These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1012 fasta sequence [CCGGCAAAAACGGTAACAAAACAAACAAAAAAAACCATGAAAAGAATGAACGAATCACTTGTGGACACAAAATTGTTTTTAAAACAACCCTTCTAATTTCTCCCAATCCGCCCGCCACACTCACCCACACTCAGGAGAGCGTAACAAAGCGCATTACAAAAAGGAGAAAAATAATGTTACCGAAAAAGGAAACATCACAACACATTCTAGCACCCATCAGATAGACAGTGATTGGTAGTTCGCCCTTCCAGGAAAAAAAAACAATAACAAAAGATCATACGAATGTCCCTAATTTGACCCCCCCCCCCACCCCCATGGGCATGGGAAAAACGAAACAAACGAAAAATGTAAACAAAAACCCTCTAACCACTGTGAGTAGTAGCGCGCGGGTGGCCATCCTTCCCCTCCACTCTCTGCCCACCCCCTCGGAAGGGGTGAAAAATGTTAATTTTAAATGTCAACCACAAACCGAAAGCGCGAACCACAAGATAGCAAAGAAAGGATCTAGAGAAAGTATGAGTCTGCGTGTTTGTTTGTGTGTGTGTGTGTGTGAGAGACAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGGAAAGTGACGAGTTTTAGTCCCACAAAAACAAAACAGGAAACTCCAAAACAACCTGTGGAAATGGTGTGGAAATAGAGAAGGCATGGGAAAGGGTAAAAAATACACAAATAGCTAGGCGTATGTGAGAGTGTGTGTATGCGTGGTTGTGTGTGCGTATGTATGTGTGTGTGATTGGATGAGGAGTGTGAGTGATGTGTGTGTGTGTGTGTGTGGGGGAGGGGGGGGCCAGCCGCCGCCATCATACCTTCACACACCACGACCCCCACCCATACCGTCACTTTCTTCGGCACACACACACATACACACACAGGCTCAAAAGCGCGATGCGAAACGAATCTATTTACATACACTTTTTTTTATTAAACTTAGTAAAAACAAACAACAACAAACAAACGAAACGAAACAAAA] [+] EMBL BM627839 [CCGGCAAAAACGGTAACAAAACAAACAAAAAAAACCATGAAAAGAATGAACGAATCACTTGTGGACACAAAATTGTTTTTAAAACAACCCTTCTAATTTCTCCCAATCCGCCCGCCACACTCACCCACACTCAGGAGAGCGTAACAAAGCGCATTACAAAAAGGAGAAAAATAATGTTACCGAAAAAGGAAACATCACAACACATTCTAGCACCCATCAGATAGACAGTGATTGGTAGTTCGCCCTTCCAGGAAAAAAAAACAATAACAAAAGATCATACGAATGTCCCTAATTTGACCCCCCCCCCCACCCCCATGGGCATGGGAAAAACGAAACAAACGAAAAATGTAAACAAAAACCCTCTAACCACTGTGAGTAGTAGCGCGCGGGTGGCCATCCTTCCCCTCCACTCTCTGCCCACCCCCTCGGAAGGGGTGAAAAATGTTAATTTTAAATGTCAACCACAAACCGAAAGCGCGAACCACAAGATAGCAAAGAAAGGATCTAGAGAAAGTATGAGTCTGCGTGTTTGTGTGTGTGTGTGTGTGTGAGTGTGACAGAGAG ] [+] EMBL AGA281786 [ CCCCTCTCTGCCCACCCCCTCGGAAGGGGTGAAAAATGTTAATTTTAAATGTCAACCGCAAACCGAAAGCGCGAACCACAAGATAGCAAAGAAAGGATCTAGAGAAAGTATGAGTCTGCGTGTTTGTTTGTGTGTGTGTGTGTGTGAGAGACAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGGAAAGTGACGAGTTTTAGTCCCACAAAAACAAAACAGGAAACTCCAAAACAACCTGTGGAAATGGTGTGGAAATAGAGAAGGCATGGGAAAGGGTAAAAAATACACAAATAGCTAGGCGTATGTGAGAGTGTGTGTATGCGTGGTTGTGTGTGCGTATGTATGTGTGTGTGATTGGATGAGGAGTGTGAGTGATGTGT ] [+] EMBL BX612828 [ AGAGAAAGTATGAGTCTGCGTGTTTGTTTGTGTGTGTGTGTGTGTGAGAGACAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGGAAAGTGACGAGTTTTAGTCCCACAAAAACAAAACAGGAAACTCCAAAACAACCTGTGGAAATGGTGTGGAAATAGAGAAGGCATGGGAAAGGGTAAAAAATACACAAATAGCTAGGCGTATGTGtgt ] [-] EMBL AGA280089 [ AAAACAAAACAGGAAACTCCAAAACAACCTGTGGAAATGGTGTGGAAATAGAGAAGGCATGGGAAAGGGTAAAAAATACACAAATAGCTAGGCGTATGTGAGAGTGTGTGTATGCGTGGTTGTGTGTGCGTATGTATGTGTGTGTGATTGGATGAGGAGTGTGAGTGATGTGTGTGTGTGTGTGTGTGGGGGAGGGGGGGGCCAGCCGCCGCCATCATACCTTCACACACCACGACCCCCACCCATACCGTCACTTTCTTCGGCACACACACACATACACACACAGGCTCAAAAGCGCGATGCGAAACGAATCTATTTACATACACTTTTTTTTATTAAACTTAGTAAAAACAAACAACAACAAACAAACGAAACGAAACAAAA] consensusID : consensus_7265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence [TTTTTTTTTGGATGGCATGACAAACAGCAACAACAGAGCGGGGGTGTAGTTAAAGGCAGGTTTTTCTAACCCCCAAACTGTAGAGCCACAACAGAACGATCTCTGTTGATGAAGAAAAATGATGTTGACGGTCCCGGTTCGCTTTTTCCACCTATACTTTGTACTAGGCATAGGTACTACAATTTGCCACTTCTTCTTTACATTATTTGCTTGTGTTTGCAAGAACCCAAAAGTGACAGTAATTTTTTTTTACTTGTCAGCTCTTACCACCTTCAATTCTCGGTGGTAGTTGACTCCACACTTTATCAAACACTACACATGCTTATGATGGTGTGCTGGTGATCCGGGTTGGGGCGTCTTTTCTCCTCCAACAACTGTGGCGGCAATGGTGAAGAAAAAGAGTTGATATTGTGTTTTGCAAACGACAACACACGGCAGCCAGCATCCGAAAAAGCAAAATAAAAACCCTCACGCAGGTGTGTCTCTGTTTGTCGCGCGGCGAAAATGAAGGGGGGGGGCCAGCCGCCGCCATCATACCTTCACACACCACGACCCCCACCCATACCGTCACTTTCTTCGGCACACACACACATACACACACAGGCTCAAAAGCGCGATGCGAAACGAATCTATTTACATACACTTTTTTTTATTAAACTT] [+] EMBL AGA281259 [TTTTTTTTTGGATGGCATGACAAACAGCAACAACAGAGCGGGGGTGTAGTTAAAGGCAGGTTTTTCTAACCCCCAAACTGTAGAGCCACAACAGAACGATCTCTGTTGATGAAGAAAAATGATGTTGACGGTCCCGGTTCGCTTTTTCCACCTATACTTTGTACTAGGCATAGGTACTACAATTTGCCACTTCTTCTTTACATTATTTGCTTGTGTTTGCAAGAACCCAAAAGTGACAGTAATTTTTTTTTACTTGTCAGCTCTTACCACCTTCAATTCTCGGTGGTAGTTGACTCCACACTTTATCAAACACTACACATGCTTATGATGGTGTGCTGGTGATCCGGGTTGGGGCGTCTTTTC ] [-] EMBL AGA282880 [ GCTTATGATGGTGTGCTGGTGAT CGGGTT GGGCGTCTTTTCTCCTCCAACAACTGTGGCGGCAATGGTGAAGAAAAAGAGTTGATATTGTGTTTTGCAAACGACAACACACGGCAGCCAGCATCCGAAAAAGCAAAATAAAAACCCTCACGCAGGTGTGTCTCTGTTTGTCGCGCGGCGAAAATGAAGGGGGGGGGCCAGCCGCCGCCATCATACCTTCACACACCACGACCCCCACCCATACCGTCACTTTCTTCGGCACACACACACATACACACACAGGCTCAAAAGCGCGATGCGAAACGAATCTATTTACATACACTTTTTTTTATTAAACTT] consensusID : consensus_7265#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [CCGGTTTGTGTGTGTGTGTGTGTGTGAGTGTGAGAGAGAGAGAGAGAGAAAGAAAGGGAAAGTGACGAGTTTTAGTCCCACAAAAACAAAACAGGAAACTCCAGAACAACCTGTGGAAATGGTGTGGAAATAGAGAAGGCATGGGAAAGGGTAAAAAATACACAAATAGCTAGGCGTATGTGAGGGTGTGTGTATGCGTGGTTGT] [+] EMBL BM643844 [CCGGTTTGTGTGTGTGTGTGTGTGTGAGTGTGAGAGAGAGAGAGAGAGAAAGAAAGGGAAAGTGACGAGTTTTAGTCCCACAAAAACAAAACAGGAAACTCCAGAACAACCTGTGGAAATGGTGTGGAAATAGAGAAGGCATGGGAAAGGGTAAAAAATACACAAATAGCTAGGCGTATGTGAGGGTGTGTGTATGCGTGGTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7265#0 CCGGCAAAAACGGTAACAAAACAAACAAAAAAAACCATGAAAAGAATGAACGAATCACTT 60 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 ------------------------------------------------------------ consensus_7265#0 GTGGACACAAAATTGTTTTTAAAACAACCCTTCTAATTTCTCCCAATCCGCCCGCCACAC 120 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 ------------------------------------------------------------ consensus_7265#0 TCACCCACACTCAGGAGAGCGTAACAAAGCGCATTACAAAAAGGAGAAAAATAATGTTAC 180 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 ------------------------------------------------------------ consensus_7265#0 CGAAAAAGGAAACATCACAACACATTCTAGCACCCATCAGATAGACAGTGATTGGTAGTT 240 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 ---------------------------------------------------------TTT 3 consensus_7265#0 CGCCCTTCCAGGAAAAAAAAACAATAACAAAAGATCATACGAATGTCCCTAATTTGACCC 300 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 TTTTTTGGATGGCATGACAAACAGCAACAACAGAGCGG--GGGTGTAGTTAAAGGCAGGT 61 consensus_7265#0 CCCCCCCCACCCCCATGGGCATGGGAAAAACGAAACAAACGAAAAATGTAAACAAAAACC 360 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 TTTTCTAACCCCCAAACTGTAGAGCCACAACAGAACGATCTCTGTTGATGAAGAAAAATG 121 consensus_7265#0 CTCTAACCACTGTGAGTAGTAGCGCGCGGGTGGCCATCCTTCCCCTCCACTCTCTGCCCA 420 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 ATGTTGACGGTCCCGGTTCGCTTTTTC---CACCTATACTTTGTACTAGGCATAGGTACT 178 consensus_7265#0 CCCCCTCGGAAGGGGTGAAAAATGTTAATTTTAAATGTCAACCACAAACCGAAAGCGCGA 480 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 ACAATTTGCCACTTCTTCTTTACATTATTTGCTTGTGTTTGCAAGAACCCAAAAGTGACA 238 consensus_7265#0 ACCACAAGATAGCAAAGAAAGGATCTAGAGAAAGTATGAGTCTGCGTGTTTGTTTGTGTG 540 consensus_7265#2 ------------------------------------------------CCGGTTTGTGTG 12 consensus_7265#1 GTAATTTTTTTTTACTTGTCAGCTCTT-ACCACCTTCAATTCTCGGTGGTAGTTGACTCC 297 *** consensus_7265#0 TGTGTGTGTGTGAGAGACAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAA 600 consensus_7265#2 TGTGTGTGTGT------------------GTGAGTGTGAGAGAGAGAGAGAGAGAAAGAA 54 consensus_7265#1 ACACTTTATCAAACA--------------CTACACATGCTTATGATGGTGTGCTGGTGAT 343 * * * * ** * * * ** consensus_7265#0 AGGGAAAGTGACGAGTTTTAGTCCCACAAAAACAAAACAGGAAACTCCAAAACAACCTGT 660 consensus_7265#2 AGGGAAAGTGACGAGTTTTAGTCCCACAAAAACAAAACAGGAAACTCCAGAACAACCTGT 114 consensus_7265#1 CCGGGTTGGGGCGTCTTTTCTCCTCCAACAACTGTGGCGGCAATGGTGAAGAAAAAGAGT 403 ** * * ** **** * * * ** * * ** * * ** ** consensus_7265#0 GGAAATGGTGTG--GAAATAGAGAAGGCATGGGAAAGGGTAAAAAATACACAAATAGCTA 718 consensus_7265#2 GGAAATGGTGTG--GAAATAGAGAAGGCATGGGAAAGGGTAAAAAATACACAAATAGCTA 172 consensus_7265#1 TGATATTGTGTTTTGCAAACGACAACACACGGCAGCCAGCATCCGAAAAAGCAAAATAAA 463 ** ** **** * ** ** ** ** ** * * * * * * ** * * consensus_7265#0 GGCGTATGTGAGAGTGTGTGTATGCGTGGTTGTGTGTGCGTATGTATGTGTGTGTGATTG 778 consensus_7265#2 GGCGTATGTGAGGGTGTGTGTATGCGTGGTTGT--------------------------- 205 consensus_7265#1 AACCCTCACGCAGGTGTGTCTCTGTTTG-TCGCGCG------------------------ 498 * * ****** * ** ** * * consensus_7265#0 GATGAGGAGTGTGAGTGATGTGTGTGTGTGTGTGTGTGGGGGAGGGGGGGGCCAGCCGCC 838 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 -------------------------------GCGAAAATGAAGGGGGGGGGCCAGCCGCC 527 consensus_7265#0 GCCATCATACCTTCACACACCACGACCCCCACCCATACCGTCACTTTCTTCGGCACACAC 898 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 GCCATCATACCTTCACACACCACGACCCCCACCCATACCGTCACTTTCTTCGGCACACAC 587 consensus_7265#0 ACACATACACACACAGGCTCAAAAGCGCGATGCGAAACGAATCTATTTACATACACTTTT 958 consensus_7265#2 ------------------------------------------------------------ consensus_7265#1 ACACATACACACACAGGCTCAAAAGCGCGATGCGAAACGAATCTATTTACATACACTTTT 647 consensus_7265#0 TTTTATTAAACTTAGTAAAAACAAACAACAACAAACAAACGAAACGAAACAAAA 1012 consensus_7265#2 ------------------------------------------------------ consensus_7265#1 TTTTATTAAACTT----------------------------------------- 660 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||