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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1368 fasta sequence
[AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGGACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGCTGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGGTGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCGCCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGCTCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGAAGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGGCCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG-TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGATGGGGTGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT-GG-ACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGGGAGCATGTTTTTCTTTCGCTAAGCGAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA]
[+] EMBL BX620074 [AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGGACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGCTGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGGTGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCGCCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGCTCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGAAGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGGCCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCA ]
[+] EMBL AGA284068 [ TCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGA ]
[+] EMBL AGA281052 [ TCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGTTCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACGTTTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGG ]
[+] EMBL BX621020 [ CTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCACAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAACTGGTCGTGCGCGCGATCGTGCTGGGGGAAAACGACGCCGATGGGGTGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACTCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCNGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTATCAAGGAAGCGTGGCCAGAATGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT GG ACCAATGACAACACAATTGAAGGAAGCGATGGNCCAATAGGGGAGCATGTTTTTCT ]
[-] EMBL AGA282680 [ GTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAGCTACAGAACGCGTACCGCGGCTACACGCAGTCGAACAGCCAGTGGTCCAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGA ACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGag ]
[-] EMBL BM616290 [ AACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGACGGAAAGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT GGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGGGAGCATGTTTTTCTTTCGCTAAGCGAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA]
consensusID : consensus_7258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGCGAATGCAAACATACATTTCCCTTCAAATAAAG]
[-] EMBL AGA285364 [CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGCGAATGCAAACATACATTTCCCTTCAAATAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7258#0 AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGG 60
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 ACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGC 120
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGG 180
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCG 240
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 CCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGC 300
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGA 360
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 AGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGG 420
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 CCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGC 480
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACC 540
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 GGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGT 600
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 ACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCA 660
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 ACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG 720
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACA 780
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 AGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGATGGGG 840
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 TGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGC 900
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 AGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGA 960
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 AGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGT 1020
consensus_7258#1 ------------------------------------------------------------
consensus_7258#0 CTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCT 1080
consensus_7258#1 ------------------------CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCT 36
************************************
consensus_7258#0 CGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGC 1140
consensus_7258#1 CGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGC 96
************************************************************
consensus_7258#0 AGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGT 1200
consensus_7258#1 AGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGT 156
************************************************************
consensus_7258#0 GGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGTGGA-CAAATGACGACCC 1259
consensus_7258#1 GGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCC 216
************************* ***************** ** *************
consensus_7258#0 AATTGAAGGAAGCGATGGCCCAATAGG-GGAGCATG-------TTTTTCTTTCGCTAAGC 1311
consensus_7258#1 AATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGC 276
*************************** ** * *** ************ ****
consensus_7258#0 GAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA 1368
consensus_7258#1 GAATGCAAACATACAT------TTCCCTTCAAATAAAG------------------- 308
*** *** *** *** ****************
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||