These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1193 fasta sequence [CAGATCGTGCAACTGTATGCAGATTGCACTGCTCTATCAACCGGTTGATCAGATTGTTACTGTCCCCCTCGACACTGGCCTCTTCCGACGCTGCGCCACCCTCCGACGATGGTGCCGCACCTTGGAAGAAGTTGCAGAAATCCTGCGGAAAGCCGTACACATTCCGCTTGATCGGCTGTACGCCACAGTCGTTGGGCAGATAGCGGAATTCGGGATCATCCTCCTCTTCGATCGTCGCCACCTGCGCTTCATCGTCCAGCTGGTACAGTAATCGAACGCCAAGCTGTCGGAATGGCCCTTGCCGTACAGTGAAAAGTCCATAATGATGACATTATCCTTCGCTGCCCCCTACACGTCGAATACATAATCCTTCAACGGGAAGGTCTCCTTTATCTTCTCCTTGAACAGCGACACAATATCGTTCACGATGTCGCTCCGTTCGCGTGCAATGTGCTCGTGATACGATGGCCAGTGCCGGGGGGAGATCGCCACGAGCGACCGATTGCGCACGAAGCAACGGAACTCCGACCCGGGATGGATGTCCCGCCACTTCTTCAGCACAACGTGATACCCGCTCCCATTCACCTCGGACCGTTCGCGGAAGTCTTCCTTACAGAAGCTGGACGCTTTCAGCAGCTGATACACGTCCGTAATGTCGCGCACACAGAGCGACTGGCCGAGCGTGATCCACTGCGCATCCTTCGGGCAGTGCCAGTCGCTTTTCAGAAATGCATTCCCTCCCAGACTCTGTATCGCATCGGTCAGCAATTGGGAGAATTCCGGAAATGCAGGCTGCTCCTGGTCGTCATCCGCACCATCCTCGCCCTCACTGTCCGTCCCATCGAACTGGTCGTCGAACGCGTTGTAGTGTGTGGTTTGAAATCCTTCCCCCGTGCTCACGTCCGTAAAGTTGGAGCACTCCTTCGGCAGAATTAGCATATCCTGGCGCAGATACGCCAGCACATCGTCCGGCACCGGAATGATGCACGATTTGATCGTATTTTTCCGAAACAGCTCGTACCAGTTCACATGCATGCAGGCCTGCTTTTCCAG-CTCGATGTTGCGGATCAACATTGTTTTAATTTTTGTTTCAATAAATTTTAAATTCACTCACACGCACACACACCGCAGCGTAATTTTCCAAAGTGATGAAATGCCGGCTGGAACTTGCAGCGACCAGAAAAAAGCAACGA] [+] EMBL CNS08K4J [CAGATCGTGCAACTGTATGCAGATTGCACTGCTCTATCAACCGGTTGATCAGATTGTTACTGTCCCCCTCGACACTGGCCTCTTCCGACGCTGCGCCACCCTCCGACGATGGTGCCGCACCTTGGAAGAAGTTGCAGAAATCCTGCGGAAAGCCGTACACATTCCGCTTGATCGGCTGTACGCCACAGTCGTTGGGCAGATAGCGGAATTCGGGATCATCCTCCTCTTCGATCGTCGCCACCTGCGCTTCATCGTCCAGCTGGTACAGTAATCGAACGCCAAGCTGTCGGAATGGCCCTTGCCGTACAGTGAAAAGTCCATAATGATGACATTATCCTTCGCTGCCCCCTACACGTCGAATACATAATCCTTCAACGGGAAGGTCTCCTTTATCTTCTCCTTGAACAGCGACACAATATCGTTCACGATGTCGCTCCGTTCGCGTGCAATGTGCTCGTGATACGATGGCCAGTGCCGGGGGGAGATCGCCACGAGCGACCGATTGCGCACGAAGCAACGGAACTCCGACCCGGGATGGATGTCCCGCCACTTCTTCAGCACAACGTGATACCCGCTCCCATTCACCTCGGACCGTTCGCGGAAGTCTTCCTTAAAGAAGCTGGACGCTTTCAGCAGCTGATACACGTCCGTAATGTCGCGCACACAGAGCGACTGGCCGAGCGTGATCCACTGCGCATCCTTCGGGCAGTGCCAGTCGCTTTTCAGAAATGCATTCCCTCCCAGACTCTGTATCGCATCGGTCAGCAATTGGGAGAATTCCGGAAATGCAGGCTGCTCCTGGTCGTCATCCGCA ] [-] EMBL BX606985 [ CTCCTTTATCTTCTCCTTGAACAGCGACACAATATCGTTCACGATGTCGCTCCGTTCGCGTGCAATGTGCTCGTGGTACGATGGCCAGTGCCGAGGGGAGATCGCCACGAGCGACCGATTGCGCACGAAGCAACGGAACTCCGACCCGGGATGGATGTCCCGCCACTTCTTCAGCACAACGTGATACCCGCTCCCATTCACCTCGGACCGTTCGCGGAAGTCTTCCTTACAGAAGCTGGACGCTTTCAGCAGCTGATACACGTCCGTAATGTCGCGCACACAGAGCGACTGGCCGAGCGTGATCCACTGCGCATCCTTCGGGCAGTGCCAGTCGCTTTTCAGAAACGCATTCCCTCCCAGACTCTGTATCGCATCGGTCAGCGATTGGGAGAATTCCGGAAATGCAGGCTGCTCCTGTTCGTCATCCGCACCATCCTCGCCCTCACTATCCGTTCCATCGAACTGGTCGTCGAACGCGTTGTAGTGTGTGGTTTGAAATCCTTCCCCCGTGCTCACGTCCGTAAAGTTGGAGCACTCCTTCGGCAGAATTAGCATATCCTGGCGCAGATACGCCAGCACATCTTCCGGCACCGGAATAATGCACGATTTGATCGTATTTTTTCGAAACAGCTCGTACCAGTTCACATGCATGCAGGCCTGCTTTTCCAG CTCGATGTTGCGGATCAACATTGTTTTAATTTTTGTTTCAATAAATTTTAAATTCACTCACACGCACACACACCG ] [-] EMBL BM634260 [ GAGATCGCCACGAGCGACCGATTGCGCACGAAGCAACGGAACTCCGACCCAGGATGGATGTCCCGCCACTTCTTCAGCACAACGTGATACCCGCTCCCATTCACCTCGGACCGTTCGCGGAAGTCTTCCTTGCAGAAGCTGGACGCTTTCAGCAGCTGATACACGTCCGTAATGTCGCGCACACAGAGCGACTGGCCGAGCGTGATCCACTGCGCATCCTTCGGGCAGTGCCAGTCGCTTTTCAGAAATGCATTCCCTCCGAGACTCTGTATCGCATCGGTCAGCAATTGGGAGAATTCGGGAAATGCGGGCTGCTCCTGGTCGTCATCCGCACCTTCCTCGCCCTCACTGTCCGTCCCATCGAACTGGTCGTCGAACGCGTTGTAGTGTGTGGTTTGAAATCCTTCCCCCGTGCTCACGTCCGTAAAGTTGGAGCACTCCTTCGGCAGAATTAGCATATCCTGGCGCAGATACGCCAGCACATCGTCCGGCACCGGAATGATGCACGATTTGATCGTATTTTTCCGAAACAGCTCGTACCAGTTCACATGCATGCAGGCCTGCTTTTCCAG CTCGATGTTGCGGATCAACATTGTTTTAATTTTTGTTTCAATAAATTTTAAATGCACACAAGCACACACACACCGCAGCGTAATTTTCCAAAGTGATGAAATGCCGG ] [-] EMBL BM629473 [ AAGCTGGACGCTTTCAGCAGCTGATACACGTCCGTAATGTCGCGCACACAGAGCGACTGGCCGAGCGTGATCCACTGCGCATCCTTCGGGCAGTGCCAGTCGCTTTTCAGAAATGCATTCCCTCCGAGACTCTGTATCGCATCGGTCAGCAATTGGGAGAATTCGGGAAATGCGGGCTGCTCCTGGTCGTCATCCGCACCTTCCTCGCCCTCACTGTCCGTCCCATCGAACTGGTCGTCGAACGCGTTGTAGTGTGTGGTTTGAAATCCTTCCCCCGTGCTCACGTCCGTAAAGTTGGAGCACTCCTTCGGCAGAATTAGCATATCCTGGCGCAGATACGCCAGCACATCGTCCGGCACCGGAATGATGCACGATTTGATCGTATTTTTCCGAAACAGCTCGTACCAGTTCACATGCATGCAGGCCTGCTTTTCCAG CTCGATGTTGCGGATCAACATTGTTTTAATTTTTGTTTCAATAAATTTTAAATGCACACAAGCACACACACACCGCAGCGTAATTTTCCAAAGTGATGAAATGCGTACTGGAACTTGCAGCGACCAGAAAAAAGCAACGA] [-] EMBL AL933453 [ ACAGAGCGACTGGCCGAGCGTGATCCACTGCGCATCCTTCGGGCAGTGCCAGTCGCTTTTCAGAAATGCATTCCCTCCCAGACTCTGTATCGCATCGGTCAGCAATTGGGAGAATTCCGGAAATGCAGGCTGCTCCTGGTCGTCATCCGCACCATCCTCGCCCTCACTGTCCGTCCCATCGAACTGGTCGTCAAACGCGTTGTAGTGTGTGGTTTGAAATCCTTCCCCCGTGCTCACGTCCGTAAAGTTGGAGCACTCCTTCGGCAGAATTAGCATATCCTGGCGCAGATACGCCAGCACATCGTCCGGCACCGGAATGATGCACGATTTGATCGTATTTTTCCGAAACAGCTCGTACCAGTTCACGTGCATGCAGGCCTGCTTTTCCAG CTCGATGTTGCGGATCAACATTGTTTTAATTTTTGTTTCAATAAATTTTAAATTCACTCACACGCACACACACCGCAGCGTAATTTTNCAcctcg ] [-] EMBL CNS08K4I [ ACGATTTGATCGTATTTTTTCGAAACAGCTCGTACCAGTTCACATGCATGCAGGCCTGCTTTTCCAGTCTCGATGTTGCGGATCAACATTGTTTTAATTTTTGTTTCAA ] consensusID : consensus_7266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [GGTGCCGCACCTTGGAAGAAGTTGCAGAAATCCTGCGGAAAGCCGTACACATTCCGCTTGATCGGCTGTACGCCACAGTCGTTCGGCAGATAGCGGAACTCGGGATCATCCTCCTCTTCGATCGTCGCCACCTGCGCTTCATCGTCCAGCTGGTCGTAATCGAACGCCAAGCTGTCGGAATGGCCCTTGCCGTACAGTGAAAAGTCCATAATGATGACATTATCCTTCGCTGGACGATACACGTCGAATACATAATCCTTCAACGGGAAGGTCTCCTCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM643167 [GGTGCCGCACCTTGGAAGAAGTTGCAGAAATCCTGCGGAAAGCCGTACACATTCCGCTTGATCGGCTGTACGCCACAGTCGTTCGGCAGATAGCGGAACTCGGGATCATCCTCCTCTTCGATCGTCGCCACCTGCGCTTCATCGTCCAGCTGGTCGTAATCGAACGCCAAGCTGTCGGAATGGCCCTTGCCGTACAGTGAAAAGTCCATAATGATGACATTATCCTTCGCTGGACGATACACGTCGAATACATAATCCTTCAACGGGAAGGTCTCCTCGGACGCGTGGGCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7266#0 CAGATCGTGCAACTGTATGCAGATTGCACTGCTCTATCAACCGGTTGATCAGATTGTTAC 60 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 TGTCCCCCTCGACACTGGCCTCTTCCGACGCTGCGCCACCCTCCGACGATGGTGCCGCAC 120 consensus_7266#1 --------------------------------------------------GGTGCCGCAC 10 ********** consensus_7266#0 CTTGGAAGAAGTTGCAGAAATCCTGCGGAAAGCCGTACACATTCCGCTTGATCGGCTGTA 180 consensus_7266#1 CTTGGAAGAAGTTGCAGAAATCCTGCGGAAAGCCGTACACATTCCGCTTGATCGGCTGTA 70 ************************************************************ consensus_7266#0 CGCCACAGTCGTTGGGCAGATAGCGGAATTCGGGATCATCCTCCTCTTCGATCGTCGCCA 240 consensus_7266#1 CGCCACAGTCGTTCGGCAGATAGCGGAACTCGGGATCATCCTCCTCTTCGATCGTCGCCA 130 ************* ************** ******************************* consensus_7266#0 CCTGCGCTTCATCGTCCAGCTGGTACAGTAATCGAACGCCAAGCTGTCGGAATGGCCCTT 300 consensus_7266#1 CCTGCGCTTCATCGTCCAGCTGGT--CGTAATCGAACGCCAAGCTGTCGGAATGGCCCTT 188 ************************ ********************************* consensus_7266#0 GCCGTACAGTGAAAAGTCCATAATGATGACATTATCCTTCGCTGCCCCCTACACGTCGAA 360 consensus_7266#1 GCCGTACAGTGAAAAGTCCATAATGATGACATTATCCTTCGCTGGACGATACACGTCGAA 248 ******************************************** * *********** consensus_7266#0 TACATAATCCTTCAACGGGAAGGTCTCCTTTATCTTCTCCTTGAACAGCGACACAATATC 420 consensus_7266#1 TACATAATCCTTCAACGGGAAGGTCTCCTCGGACGCGTGGGCGGACGCGTGGGCGG---- 304 ***************************** * * * ** * consensus_7266#0 GTTCACGATGTCGCTCCGTTCGCGTGCAATGTGCTCGTGATACGATGGCCAGTGCCGGGG 480 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 GGAGATCGCCACGAGCGACCGATTGCGCACGAAGCAACGGAACTCCGACCCGGGATGGAT 540 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 GTCCCGCCACTTCTTCAGCACAACGTGATACCCGCTCCCATTCACCTCGGACCGTTCGCG 600 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 GAAGTCTTCCTTACAGAAGCTGGACGCTTTCAGCAGCTGATACACGTCCGTAATGTCGCG 660 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 CACACAGAGCGACTGGCCGAGCGTGATCCACTGCGCATCCTTCGGGCAGTGCCAGTCGCT 720 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 TTTCAGAAATGCATTCCCTCCCAGACTCTGTATCGCATCGGTCAGCAATTGGGAGAATTC 780 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 CGGAAATGCAGGCTGCTCCTGGTCGTCATCCGCACCATCCTCGCCCTCACTGTCCGTCCC 840 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 ATCGAACTGGTCGTCGAACGCGTTGTAGTGTGTGGTTTGAAATCCTTCCCCCGTGCTCAC 900 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 GTCCGTAAAGTTGGAGCACTCCTTCGGCAGAATTAGCATATCCTGGCGCAGATACGCCAG 960 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 CACATCGTCCGGCACCGGAATGATGCACGATTTGATCGTATTTTTCCGAAACAGCTCGTA 1020 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 CCAGTTCACATGCATGCAGGCCTGCTTTTCCAGCTCGATGTTGCGGATCAACATTGTTTT 1080 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 AATTTTTGTTTCAATAAATTTTAAATTCACTCACACGCACACACACCGCAGCGTAATTTT 1140 consensus_7266#1 ------------------------------------------------------------ consensus_7266#0 CCAAAGTGATGAAATGCCGGCTGGAACTTGCAGCGACCAGAAAAAAGCAACGA 1193 consensus_7266#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||