|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence
[TACAACATAAAGGGTTTGCCTGCCCAGGTTCTCGTCNCGGGCCGAGCTTGTATGNGTGGGGTCCCAGTAACCGGTGCCCTGGCACCATGACAGGGCTACAAGGCGTACGGNNCTTGTCTGTGCGGGGCGTGTGCAATCGGTGGGCANACGGGGGTNCAAACCTGGCTTCGTAGCATAGGATACGGCCCGATNACGCCTCATTCGGTGCTAAATCTCGTACCCGTACGTCTAATATCGGTAAGCTACACACTACGCACACGCGGTACAACTCAAGCCGTGGTTGATCCAATAAGCTCGTTGTTACACCTTCGTGTGTACAACATTNCTCGCACTACTAGCATAACAGCCGCCGGACGTACACTGCTCGCCCGGGAGCCACCGATCGGTGGGTCCGACCGGGACGACAACATAGTACAAGCGGCGCACGCCGAAGGAAATCTTCTCGCGCTGGTCCCGCCAGCTGTACGCACCGTCCAGCCCGGCCCGTTTGGCGCATAGACCTGGTTCCTGGTCGGCACCGGGCTGCTCGGGTTCGTCTGCATCGTGTACGTGATGGCCACGTATCAGCCGAGGGGTACGACCAGGGCGACCGGGAGCTCGGCGGCTTCGTGCCGAACCGTAACCTGCCGCACGCGGAAGAGTNACGGCGAGC--GGTAACTCGGCCAGC-GCCTCC-TTTAATCCGAAGGTGTAACCGTCGGATTAGCAAAACGAAAGAAAAAAACGAAACATTCTCTGCTCCCAAATGTGATGTATGTGTGCAAGCGTGTGTATGGATGTGTTTGACTGTGTGTGTGTGTGTGTGTGTGGGTACGCTCCGGTGAGAAAGAGAACGATATATGTTGGTGCGTGTGTGTGTATGTATAGAGAGATGGGAACGACAGCATGTCGAGTGGGCGGGCAGGAAAGGTTGAGCTGTATCACTATATATTAATATTTTAATTGTTTTCAATTATAAAAATACATTATCTATTAATAATTTCAGCT]
[-] EMBL AL695798 [TACAACATAAAGGGTTTGCCTGCCCAGGTTCTCGTCNCGGGCCGAGCTTGTATGNGTGGGGTCCCAGTAACCGGTGCCCTGGCACCATGACAGGGCTACAAGGCGTACGGNNCTTGTCTGTGCGGGGCGTGTGCAATCGGTGGGCANACGGGGGTNCAAACCTGGCTTCGTAGCATAGGATACGGCCCGATNACGCCTCATTCGGTGCTAAATCTCGTACCCGTACGTCTAATATCGGTAAGCTACACACTACGCACACGCGGTACAACTCAAGCCGTGGTTGATCCAATAAGCTCGTTGTTACACCTTCGTGTGTACAACATTNCTCGCACTACTAGCATAACAGCCGCCGGACGTACACTGCTCGCCCGGGAGCCACCGATCGGTGGGTCCGACCGGGACGACAACATAGTACAAGCGGCGCACGCCGAAGGAAATCTTCTCGCGCTGGTCCCGCCAGCTGTACGCACCGTCCAGCCCGGCCCGTTTGGCGCATAGACCTGGTTCCTGGTCGGCACCGGGCTGCTCGGGTTCGTCTGCATCGTGTACGTGATGGCCACGTATCAGCCGAGGGGTACGACCAGGGCGACCGGGAGCTCGGCGGCTTCGTGCCGAACCGTAACCTGCCGCACGCGGAAGAGTNACGGCGAGC GGTAACTCGGCCAGC GCCTCC TTTAATCC ]
[+] EMBL BM644900 [ ccgCTGCATCGTGTACGTGATGGCCACG ATCAGCCGAGGGG ACGACCAGGGCGACCGGGAGCTCGGCGGCTTCGTGCCGAACCGTAACCTGCCGCACGCGGAAGAGTGACGGCGAGCGGGGTAACTCGGCCAGCGGCCTCCTTTTGAT TGAAGGTGTAACCGTCGGATTAGCAAAACGAAAGAAAAAAACGAAACATTCTCTGCTCCCAAATGTGATGTATGTGTGCAAGCGTGTGTATGGATGTGTTTGACTGTGTGTGTGTGTGTGTGTGTGGGTACGCTCCGGTGAGAAAGAGAACGATATATGTTGGTGCGTGTGTGTGTATGTATAGAGAGATGGGAACGACAGCATGTCGAGTGGGCGGGCAGGAAAGGTTGAGCTGTATCACTATATATTAATATTTTAATTGTTTTCAATTATAAAAATACATTATCTATTAATAATTTCAGCT]
consensusID : consensus_7269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 876 fasta sequence
[CCGAGAAACTGAACGAGACGTGGCCGATACACTGCCGATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAGTGCATTTGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT-GACGACG-CAGTTCTGCTTCGAGCATCGGG-TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGTGCCGGCACCATGACAGGCTACAGCGACGGGCTGGCTGGCGGGCGTGCAATCGGGGGCAACGGGGGCAACCTGGCTTCGAGCAAGGAACGGCCCGAAACGCCTCATTCGGTGCTAAATCTCGACCCGTACGTCAATATCGCAAACAGCCGCCGGACGACACTGCTCGCCCNGGAGNCACCGATCGGTGGGTCCGACCGGGGACGACAACAAGTACAAGCGGCGCACGCCGAANGAAATCTTCTCGCGCTGGTC]
[+] EMBL BM613928 [CCGAGAAACTGAACGAGACGTGGCCGATACACTGCCGATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAGTGCATTTGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT GACGACG CAGTTCTGCTTCGAGCATCGGG TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCTGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTTTCGTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAAAACGGTGCCGGCACCATGACAGGCT ]
[+] EMBL BM580969 [ ccgGGCCGATACACTGCCGATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAGTGCATTTGCAAGGGGAAAGCAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT GACGACG CAGTTCTGCTTCGAGCATCGGG TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTGTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAAAACGGTGCCGGCA ]
[+] EMBL BX621692 [ GCCGATACACTGCCGATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAGTGCATTTGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT GACGACG CAGTTCTGCTTCGAGCATCGGG TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGTGCCGGCACCATGACAGGCTACAGCGACGGGCTGGCTGGCGGGCGTGCAATCGGGGGCAACGGGGGCAACCTGGCTTCGAGCAAGGAACGGCCCGAAACGCCTCATTCGGTGCTAAATCTCGACCCGTACGTCAATATCGCAAACAGCCGCCGGACGACACTGCTCGCCCNGGAGNCACCGATCGGTGGGTCCGACCGGGGACGACAACAAGTACAAGCGGCGCACGCCGAANGAAATCTTCTCGCGCTGGTC]
[+] EMBL BX622518 [ GCATTTGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGAACACACAAACCAGCGAAGGCGATGGGTCTGTGCAAGTGTCCCAAGCGGCAGGT GACGACG CAGTTCTGCTTCGAGCATCGGG TGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATACCTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGGCTACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGTGCCGGCACCATGACAGGCT ]
[+] EMBL AL696906 [ GCAGATCGCNGAGGTCA TTCTGCTTCGAGCATCGGGCTGAACGTTTGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCACAGTGCAGTCATACATCCAGTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCGGCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTGTTACCATGTCTTTCACTGGAAGTGTCTGAATGCGAGACAGCAACTGCTG CCGCGAACACGG ACCCGG GG CATACCTG CCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCAATCTGGTGTCGCCGGTCGCGGACGTGCTGCGTGTCCGGCTCGGGCAGGTGAACTGGGGCCGGAACGAGCTAGGCTTACCGTTGATTTTGGATGAGAAGCACGACACCGCCGG TACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGTGCCGGCACCATGACAGGCTACAGCGACGGGCTGGCTGGCGGGCGTGCAATCGGGGGCAACGGGGGCAACCTGGCTTCGAGCAAGGAACGGCCCGAAACGCCTCATTCGGTGCTAAATCTCGACCCGTACGTCAATATCGCAAACAG CGCCGGACGACACTGCTCGCCCGGGAGCCACCGATCGGTGGGTCCGACC GGGACGACAACAAGTACAAGCGG GCACGCCGAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7269#0 TACAACATAAAGGGTTTGCCTGCCCAGGTTCTCGTCNCGGGCCGAGCTTGTATGNGTGGG 60
consensus_7269#1 ------------------------------------CCGAG---AAACTGAACGAGACGT 21
** * * ** * * * *
consensus_7269#0 GTCCCAGTAACCGGTGCCCTGGCACCATGACAGGGCTACAAGGCGTACGGNNCTTGTCTG 120
consensus_7269#1 GGCCGATACACTGCCG--ATAGCAGCGTCGCGCGAAAATCGAGCGAAAGCAG--TGCATT 77
* ** * ** * * * *** * * * * * *** * * ** *
consensus_7269#0 TGCGGGGCGTGTGCAATCGGTGGGCANACGGGGGTNCAAACCTGGCTTCGTAGCATAGGA 180
consensus_7269#1 TGCAAGGGGAAAACAAACGGCCGGCCGGCAGCGA-ACACACAAACCAGCGAAGGCGATGG 136
*** ** * *** *** *** * * * ** ** * ** ** * *
consensus_7269#0 TACGGCCCGATNACGCCTCATTCGGTGCTAAATCTCGTACCCGTACGTCTAATATCGGTA 240
consensus_7269#1 GTCTGTGCA--AGTGTCCCAAGCGGCAGGTGACGACGCAGTTCTGCTTCGAGCATCGG-- 192
* * * * * ** *** * ** * * * ** * *****
consensus_7269#0 AGCTACACACTACGCACACGCGGTACAACT-CAAGCCGTGGTTGATCCAATAAGCTCGTT 299
consensus_7269#1 --GTGAACGTT-TGCGAAAACTGTATGGTGGTGAACCACACGAAGTGCAC--AGTGCAGT 247
* ** * ** * * *** * ** * ** ** * *
consensus_7269#0 GTTACACCTTCGTGTGTACAACATTNCTCGCACTACTAGCATAACAGCCGCCGGACGTAC 359
consensus_7269#1 CATACATCCA-GTGGCTGAAGGATAGCGATTTCGACTCCAACTGCACCCTTTGCG----- 301
**** * *** * * ** * * *** * ** ** *
consensus_7269#0 ACTGCTCGCCCGGGAGCCACCGATCGGTGGGTCCGACCGGGACGACAACATAGTACAAGC 419
consensus_7269#1 GCAGTCCCCGTGAAAGCGACGACTGTGTGCGGCTCATCTG--TTACCATGTCTTTCACTG 359
* * * * * *** ** * *** * * * * * ** * * * **
consensus_7269#0 GGCGCACGCCGAAGGAAATCTTCTCGCGCTGGTCCCGCCAGCTGTACGCACCGTCCAGCC 479
consensus_7269#1 GAAGTGTCTGAATGCGAGACAGCAACTGCTGCCCGCGAACACGGCACCCGGCGGCCATAC 419
* * * * * * * **** * ** * * ** * ** *** *
consensus_7269#0 CGGCCCGTTTGGCGCATAGACCTGGTTCCTGGTCGGCACCGGGCTGCTCGGGTTCGTCTG 539
consensus_7269#1 CTGCCCGATCTGCAGCGAGCCCATGTTTCCGCCCAGCA-------ATCTGGTGTCGCCGG 472
* ***** * ** ** ** *** * * * *** ** *** * *
consensus_7269#0 CATCGTGTACGTGATGGCCACGTATCAGCCGAGGGGTACGACCAGGGCGACCGGGAGCTC 599
consensus_7269#1 --TCGCGGACGTGCTG----CGTGTCCGGCTCGGG-------CAGGTGAACTGGGGCCGG 519
*** * ***** ** *** ** * * *** **** ** *** *
consensus_7269#0 GGCGGCTTCGTGCCGAACCGTAACCTGCCGCACGCGGAAGAGTNACGGCGAGCGGTAACT 659
consensus_7269#1 AACGAGCTAG-GCTTACCGTTGATTT------TGGATGAGAAGCACGAC-ACCGCCGGCT 571
** * * ** * * * * * * *** *** * * ** **
consensus_7269#0 CGGCCAGCGCCTCCTTTAATCCGAAGGTGTAACCGTCGGATTAGCAAAACGAAAGAAAAA 719
consensus_7269#1 ACACAAAGGTTTCCTCCAGTTCCGCCGGCGAGCTGATGGTGGGCCAGAACGGT-GCCGGC 630
* * * **** * * * * * * * ** ** **** *
consensus_7269#0 AACGAAACATTCT-CTGCTCCCAAATGTGATGTATGTGTGCAAGCGTGTGTA-TGGATGT 777
consensus_7269#1 ACCATGACAGGCTACAGCGACGGGCTGGCTGGCGGGCGTGCAATCGGGGGCAACGGGGGC 690
* * *** ** * ** * ** * * ****** ** * * * ** *
consensus_7269#0 G-TTTGACTGTGTGTGTGTGTGTGTGTGTGGGTACGCTCCGGTGAGAAAGAGAACGATAT 836
consensus_7269#1 AACCTGGCTTCGAGCAAG---GAACGGCCCGAAACGCCTCATTCGG--------TGCTAA 739
** ** * * * * * * **** * * * * **
consensus_7269#0 ATGTTGGTGCGTGTGTGTGTATGTATAGAGAGATGG-GAACGACAGCATGTCGAGTGGGC 895
consensus_7269#1 ATCTCGACCCGTACGTCAATAT-CGCAAACAGCCGCCGGACGACACTGC-TCGCCCNGG- 796
** * * *** ** *** * * ** * * ****** *** **
consensus_7269#0 GGGCAGGAAAGGTTGAGCTGTATCACTATATATTAATATTTTAATTGTTTTCAATTATAA 955
consensus_7269#1 AGNCACCGATCGGTGGGTCCGACCGGGGACGACAACAAGTACAAGCGGCGCACGCCGAAN 856
* ** * * ** * * * * * * * ** * *
consensus_7269#0 AAATACATTATCTATTAATAATTTCAGCT 984
consensus_7269#1 GAAATCTTCTCGCGCTGGTC--------- 876
** * * * *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||