These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1368 fasta sequence [AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGGACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGCTGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGGTGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCGCCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGCTCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGAAGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGGCCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG-TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGATGGGGTGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT-GG-ACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGGGAGCATGTTTTTCTTTCGCTAAGCGAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA] [+] EMBL BX620074 [AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGGACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGCTGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGGTGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCGCCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGCTCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGAAGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGGCCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCA ] [+] EMBL AGA284068 [ TCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGA ] [+] EMBL AGA281052 [ TCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGTTCCTGCTGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACCGGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACGTTTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGG ] [+] EMBL BX621020 [ CTCGCCAAGGCGTACATCATGCTGGGGGAAAAGGCGCGCGCGCACAAGGTGCTGCAGGAGGCGCTCAAGTGCAACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACAAGGAGGTGCTGGAACTGGTCGTGCGCGCGATCGTGCTGGGGGAAAACGACGCCGATGGGGTGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACTCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCNGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTATCAAGGAAGCGTGGCCAGAATGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT GG ACCAATGACAACACAATTGAAGGAAGCGATGGNCCAATAGGGGAGCATGTTTTTCT ] [-] EMBL AGA282680 [ GTCATGCCTGTGCCCAGCAGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGAAGCGCTGCCAGAAGCTACAGAACGCGTACCGCGGCTACACGCAGTCGAACAGCCAGTGGTCCAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGA ACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGag ] [-] EMBL BM616290 [ AACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGTCTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGACGGAAAGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGT GGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGGGAGCATGTTTTTCTTTCGCTAAGCGAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA] consensusID : consensus_7258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGCGAATGCAAACATACATTTCCCTTCAAATAAAG] [-] EMBL AGA285364 [CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCTCGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGCAGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGTGGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCCAATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGCGAATGCAAACATACATTTCCCTTCAAATAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7258#0 AGGAGCTGGTGCAGCAGTGCNACACACCGTCCGGTGAAACGGCCGCCATCCCGATAGCGG 60 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 ACCGGCTGTCGATGGCGTTCAGCTCGTGGCCCATCGCCAGCTGGCAGATGAAGGAAAAGC 120 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 TGGCCGACGTGATGGTCAGCCTTGGCATGGTGAAGGGTGCGCTCGACATTTACCAGCAGG 180 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 TGCAGAGCTGGGAGAACGTGATCGACTGCTACACGGTGCTCGAGATGCGCCATCTCGCCG 240 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 CCACCGTCATCAATCAGCTGATCGAACGGAACGGCCCCTCGGTCCGGCTGTACTGCATGC 300 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 TCGGTGACGCTACGGACGACGTGGACTGCTACCGGCGTGCCTGGGAGCTGTCCAGCGAGA 360 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 AGAGTGCGAAAGCGCAACGGCACTGGGGCAACTATTACTTCGCGCGCAAGGACTATGCGG 420 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 CCGCGATCGAGCATCTGCGCCGTTCGATCGAGATAAACTGCCTGCAGGAACGGATCCTGC 480 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 TGCGGCTCGGGTACTCCGCCCTGCAGCTGGAGCGGTGGGAGGAGGCCGCTTACGCCTACC 540 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 GGCTGTACACCTCGCTCGAGAGCCACGGGTTCGAGCCGTGGAACAATCTCGCCAAGGCGT 600 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 ACATCATGCTGGGGGAAAAGGCGCGCGCGCATAAGGTGCTGCAGGAGGCGCTCAAGTGCA 660 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 ACTTCAGCAACTGGAAGGTGTGGGAAAACTATCTGCTCGTGTGTGTCGATACGCGCAACG 720 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 TTGGCGATGCGCTGAACGCGTACGAGCGGCTGCTCGAGCTGAAGGAGCGCCACTACGACA 780 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 AGGAGGTGCTGGAGCTGGTCGTGCGCGCGATCGTGCTGGGGGAAAAGGACGCCGATGGGG 840 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 TGTCGTGCGGCCGGCTGAAGCAGAAAGCGATCAAGCTGCTCGGTCATGCCTGTGCCCAGC 900 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 AGCCCAACAATGGGTATCTGTACGAGCTGGCGGCCGAGCTGGAGGATGCGGACCTGCTGA 960 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 AGCGCTGCCAGAAACTGCAGAACGCGTACCGCGGCTACACGCAGTCGAACAGTCAGTGGT 1020 consensus_7258#1 ------------------------------------------------------------ consensus_7258#0 CTAAAGCGCCGGAGAGCGCTCTGACGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCT 1080 consensus_7258#1 ------------------------CGGTGGTGAACCTAAGCGTTGAGCTTTGCGAACGCT 36 ************************************ consensus_7258#0 CGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGC 1140 consensus_7258#1 CGCTGAAGGCATTTGTGGATGGAAGGCAGGAGACGGACCGGTTAGTGCCGCTACGATCGC 96 ************************************************************ consensus_7258#0 AGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGT 1200 consensus_7258#1 AGCTCTCTTCGGCCCGGCTCAGTGGGCAGGCGTGCTTACGCTCCGCTAGCAAGGAAGCGT 156 ************************************************************ consensus_7258#0 GGCCAGAGTGTGCCGAACCGTTGGCGGCGCTGGAACGTTTGGTGGA-CAAATGACGACCC 1259 consensus_7258#1 GGCCAGAGTGTGCCGAACCGTTGGCAGCGCTGGAACGTTTGGTAGAACAAATGACGACCC 216 ************************* ***************** ** ************* consensus_7258#0 AATTGAAGGAAGCGATGGCCCAATAGG-GGAGCATG-------TTTTTCTTTCGCTAAGC 1311 consensus_7258#1 AATTGAAGGAAGCGATGGCCCAATAGGAGGGGGATGGGGGCAGTTTTTCTTTCGCCAAGC 276 *************************** ** * *** ************ **** consensus_7258#0 GAACGCAGACACACACACACACTTCCCTTCAAATAAAGCATTTATTATCTACTTTTA 1368 consensus_7258#1 GAATGCAAACATACAT------TTCCCTTCAAATAAAG------------------- 308 *** *** *** *** **************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||