCCTTTTCATCTACCAAATGCCGATCGACCAG 238 consensus_725#1 ATCGACGTGCGTCACCTGTGGATCATACACGATGAAACGTTTCGCGAGTTTTTCGATTGG 157 * * *** * * * ** * * * * * * **** * consensus_725#0 TTCGACGCAA---AGTGTGACCAGTTTCTTAAGTACCTGGAGCTGTACG-TGAAGAAGCA 294 consensus_725#1 TTCACCAAAATTGACGATGACAATCTTGTTACGGACATGCTGTTGAAGAACTACCAAGAG 217 *** * ** * **** * ** *** * ** ** * ** * * *** consensus_725#0 CTTCACCGTGAAACGGCTCGACAACTCAAAGTCAACGGACGATGGGGACAATCAGCAGGT 354 consensus_725#1 CTCGATCGCAATGGAACCGTGTTGAACGATG-CACTGTTAGAAGAGCAACTGCACGCACT 276 ** * ** * * * * * ** * ** * * * ** * consensus_725#0 GATCGATGAGCTGGAGGGCATTAAGATGCGCCTGGACGAGGAGGAGCTGAAGCTGCTGGA 414 consensus_725#1 GAACCACGAGTTTAGCGGCATTCTCGAGCACACGGATCGCGATG---TGGAAGCATTGGA 333 ** * * *** * ****** ** * *** ** * ** * **** consensus_725#0 GGCAAAGCGCGAGTATGCCGGCGTGATGAAGCTTGTCGAGCGCTTGCAGGGCCATAGCTG 474 consensus_725#1 GCTGCAGCTCGAGCA---------------GCTGGTGGAGG---TGGAGGAAAAGTACGA 375 * *** **** * *** ** *** ** *** * * consensus_725#0 GATGCCGCTGAAAGTGTCCGCGCTAAAGAAAACAGTGCGTCGAGCTGAGGGCCGCCAACG 534 consensus_725#1 GAAACTGCTGAACGGTGCCAAG--AAGACNGACCTCGCGCTCACGAAGGAGCTGTC--CG 431 ** * ****** * ** * ** ** *** * * ** * * ** consensus_725#0 AGCAGGACCTGTTGCGGATGGATTTGCTGAAGCACGAGCTCGACAACGCTCATCAGGGCA 594 consensus_725#1 AGCNGGAGC-GTTCCGTGCGGGAC--CAGGAGTACG------------------------ 464 *** *** * *** ** ** * * ** *** consensus_725#0 GGGTGAATTGAGGCTTGACAGATCGAATTCGGTACCTGTACGAAGAACAAGCCGGGGTCA 654 consensus_725#1 ------------------------------------------------------------ consensus_725#0 AGCTTAAACCGTGCGGTCAGCCNGGCATTGGAGTACCANTCCAGNGGGTTT 705 consensus_725#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||