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Anopheles gambiae
cluster # 7251 cluster # 7251       Sequences # 7       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7251#0 length = 1488 sequences # 3  
consensus_7251#1 length = 735 sequences # 1  
consensus_7251#2 length = 613 sequences # 1  
consensus_7251#3 length = 394 sequences # 1  
consensus_7251#4 length = 187 sequences # 1  

consensusID : consensus_7251#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1488
fasta sequence
                              [CCGGTTGGAGAAATAGCACCGTCGTGAATCAGTATCATAAATCCCAAAAATACTACGTTATTGAAAGCATATTTTAGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAAACAGGCACCGATCGGGGCCGTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGCCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAGGGCGTCTTGAAGTCAAGATTTTCCGACTTTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAACCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGGTCGATCCGAACGAGGAGCTCGCCCGATTAATCGGGCCGGAGAACGTGAAAGGCTGCAGGAAGTCGTGGCCGGCATTGGCGACCCATCCGTGAGCGTGGGCAACTTTACCTTCAAGCCGGACACGCTGAAGCTGGGCCAGTTGCAGGGCAACCGGTTCCGGATAGCGCTGCGCCAGGTGACGGCCAGCGATGACACGATCAACGCCTGCCTAGAAGCGTTCCGGGAGAAGGGATTCATCAACTACTACGGTTTGCAGCGATTCGGCAACAGTGCGGCGGTGCCAACGTACAAGATCGGGATCGAGATGCTGAAGGGCAACTGGAAGGGTGCGTGCGATCTGATACTGCAACCGCGCGAAGACGAACCACCGTTCATGGTGGAGATGCGCTCGATCTGGTCGAAGACGCGCAACGCAGCGGAAGCGCTGAAAAAGCTGCGCCCATCGAACAAATCGGTCGAAGCGGTGCTGCTGCCCGGGCATGACATCACCTACCCGGACAATGAGTGTGCCCGCTGGTACGAGGAAGCGCTGGCCGAAAATGGGCTGTCGTCGGAGAAGCTGCAGCTGAAATCGAAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAAAACGTCCCCGAACCACCGTTTGCCGAATGGGCTGCAAAAGAATCGGCCCACAAGGCAGTGCTGCTAGACTTTCGCCTTCCTACGTCCACGTACGCGACGATGGCACTGCGCGAGCTTCTCAAAACCGATACCTCCTCCAGTAACCAACGAACGCTGGAAAAGTTGGGCCAGGCTGTTGTCGCCCGAGCAGAGGACGAGACGACGGAGGAGAAAAAAGCGGATGAAGAAAATGAATCGTGCCGGCTACGGACGATGAGCCTCAATCGAAAGTGGTGAAGCTGGCTGAATAGTTATTTACCTTTTATCTTAATGGAACTGAATTGTGTGAAGTTTTTTTCTATAAAGAGAACTATTTTCATTTAGGGTGG]

[+] EMBL CNS092UK             [CCGGTTGGAGAAATAGCACCGTCGTGAATCAGTATCATAAATCCCAAAAATACTACGTTATTGAAAGCATATTTTAGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAAACAGGCACCGATCGGGGCCGTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGCCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAGGGCGTCTTGAAGTCAAGATTTTCCGACTTTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAACCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGGTCGATCCGAACGAGGAGCTCGCCCGATTAATCGGGCCGGAGAACGTGAAAGGCTGCAGGAAGTCGTGGCCGGCATTGGCGACCCATCCGTGAGCGTGGGCAACTTTACCTTCAAGCCGGACACGCTGAAGCTGGGCCAGTTGCAGGGCAACCGGTTCCGGATAGCGCTGCGCCAGGTGACGGCCAGCGATGACACGATCAACGCCTGCCTAGAAGCGTTCCGGGAGAAGGGATTCATCAACTACTACGGTTTGCAGCGATTCGGCAACAGTGCGGCGGTGCCAACGTACAAGATCGGGATCGAGATGCTGAAGGGCAACTGGAAGGGTGCGTGCGATCTGATACTGCAACCGCGCGAAGACGAACCACCGTTCATGGTGGAGATGCGCTCGATCTGGTCGAAGACGCGCAACGCAGCGGAAGCGCTGAAAAAGCTGCGCCCATCGAACAAATCGGTCGAAGCGGTGCTGCTGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CNS092UL             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGACGGCCAGCGATAACACGATCAACGCCTGCCTAGAAGCGTTCCGGGAGAAGGGATTCATCAACTACTACGGTTTGCAGCGATTCGGCAACAGTGCGGCGGTGCCAACGTACAAGATCGGGATCGAGATGCTGAAGGGCAACTGGAAGGGTGCGTGCGATCTGATACTGCAACCGCGCGAAGACGAACCACCGTTCATGGTGGAGATGCGCTCGATCTGGTCGAAAACGCGCAACGCAGCGGAAGCGCTGAAAAAAGTGCGCCCATCGAACAAATCGGTCGAAGCGGTGCTGCTGCCCGGGCATGACATCACCTACCCGGACAATGAGTGTGCCCGCTGGTACGAGGAAGCGCTGGCCGAAAATGGGCTGTCGTCGGAGAAGCTGCAGCTGAAATCGAAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAAAACGTCCCCGAACCACCGTTTGCCGAATGGGCTGCAAAAGAATCGGCCCACAAGGCAGTGCTGCTAGACTTTCGCCTTCCTACGTCCACGTACGCGACGATGGCACTGCGCGAGCTTCTCAAAACCGATACCTCCTCCAGTAACCAACGAACGCTGGAAAAGTTGGGCCAGGCTGTTGTCGCCCGAGCAGAGGACGAGACGACGGAGGAGAAAAAAGCGGATGAAGAAAATGAATCGTGCCGGCTACGGACGATGAGCCTCAATCGAAAGTGGTGAAGCTGGCTGAATAGTTATTTACCTTTTATCTTAATGGAACTGAATTGTGTGAAGTTTTTTTCTATAAAGAGAACTATTTTCATTTAGGGTGG]
[-] EMBL CNS08F5F             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCCCGGGCATGACATCACTTTTCCGGACAATGAGTGTGCCCGCTGGTACGAGGAAGCGCTGGCCGAAAATGAGCTGTCGTCGGAGAAGCTGCAGCTGAAATCGAAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAAAACGTCCCCGAACCACCGTTTGCCGAATGGGCTGCAAAAGAATCGGCCCACAAGGCAGTGCTGCTAGACTTTCGCCTTCCTACGTCCACGTACGCGACGATGGCACTGCGCGAGCTTCTCAAAACCGATACCTCCTCCAGTAACCAACGAACGCTGGAAAAGTTGGGCCAGGCTGTTGTCGCCCGAGCAGAGGACGAGACGACGGAGGAGAAAAAAGCGGATGAAGAAAATGAATCGTTCCGGCTACGGACGATGAGCCTCAATCGAAAGTGGTGAAGCTGACTGAATAGTTATTTACCTTTTATCTTAATGGAACTGAATTGTGTGAAGTTTTTTTCTATAAAGAGAgaaattc             ]


>consensus_7251#0 CCGGTTGGAGAAATAGCACCGTCGTGAATCAGTATCATAAATCCCAAAAATACTACGTTA TTGAAAGCATATTTTAGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAA ACAGGCACCGATCGGGGCCGTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGCCGG GGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAA AGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAGGGCGTCTTGAAGT CAAGATTTTCCGACTTTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAA CCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGG TCGATCCGAACGAGGAGCTCGCCCGATTAATCGGGCCGGAGAACGTGAAAGGCTGCAGGA AGTCGTGGCCGGCATTGGCGACCCATCCGTGAGCGTGGGCAACTTTACCTTCAAGCCGGA CACGCTGAAGCTGGGCCAGTTGCAGGGCAACCGGTTCCGGATAGCGCTGCGCCAGGTGAC GGCCAGCGATGACACGATCAACGCCTGCCTAGAAGCGTTCCGGGAGAAGGGATTCATCAA CTACTACGGTTTGCAGCGATTCGGCAACAGTGCGGCGGTGCCAACGTACAAGATCGGGAT CGAGATGCTGAAGGGCAACTGGAAGGGTGCGTGCGATCTGATACTGCAACCGCGCGAAGA CGAACCACCGTTCATGGTGGAGATGCGCTCGATCTGGTCGAAGACGCGCAACGCAGCGGA AGCGCTGAAAAAGCTGCGCCCATCGAACAAATCGGTCGAAGCGGTGCTGCTGCCCGGGCA TGACATCACCTACCCGGACAATGAGTGTGCCCGCTGGTACGAGGAAGCGCTGGCCGAAAA TGGGCTGTCGTCGGAGAAGCTGCAGCTGAAATCGAAAAGTCTTTCGCTGGCCGGCGCATA CCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACGGTACGCAAACCC GACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAAAACGTCCCCGAACCACCGTT TGCCGAATGGGCTGCAAAAGAATCGGCCCACAAGGCAGTGCTGCTAGACTTTCGCCTTCC TACGTCCACGTACGCGACGATGGCACTGCGCGAGCTTCTCAAAACCGATACCTCCTCCAG TAACCAACGAACGCTGGAAAAGTTGGGCCAGGCTGTTGTCGCCCGAGCAGAGGACGAGAC GACGGAGGAGAAAAAAGCGGATGAAGAAAATGAATCGTGCCGGCTACGGACGATGAGCCT CAATCGAAAGTGGTGAAGCTGGCTGAATAGTTATTTACCTTTTATCTTAATGGAACTGAA TTGTGTGAAGTTTTTTTCTATAAAGAGAACTATTTTCATTTAGGGTGG



consensusID : consensus_7251#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence
                              [CCGCCGTCGTGAATCAGTATCATAAATCCCAAAAATACTACGTTATTGAAAGCATATTTTAGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAAACAGGCACCGATCGGGGCCGTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGTCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAAGGCGTCTTGAAGTCAAGATTTTCCGACTTTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAACCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGGTCGATCCGAACGAGGAGCTCGCCCGATTAATCGGGCCGGAGAACGTGAAACGGCTGCAGGAAGTCGTGGCCGGCATTGGCGACCCATCCGTGAGCGTTGATGTTACCGAGATGGACAAAGAGCAGCGCACGGCAATCCACAACCGCGTGAAGGCAGTGTTCGGTGCCGCCGTCGTCGGGTCGACCGTCACCGAGGGCGACCGCAAGTTGATACGGATCACCAAGTACAGCAAATCGATGACGCGGGACCGGCGCGAAAAGTGGCAGTGGCCCCATCCGTACACGTACTTTCTGCTGTACAAGGAAAATCTCGACACCATCCAGGCGACGA]

[+] EMBL BM617929             [CCGCCGTCGTGAATCAGTATCATAAATCCCAAAAATACTACGTTATTGAAAGCATATTTTAGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAAACAGGCACCGATCGGGGCCGTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGTCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAAGGCGTCTTGAAGTCAAGATTTTCCGACTTTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAACCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGGTCGATCCGAACGAGGAGCTCGCCCGATTAATCGGGCCGGAGAACGTGAAACGGCTGCAGGAAGTCGTGGCCGGCATTGGCGACCCATCCGTGAGCGTTGATGTTACCGAGATGGACAAAGAGCAGCGCACGGCAATCCACAACCGCGTGAAGGCAGTGTTCGGTGCCGCCGTCGTCGGGTCGACCGTCACCGAGGGCGACCGCAAGTTGATACGGATCACCAAGTACAGCAAATCGATGACGCGGGACCGGCGCGAAAAGTGGCAGTGGCCCCATCCGTACACGTACTTTCTGCTGTACAAGGAAAATCTCGACACCATCCAGGCGACGA]


>consensus_7251#1 CCGCCGTCGTGAATCAGTATCATAAATCCCAAAAATACTACGTTATTGAAAGCATATTTT AGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAAACAGGCACCGATCGG GGCCGTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGTCGGGGAACAATAATCGTC CACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAAAGGATATCTTCTGTA CGGAATACGTTTCGAAGCTGGAAGGCTTTCAAGGCGTCTTGAAGTCAAGATTTTCCGACT TTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAACCGACTTTTCCGTAC CCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGGTCGATCCGAACGAGG AGCTCGCCCGATTAATCGGGCCGGAGAACGTGAAACGGCTGCAGGAAGTCGTGGCCGGCA TTGGCGACCCATCCGTGAGCGTTGATGTTACCGAGATGGACAAAGAGCAGCGCACGGCAA TCCACAACCGCGTGAAGGCAGTGTTCGGTGCCGCCGTCGTCGGGTCGACCGTCACCGAGG GCGACCGCAAGTTGATACGGATCACCAAGTACAGCAAATCGATGACGCGGGACCGGCGCG AAAAGTGGCAGTGGCCCCATCCGTACACGTACTTTCTGCTGTACAAGGAAAATCTCGACA CCATCCAGGCGACGA



consensusID : consensus_7251#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [TACCAAAGCTTGATCTGGAATCGGGTCGCCTCGGAACGCATACGAAAGTATGGCTTTCAACCGGTCGAGGGTGATTTGGTGTACGCCGACAGGCAAAATACTCCGACGGTTGTGGAACCGTTCGACGGCGGAGAGGAAGGCGATTTGGATGCCGTCGAAGCGCTCGAAGCGCAGGAGGAAGAACCGGAACAGGGAGGAGAGGAAGCTAACGATGGCACATCGGACACATCGTACTTAAGAATCTTGTACGACCGCTAACGGCCGACGATATCGCTGCGGCACGGTACACCATGTTCGATATCGTACTTCCCCTGCCCGGGCATGACATCACCTACCCGGACAATGAGTGTGCCCGCTGGTACGAGGAAGCGCTGGCCGAAAATGAGCTGTCGTCGGAGAAGCTGCAGCTGAAATCGAAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAAAACGTCCCCGAACCACCGTTTGCCGAATGGGCTGCAAAAGAATCGGCCCACAAGGCAGTGCTGCTAGACTT]

[+] EMBL BX601968             [TACCAAAGCTTGATCTGGAATCGGGTCGCCTCGGAACGCATACGAAAGTATGGCTTTCAACCGGTCGAGGGTGATTTGGTGTACGCCGACAGGCAAAATACTCCGACGGTTGTGGAACCGTTCGACGGCGGAGAGGAAGGCGATTTGGATGCCGTCGAAGCGCTCGAAGCGCAGGAGGAAGAACCGGAACAGGGAGGAGAGGAAGCTAACGATGGCACATCGGACACATCGTACTTAAGAATCTTGTACGACCGCTAACGGCCGACGATATCGCTGCGGCACGGTACACCATGTTCGATATCGTACTTCCCCTGCCCGGGCATGACATCACCTACCCGGACAATGAGTGTGCCCGCTGGTACGAGGAAGCGCTGGCCGAAAATGAGCTGTCGTCGGAGAAGCTGCAGCTGAAATCGAAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAAAACGTCCCCGAACCACCGTTTGCCGAATGGGCTGCAAAAGAATCGGCCCACAAGGCAGTGCTGCTAGACTT]


>consensus_7251#2 TACCAAAGCTTGATCTGGAATCGGGTCGCCTCGGAACGCATACGAAAGTATGGCTTTCAA CCGGTCGAGGGTGATTTGGTGTACGCCGACAGGCAAAATACTCCGACGGTTGTGGAACCG TTCGACGGCGGAGAGGAAGGCGATTTGGATGCCGTCGAAGCGCTCGAAGCGCAGGAGGAA GAACCGGAACAGGGAGGAGAGGAAGCTAACGATGGCACATCGGACACATCGTACTTAAGA ATCTTGTACGACCGCTAACGGCCGACGATATCGCTGCGGCACGGTACACCATGTTCGATA TCGTACTTCCCCTGCCCGGGCATGACATCACCTACCCGGACAATGAGTGTGCCCGCTGGT ACGAGGAAGCGCTGGCCGAAAATGAGCTGTCGTCGGAGAAGCTGCAGCTGAAATCGAAAA GTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGA GCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGA AAAACGTCCCCGAACCACCGTTTGCCGAATGGGCTGCAAAAGAATCGGCCCACAAGGCAG TGCTGCTAGACTT



consensusID : consensus_7251#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence
                              [ATTTTAGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAAACAGGCACCGAATCGGGACCGTTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGTCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAAGGCGTCTTGAAGTCAAGATTTTCCGACTTTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAGCCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGGTCGATCCAAAACGACCCAGTGGATGTGCATAAAAGACGCGCG]

[+] EMBL CNS08F5E             [ATTTTAGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAAACAGGCACCGAATCGGGACCGTTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGTCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAAGGCGTCTTGAAGTCAAGATTTTCCGACTTTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAGCCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGGTCGATCCAAAACGACCCAGTGGATGTGCATAAAAGACGCGCG]


>consensus_7251#3 ATTTTAGTGCCACTTTCCAGTAACGATGAAGCGGGGAAGATTTAACCAAAACAGGCACCG AATCGGGACCGTTTCCAGTCCCGCGGACCATTCCAGTCTCGTGGGCCGTCGGGGAACAAT AATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGCATTGCGGAAAAGGATATC TTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAAGGCGTCTTGAAGTCAAGATTT TCCGACTTTCATGTGAACGAAATCAACGCCGATGGAGAGGAAGCGATCCTAGCCGACTTT TCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGCAGGAAGCGCCGGTCGATCCA AAACGACCCAGTGGATGTGCATAAAAGACGCGCG



consensusID : consensus_7251#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence
                              [ACGACNAAAGATGCGCCAAGGCAAGAATCGCACGAGGTTNAAATCGAAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAGACAACGTCCCCGCAA]

[+] EMBL BX469034             [ACGACNAAAGATGCGCCAAGGCAAGAATCGCACGAGGTTNAAATCGAAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAGACAACGTCCCCGCAA]


>consensus_7251#4 ACGACNAAAGATGCGCCAAGGCAAGAATCGCACGAGGTTNAAATCGAAAAGTCTTTCGCT GGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGAGCATTGTACG GTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGAAGACAACGTC CCCGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      ------------------------------------------------------------
consensus_7251#2      TACCAAAGCTTGATCTGGAATCGGGTCGCCTCGGAACGCATACGAAAGTATGGCTTTCAA 60
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ----------------------CCGCCGTCGTGAATCAGTATCATAAATCCCAAAAATAC 38
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      -------CCGGTTGGAGAAATAGCACCGTCGTGAATCAGTATCATAAATCCCAAAAATAC 53
consensus_7251#2      CCGGTCGAGGGTGATTTGGTGTACGCCGACAGGCAAAATACTCCGACGGTTGTGGAACCG 120
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      TACGTTATTGAAAGCATATTTTAGTGCCACTTTCCAGTAACGAT-GAAGCGGGGAAGATT 97
consensus_7251#3      -----------------ATTTTAGTGCCACTTTCCAGTAACGAT-GAAGCGGGGAAGATT 42
consensus_7251#0      TACGTTATTGAAAGCATATTTTAGTGCCACTTTCCAGTAACGAT-GAAGCGGGGAAGATT 112
consensus_7251#2      TTCGACGGCGGAGAGGAAGGCGATTTGGATGCCGTCGAAGCGCTCGAAGCGCAGGAGGAA 180
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      TAACCAAAACAGGCACCGA-TCGGGGCCGTT-CCAGTCCCGCGGACCATTCCAGTCTCGT 155
consensus_7251#3      TAACCAAAACAGGCACCGAATCGGGACCGTTTCCAGTCCCGCGGACCATTCCAGTCTCGT 102
consensus_7251#0      TAACCAAAACAGGCACCGA-TCGGGGCCGTT-CCAGTCCCGCGGACCATTCCAGTCTCGT 170
consensus_7251#2      GAACCGGAACAGGGAGGAG-AGGAAGCTAACGATGGCACATCGGAC-ACATCGTACTTAA 238
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      GGGCCGTCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGC 215
consensus_7251#3      GGGCCGTCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGC 162
consensus_7251#0      GGGCCGCCGGGGAACAATAATCGTCCACCCCGGAGCACGAACACCATTCGCACGTCCTGC 230
consensus_7251#2      GAATCTTGTACGACCGCTAACGGCCGACGATATCGCTGCGGCACGGTACAC-CATGTTCG 297
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAAGGC 275
consensus_7251#3      ATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAAGGC 222
consensus_7251#0      ATTGCGGAAAAGGATATCTTCTGTACGGAATACGTTTCGAAGCTGGAAGGCTTTCAGGGC 290
consensus_7251#2      ATATCGTACTTCCCCTGCCCGGGCATGACATCACCTACCCGGACAATGAGTGTGCCCGCT 357
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      GTCTTGAAGTCAAGATTTTCCGACTTTCA-TGTGAACGAAATCAA-CGCCGATGGAGAGG 333
consensus_7251#3      GTCTTGAAGTCAAGATTTTCCGACTTTCA-TGTGAACGAAATCAA-CGCCGATGGAGAGG 280
consensus_7251#0      GTCTTGAAGTCAAGATTTTCCGACTTTCA-TGTGAACGAAATCAA-CGCCGATGGAGAGG 348
consensus_7251#2      GGTACGAGGAAGCGCTGGCCGAAAATGAGCTGTCGTCGGAGAAGC-TGCAGCTGAAATCG 416
consensus_7251#4      --------------ACGACNAAAGATGCGCCAAGGCAAGAATCGCACGAGGTTNAAATCG 46
                                            *  *             *       *  * *  *   *

consensus_7251#1      AAGCGATCCTAACCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGC 393
consensus_7251#3      AAGCGATCCTAGCCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGC 340
consensus_7251#0      AAGCGATCCTAACCGACTTTTCCGTACCCAAACCGGTCGCAGCGGCGGATGCCAACGAGC 408
consensus_7251#2      AAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGG-AACGTTTAGA 475
consensus_7251#4      AAAAGTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGG-AACGTTTAGA 105
                      **  *    *  * * *     * ****  ** * **    *** * *    *    ** 

consensus_7251#1      AGGAAGCGCCGGTCGATCCGAA----CGAGGAGCTCGCCCGATTAATCGG-GCCGGAGAA 448
consensus_7251#3      AGGAAGCGCCGGTCGATCCAAA------ACGA-----CCCAGTGGATGTG-CATAAAAGA 388
consensus_7251#0      AGGAAGCGCCGGTCGATCCGAA----CGAGGAGCTCGCCCGATTAATCGG-GCCGGAGAA 463
consensus_7251#2      GTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAA 535
consensus_7251#4      GTGGAGCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAA 165
                        * ***   *  ** * *  *      *        * *  *   *  *      *  *

consensus_7251#1      CGTGAAAC----GGCTGCAGGAAGTCGTGGCCGGCATTGGCGACCCATCCGTGAGCGTTG 504
consensus_7251#3      CGCGCG------------------------------------------------------ 394
consensus_7251#0      CGTGAAA-----GGCTGCAGGAAGTCGTGGCCGGCATTGGCGACCCATCCGTGAGCGTGG 518
consensus_7251#2      GATGAAAA--ACGTCCCCGAACCACCGTTTGCCGAATGGGCTGCAAAAGAATCGGCCCAC 593
consensus_7251#4      GATGAAGACAACGTCCCCGCAA-------------------------------------- 187
                         *                                                        

consensus_7251#1      A------TGTTACCGAGATGGACAAA---GAGCAGCGCACGGCAATCCACAACCGCGTGA 555
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      GCAACTTTACCTTCAAGCCGGACACGCTGAAGCTGGGCCAGTTGCAGGGCAACCGGTTCC 578
consensus_7251#2      AAGGCAGTGCTGCTAGACTT---------------------------------------- 613
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      AGGCAGTGTTCGGTGCCGCCGTCGTCGGGTCGACCGTCACCGAGGGCGACCGCAAGTTGA 615
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      GGATAGCGCTGCGCCAGGTGACGGCCAGCGATGACACGATCAACGCCTGCCTAGAAGCGT 638
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      TACGGATCACCAAGTACAGCAAAT-CGATGACGCGGGACCGGCGCGAAAAGTGGCAGTGG 674
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      TCCGGGAGAAGGGATTCATCAACTACTACGGTTTGCAGCGATTCGGCAACAGTGCGGCGG 698
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      CCCCATCCGTACACGTACTTTCTGCTGTACAAGGAAAATCTCGACACCATCCAGGCGACG 734
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      TGCCAACGTACAAGATCGGGATCGAGATGCTGAAGGGCAACTGGAAGGGTGCGTGCGATC 758
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      A----------------------------------------------------------- 735
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      TGATACTGCAACCGCGCGAAGACGAACCACCGTTCATGGTGGAGATGCGCTCGATCTGGT 818
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      CGAAGACGCGCAACGCAGCGGAAGCGCTGAAAAAGCTGCGCCCATCGAACAAATCGGTCG 878
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      AAGCGGTGCTGCTGCCCGGGCATGACATCACCTACCCGGACAATGAGTGTGCCCGCTGGT 938
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      ACGAGGAAGCGCTGGCCGAAAATGGGCTGTCGTCGGAGAAGCTGCAGCTGAAATCGAAAA 998
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      GTCTTTCGCTGGCCGGCGCATACCGGAAGCTGTTCGTGCGCCCGGAACGTTTAGAGTGGA 1058
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      GCATTGTACGGTACGCAAACCCGACCGACACGCTCATTCTTTCCGACCTGGAAAAGATGA 1118
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      AAAACGTCCCCGAACCACCGTTTGCCGAATGGGCTGCAAAAGAATCGGCCCACAAGGCAG 1178
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      TGCTGCTAGACTTTCGCCTTCCTACGTCCACGTACGCGACGATGGCACTGCGCGAGCTTC 1238
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      TCAAAACCGATACCTCCTCCAGTAACCAACGAACGCTGGAAAAGTTGGGCCAGGCTGTTG 1298
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      TCGCCCGAGCAGAGGACGAGACGACGGAGGAGAAAAAAGCGGATGAAGAAAATGAATCGT 1358
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      GCCGGCTACGGACGATGAGCCTCAATCGAAAGTGGTGAAGCTGGCTGAATAGTTATTTAC 1418
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ------------------------------------------------------------
consensus_7251#3      ------------------------------------------------------------
consensus_7251#0      CTTTTATCTTAATGGAACTGAATTGTGTGAAGTTTTTTTCTATAAAGAGAACTATTTTCA 1478
consensus_7251#2      ------------------------------------------------------------
consensus_7251#4      ------------------------------------------------------------
                                                                                  

consensus_7251#1      ----------
consensus_7251#3      ----------
consensus_7251#0      TTTAGGGTGG 1488
consensus_7251#2      ----------
consensus_7251#4      ----------
                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)