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Anopheles gambiae
cluster # 7258 cluster # 7258       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7258#0 length = 1368 sequences # 6  
consensus_7258#1 length = 308 sequences # 1  

consensusID : consensus_7258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1368
fasta sequence
                              [AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGGACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGCTGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGGTGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCGCCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGCTCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGAAGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGGCCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG-TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGATGGGGTGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT-GG-ACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGGGAGCATGTTTTTCTTTCGCTAAGCGAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA]

[+] EMBL BX620074             [AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGGACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGCTGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGGTGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCGCCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGCTCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGAAGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGGCCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AGA284068            [                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AGA281052            [                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGTTCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACGTTTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX621020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCACAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAACTGGTCGTGCGCGCGATCGTGCTGGGGGAAAACGACGCCGATGGGGTGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACTCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCNGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTATCAAGGAAGCGTGGCCAGAATGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT GG ACCAATGACAACACAATTGAAGGAAGCGATGGNCCAATAGGGGAGCATGTTTTTCT                                                                   ]
[-] EMBL AGA282680            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAGCTACAGAACGCGTACCGCGGCTACACGCAGTCGAACAGCCAGTGGTCCAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGA ACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGag                                                                                ]
[-] EMBL BM616290             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGACGGAAAGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT GGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGGGAGCATGTTTTTCTTTCGCTAAGCGAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA]


>consensus_7258#0 AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGG ACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGC TGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGG TGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCG CCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGC TCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGA AGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGG CCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGC TGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACC GGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGT ACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCA ACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACA AGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGATGGGG TGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGC AGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGA AGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGT CTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCT CGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGC AGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGT GGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGTGGACAAATGACGACCCA ATTGAAGGAAGCGATGGCCCAATAGGGGAGCATGTTTTTCTTTCGCTAAGCGAACGCAGA CACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA



consensusID : consensus_7258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence
                              [CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGCGAATGCAAACATACATTTCCCTTCAAATAAAG]

[-] EMBL AGA285364            [CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGCGAATGCAAACATACATTTCCCTTCAAATAAAG]


>consensus_7258#1 CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAA GGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTG GGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGG CAGCGCTGGAACGTTTGGTAGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAAT AGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGCGAATGCAAACATACATTTCCCTTC AAATAAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7258#0      AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGG 60
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      ACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGC 120
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      TGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGG 180
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      TGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCG 240
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      CCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGC 300
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      TCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGA 360
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      AGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGG 420
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      CCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGC 480
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      TGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACC 540
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      GGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGT 600
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      ACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCA 660
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      ACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG 720
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACA 780
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      AGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGATGGGG 840
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      TGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGC 900
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      AGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGA 960
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      AGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGT 1020
consensus_7258#1      ------------------------------------------------------------
                                                                                  

consensus_7258#0      CTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCT 1080
consensus_7258#1      ------------------------CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCT 36
                                              ************************************

consensus_7258#0      CGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGC 1140
consensus_7258#1      CGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGC 96
                      ************************************************************

consensus_7258#0      AGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGT 1200
consensus_7258#1      AGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGT 156
                      ************************************************************

consensus_7258#0      GGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGTGGA-CAAATGACGACCC 1259
consensus_7258#1      GGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCC 216
                      ************************* ***************** ** *************

consensus_7258#0      AATTGAAGGAAGCGATGGCCCAATAGG-GGAGCATG-------TTTTTCTTTCGCTAAGC 1311
consensus_7258#1      AATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGC 276
                      *************************** ** * ***       ************ ****

consensus_7258#0      GAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA 1368
consensus_7258#1      GAATGCAAACATACAT------TTCCCTTCAAATAAAG------------------- 308
                      *** *** *** ***       ****************                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)