These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1552 fasta sequence [GGCCGTGGAGGAGACGTGCTTTTCCTGTGTTGAAGATGCCGCTCGCGGACACTGTCTGCTTTTGCTGGGCCTGCGAGATTGCTTTGTTTTCCGCACTAAAGTGGTCACTGTGTACTTTCCGACTGTGAGCTGCAATGTTGTTTGCCTCTGCCTGCTGAAAGTCTCCCATTTTTAACGACCGGGCTTCCTTCAGTATTGCACCCTTCTCCTCCGCGGTTACACCGTCCACCTCCATCCGGCTGCTCGTGGCGGCGAGGGCGGCCTGCTCCTGGTACTGCAGGTCGCCCGCCTGCAGCTTCTTCGATTCGGCCGAGTTGATAGTGGCCTGCTCGCTGCTGAACCCGTCCGTCGTTA-CCTTCGTCTTCGACTCGGACGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGGCGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGAGGATGCCGCCGCTGCCCCCACCATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGGAAAGGTGATCGTCATCGGTTTCGGAGTCGGGAAACGTTACCAGCGGGTCGGCCCCCTGAGGATCGTCGAGGCTGTCCATCGAGGAGCGGAGCCTTGACTTGATATCGTTGATTTTGGACGACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAGGTCGACGTCGTGGTCGATAGATTCTGGGACGTGCTGCTGCTGCTGC------TACTATGACCCATCATGTTCTTCATCTCGGCGATGGAGTTTTGCATCTCGCCCAGGCCCTGCTTGACGGCGGCCG-CGACGTTGTGCTGCTGGAGGAGGAGGACGACGTTAGGGACGACATACGCTGCGTGGAGGAGGAACTCTTCTCCACATGCTTCGTCGTGGTGCTGGAGGTGGACGACGACAACTTGGAGCTTTTGCTGCTGCTACTGCTCCTGCTGTTGAGTAACTGTAAATGGACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTG-TTGATTAATAG-TTTGCGTCCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTTTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCGTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCGTCTGCGACAAGTTCGTGCTGATCGTTCGTTCGTTCTGGGGGTACTCCAATAGGCCAACAGTTCTCGAG] [+] EMBL CNS08ORF [GGCCGTGGAGGAGACGTGCTTTTCCTGTGTTGAAGATGCCGCTCGCGGACACTGTCTGCTTTTGCTGGGCCTGCGAGATTGCTTTGTTTTCCGCACTAAAGTGGTCACTGTGTACTTTCCGACTGTGAGCTGCAATGTTGTTTGCCTCTGCCTGCTGAAAGTCTCCCATTTTTAACGACCGGGCTTCCTTCAGTATTGCACCCTTCTCCTCCGCGGTTACACCGTCCACCTCCATCCGGCTGCTCGTGGCGGCGAGGGCGGCCTGCTCCTGGTACTGCAGGTCGCCCGCCTGCAGCTTCTTCGATTCGGCCGAGTTGATAGTGGCCTGCTCGCTGCTGAACCCGTCCGTCGTTA CCTTCGTCTTCGACTCGGACGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGGCGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGAGGATGCCGCCGCTGCCCCCACCATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGGAAAGGTGATCGTCATCGGTTTCGGAGTCGGGAAACGTTACCAGCGGGTCGGCCCCCTGAGGATCGTCGAGGCTGTCCATCGAGGAGCGGA CCTTGACTTGATATCGTTGATTTTGGACGACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAGGTCGACGTCGTGGTCGATAGATTCTGGGACGTGCTGCTGCTGCTGC TACTATGACCCATCATGTTCTTCATCTCGGCGATGGAGTTTTGCATCTCGCCCAGGCCCTGCTTGACGGCGGCCG CGACGTTGTGCTGCTGGAGGAGGAGGACGACGTTAGGGACGACATACGCTGCGTGGAGGAGGAACTCTTCTCCACATGCTTCGTCGTGGTGCTGGAGGTGGACGACGACAACTTGGAGCTTTTGCTGCTGCTACTGCTCCTGCTGTTGAGTAACTGTAAATGGACGGACGCTCACGGGTTCACA ] [-] EMBL CNS08ORE [ CTGCAGCTTCTTCGATTCGGCCGAGTTGATAGTGGCCTGCTCGCTGCTGAACCCGTCCGTCGTTACCCTTC TCTTCGACTCGGACGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGGCGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGAGGATGCCGCCGCTGCCCCCACCATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGGAAAGGTGATCGTCATCGGTTTCGGAGTC GGAAACGTTACCAGCGGGTCGGCCCCCTGAGGATCGTCGAGGCTGTCCATCGAGGAGCGGAGCCTTGACTTGATATCGTTGATTTTGGACGACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAGGTCGACGTCGTGGTCGATAGATTCTGGGACGTGCTGCTGCTGCTGC TACTATGACCCATCATGTTCTTCATCTCGGCGATGGAGTTTTGCATCTCGCCCAGGCCCTGCTTGACGGCGGCCGCCGACGTTGTGCTGCTGGAGGAGGAGGACGACGTTAGGGACGACATACGCTGCGTGGAGGAGGAACTCTTCTCCACATGCTTCGTCGTGGTGCTGGAGGTGGACGACGACAGCTTGGAGCTTTTGCTGCTGCTACTGCTCCTGCTGTTGAGTAACTGTAAATGGACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTG TTGATTAATAG TTTGCGTC ] [-] EMBL AGA281060 [ CGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGGCGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGAGGATGCCGCCGCTACCCCCACTATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGGAAAGGTGATCGTCATCGGTTTCGGAGTCGGGAAACGTTACCAGCGGATCGGCTCCCTGAGGATCGTCGAGGCTGTCCATCGAGGAGCGGAGCCTTGACTTGATATCGTTGATTTTGGACGACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAAGTCGACGTCGTGGTCGATAGATTCTGGGATGTGCTGCTGCTGCTGCTGCTGGTGCTATGACCCATCATGTTCTTCATCTCGGCGATGGAGTTTTGCATCTCGCCCAGGCCC ] [+] EMBL CNS08INE [ ACGCTCACGGGTTCACAGCAGGGAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACAAAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTTATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTTTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCGTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCGTCTGCGACAAGTTCGTGCTGATCGTTCGTTCGTTCTGGGGGTACTCCAATAGGCCAACAGTTCTCGAG] consensusID : consensus_7252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 577 fasta sequence [CCCGGGAAAAGGGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTGTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCGTTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCTCTGCGACAAGTTCGTGCTGATCGTTCGTTCGTT] [-] EMBL CNS08VGV [CCCGGGAAAAGGGGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTGTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCGTTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCTCTGCGACAAGTTCGTGCTGATCGTTCGTTCGTT] [-] EMBL CNS08IND [CCCGGGCACATGTGGCC TTTTTTTTTTTTTTTTTTTTTTTTTTACGGACGCTCACGGGTTCACAGCAGGCAGCGGGGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAAGCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTGGAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTGTTCGCTGCAAACAGCACCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTATCG TTTTTTTTTGTTCTTCGGTCTGTTACTTTT ] [+] EMBL CNS08VGW [ CTGTTCTGTCGCACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGCGAGGGAAGTTATGGTTTCGATCGTTTTAGTTTCCGGGTTTAATTAAAAGTTTTGCGTTCGAAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTTTTGGAGTTTGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7252#0 GGCCGTGGAGGAGACGTGCTTTTCCTGTGTTGAAGATGCCGCTCGCGGACACTGTCTGCT 60 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 TTTGCTGGGCCTGCGAGATTGCTTTGTTTTCCGCACTAAAGTGGTCACTGTGTACTTTCC 120 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 GACTGTGAGCTGCAATGTTGTTTGCCTCTGCCTGCTGAAAGTCTCCCATTTTTAACGACC 180 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 GGGCTTCCTTCAGTATTGCACCCTTCTCCTCCGCGGTTACACCGTCCACCTCCATCCGGC 240 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 TGCTCGTGGCGGCGAGGGCGGCCTGCTCCTGGTACTGCAGGTCGCCCGCCTGCAGCTTCT 300 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 TCGATTCGGCCGAGTTGATAGTGGCCTGCTCGCTGCTGAACCCGTCCGTCGTTACCTTCG 360 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 TCTTCGACTCGGACGTCATTTTCTTCTGCTCGAACTTGACCGTATCGACGGTCGTGCCGG 420 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 CGGCGGCGCACCCGTTCATCAGTGCCTGATGGTGGTGGTGATTGGTACCGTTCGGGACGA 480 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 GGATGCCGCCGCTGCCCCCACCATTCGCACCGAGCGGCTTCAGTGACGAGGCCATGCCGG 540 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 AAAGGTGATCGTCATCGGTTTCGGAGTCGGGAAACGTTACCAGCGGGTCGGCCCCCTGAG 600 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 GATCGTCGAGGCTGTCCATCGAGGAGCGGAGCCTTGACTTGATATCGTTGATTTTGGACG 660 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 ACATCTTGCGATGGTTCGAAAGGGCGGAAGATTTAATGGACGAGGTCGACGTCGTGGTCG 720 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 ATAGATTCTGGGACGTGCTGCTGCTGCTGCTACTATGACCCATCATGTTCTTCATCTCGG 780 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 CGATGGAGTTTTGCATCTCGCCCAGGCCCTGCTTGACGGCGGCCGCGACGTTGTGCTGCT 840 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 GGAGGAGGAGGACGACGTTAGGGACGACATACGCTGCGTGGAGGAGGAACTCTTCTCCAC 900 consensus_7252#1 ------------------------------------------------------------ consensus_7252#0 ATGCTTCGTCGTGGTGCTGGAGGTGGACGACGACAACTTGGAGCTTTTGCTGCTGCTACT 960 consensus_7252#1 ----------------------------CCCGGGAAAAGGGGGCCTTTTTTTTTTTTTTT 32 ** ** ** ** *** * * * * consensus_7252#0 GCTCCTGCTGTTGAGTAACTGTAAATGGACGGACGCTCACGGGTTCACAGCAGGCAGCGG 1020 consensus_7252#1 TTTTTTTTTTTTTA---------------CGGACGCTCACGGGTTCACAGCAGGCAGCGG 77 * * * ** * ******************************* consensus_7252#0 GGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAA 1080 consensus_7252#1 GGATTACACTGTGCCGAGGAAGGCACTTATTTACTCTCTGCCCCGGTGTACAACACACAA 137 ************************************************************ consensus_7252#0 GCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCG 1140 consensus_7252#1 GCCCACTAACAGCAGCACCTTCACCTACAAGAAGCTTCACGTTCTGTGGCTGTTCTGTCG 197 ************************************************************ consensus_7252#0 CACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGC 1200 consensus_7252#1 CACTCGGTTCGCTCACTTCACTCGTTCCAAAACTTGCACCAAATGGATCTCGTTTCTCGC 257 ************************************************************ consensus_7252#0 GAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTT-GATTAATAGTTT-GCGTCCG 1258 consensus_7252#1 GAGGCAAGTGATGGTTTCGATCGTTTTAGTTTCCGTGTTTGATTAATAGTTTTGCGTTCG 317 *************************************** ************ **** ** consensus_7252#0 AAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTG 1318 consensus_7252#1 AAATTGTCACTTTTCGTAGTGGTTTTTATATTTTTGTTTATTTGCGTTATGAGGGTGTTG 377 ************************************************************ consensus_7252#0 GAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTTTTCGCTGCAAACAGCA 1378 consensus_7252#1 GAGTTTGAAATTCTCCGACTCTTTCAACGCTTCTCGTTCGCTTGTTCGCTGCAAACAGCA 437 ******************************************* **************** consensus_7252#0 CCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTAT 1438 consensus_7252#1 CCGTAGAAAGATGCTGCGACTGCTGGTTATTGGTTTAGAAGTTCGAAATCCGGTTCGTAT 497 ************************************************************ consensus_7252#0 CGTTTTTTTTT-GTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTCGTCTGCGACAAGTT 1497 consensus_7252#1 CGTTTTTTTTTTGTTCTTCGGTCTGTTACTTTTCGCTCGATCGCTC-TCTGCGACAAGTT 556 *********** ********************************** ************* consensus_7252#0 CGTGCTGATCGTTCGTTCGTTCTGGGGGTACTCCAATAGGCCAACAGTTCTCGAG 1552 consensus_7252#1 CGTGCTGATCGTTCGTTCGTT---------------------------------- 577 ********************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||