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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1676 fasta sequence
[TTGTTTTACCCCATTCTAAGTCTCTTATTTATATAATGTTTGCTCACACTTTGCTCTCTTCTATTGTTCTGTTCCAGTCTGAGTGCGTTTTTTCCACTTTTTTCATGTGTGTGCTCTCTGTAAATTATGTAAACTTCTTTTCGCATGATTCAATTTTATTTACAAAATACTGTTTCCATTTTCCATCATCAATAACACACACACACAGTACGTAAAATAGAATGAGCTTAGATTTATTTTGTGTTATTTGAAATCGTGACAAAGAATTTAAATTCAATCTATTAAACCTGCAACGAACAAAAGCCAACGGCAGTTTTAGAGAGAAAACTTGCCTGCATTGAGCACATTTCCTTAAACAGTAATGTACAATAGTTTCAAGAAATGCGTTTGAGTTTAACAATAAAATATGATGGAGATGGACAGATGGATATCGCAACTGATTGTTTTTTTATCGACCGCNATTGCCATACACGTGGAACTCGATCAATGGCGTAAAACAGAAATTTGACCACTCCTCATATATACAGTGCAGTATTAAGAAATGNTTTATCTTTGTCGTTTGATGAGTTTTTGTGNAATAAATTTTCTGGTTTTTTTTGTGTATTAGAACAAAGAATAGGACCACATACGCTTGTCGATGATCGTTTGTTACACTATTTTTAAATCCCCTGTCGTGTGCTTAACGTAAGAGTTCAGTATTTTATACACATTACACATCTAGTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATTATTATTCTTGTAATTTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGCAATGTGTCTCTCTGATGTAGAGCCGTAGAGTATTTGTCATAGTTTATGTTAGCATTTCATTTGTATTAGGTTTTAGCGAAACCAGACGTCTACTTACTGCATTTAAACCCAGGACGGCTCGATGCCCAAATCGCAAGCCCTTCCTTTTTAAGCTAATAGTATTTAGTTATATTACCGATGTTTGTTGGTTATGTTG-ATCT-TTGTGTTGT-TAAATTATAATGCTTAAGTTTTTGAGTTTGATGAGTTTGCTTATTTAGTGTGAACAGATCTAGAAACAATTCTCGATAAACGATTAAATATCCCAGGCTCGATTGTCAGCAACGTATAATGTCTTGCAAGACAGCAATAGATCACGCTTGCCAGATAAATAGTAAAAAAAAACAGAAGAAAAAAACAAACAAACTACATGTTGAACAAGCAATGGTGTAACTACGTAATCAAAAGTCAACCAGTACAGCAGGCCCACATAACCGTTCGTGGCGCGAAGCATCGTTATTGCATACGGCAAACATTCACTCCATGCACTCACATNTGACGTGCAATCGACTGATAATGCTATTAAAACTGAAATGATATAAAGAACATCAATTCTAGTTGCAAAGCGGTTGCACAGAAACAGAGATAAAGAAAGCGCTAATGCGTTTCTCTCGAACTTATTTAGTTTTCTCGTNCATTACTCGTATCTCGCAANGACTTTCTTCGTTCATATCGACCGAAAAGCGAAAAGCTATTGTTAGGAGTTTATACGGATTATTATTATTTTTTTAAGTATATCTTTTTTTGATGATTTATTAAGATAATTTAAAAGGTAAATAAAAGTGTTGTTTAGTCAAATT]
[+] EMBL BX627230 [TTGTTTTACCCCATTCTAAGTCTCTTATTTATATAATGTTTGCTCACACTTTGCTCTCTTCTATTGTTCTGTTCCAGTCTGAGTGCGTTTTTTCCACTTTTTTCATGTGTGTGCTCTCTGTAAATTATGTAAACTTCTTTTCGCATGATTCAATTTTATTTACAAAATACTGTTTCCATTTTCCATCATCAATAACACACACACACAGTACGTAAAATAGAATGAGCTTAGATTTATTTTGTGTTATTTGAAATCGTGACAAAGAATTTAAATTCAATCTATTAAACCTGCAACGAACAAAAGCCAACGGCAGTTTTAGAGAGAAAACTTGCCTGCATTGAGCACATTTCCTTAAACAGTAATGTACAATAGTTTCAAGAAATGCGTTTGAGTTTAACAATAAAATATGATGGAGATGGACAGATGGATATCGCAACTGATTGTTTTTTTATCGACCGCNATTGCCATACACGTGGAACTCGATCAATGGCGTAAAACAGAAATTTGACCACTCCTCATATATACAGTGCAGTATTAAGAAATGNTTTATCTTTGTCGTTTGATGAGTTTTTGTGNAATAAATTTTCTGGT ]
[+] EMBL BX620400 [ TGTTATTTGAAATCGTGACAAAGAATTTAAATTCAATCTATTAAACCTGCAACGAACAAAAGCCAACGGCAGTTTTAGAGAGAAAACTTGCCTGCATTGAGCACATTTNCTTAAACAGTAATGTACAATANTTTCNAGAAAT ]
[+] EMBL AL695242 [ cccgaggtnTTTTTTTATCGACCGCGATTGCCATACACATGGAACTCGATCAATGGCGTAAAACAGAAATTTGACCACTCCTCATATATACAGTGCAGTATTAAGAAATGTTTTATC TTGTCGTTTGATGAGTTTTTGTGTAATAAATTTTCTGTGTTTTTTTGTGTATTAGAACAAAGAATAGGACCACATACGCTTGTCGATGATCGTTTGTTACACTATTTTTAAATCCCCTGTCGTGTGCTTAACGTAAGAGTTCAGTATTTTATACACATTACACATCTAGTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATTATTATTCTTGTAATTTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGCAATGTGTCTCTCTGATGTAGAGCCGTAGAGTATTTGTCATAGTTTATGTTAGCATTTCATTTGTATTAGGTTTTAGCGAAACCAGACGTCTACTTACTGCATTTAAACCCAGGACGGCTCGATGC ]
[+] EMBL AGA280079 [ tttttTTTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGTAATGTGTCTCTCTGATGTAGAGCCGTAGAGTATTTGTCATAGTTTATGTTAGCATTTCATTTGTATTAGGTTTTAGCGAAACCAGACGTCTACTTACTGCATTTAAACCCAGGACGGCTCGATGCCCAAATCGCAAGCCCTTCCTTTTTAAGCTAATAGTATTTAGTTATATTACCGATGTTTGTTGGTTATGTTG ATCT TTGTGTTGT TAAATTATAATGCTTAAGTTTTTGAGTTTGATGAGTTTGCTTATTTAGTGTGAACAGATCTAGAAACAATTCTCGATAAACGATTAAATATCCCAGGCTCGATTGTCAGCAACGTAT ]
[+] EMBL BX624353 [ aaggaTTATGTAGCATCTGNANTGTAGTATAAATTATAATGCTTAAGTTTTTGAGTTTGATGAGTTTGCTTATTTAGTGTGAACAGATCTAGAAACAATTCTCGATAAACGATTAAATATCCCAGGCTCGATTGTCAGCAACGTATAATGTCTTGCAAGACAGCAATAGATCACGCTTGCCAGATAAATAGTAAAAAAAAACAGAAGAAAAAAACAAACAAACTACATGTTGAACAAGCAATGGTGTAACTACGTAATCAAAAGTCAACCAGTACAGCAGGCCCACATAACCGTTCGTGGCGCGAAGCATCGTTATTGCATACGGCAAACATTCACTCCATGCACTCACATNTGACGTGCAATCGACTGATAATGCTATTAAAACTGAAATGATATAAAGAACATCAATTCTAGTTGCAAAGCGGTTGCACAGAAACAGAGATAAAGAAAGCGCTAATGCGTTTCTCTCGAACTTATTTAGTTTTCTCGTNCATTACTCGTATCTCGCAANGACTTTCTTCGTTCATATCGACCGAAAAGCGA ]
[-] EMBL AGA281776 [ GTATAATGTCTTGCAAGACAGCAATAGATCACGCTTGCCAGATAAATAGTAAAAAAAACCGGAAGAAAAAAACAAACAAACTACATGTTGAACAAGCAATGGTGTAACTACGTAATCAAAAGTCAACCAGTACAGCAGGCCCACATAACCGTTCGTGGCGCGAAGCATCGTTATTGCATACGGCAAACATTCACTCCATGCACTCACATTTGACGTGCAATCGACTGATAATGCTATTAAAACTGAAATGATATAAAGAACATCAATTCTAGTTGCAAGGCGGTTGCACAGAAACAGAGATAAAGAAAGCGCTAATGCGTTTCTCTCGAACTTATTTAGTTTTCTCGTTCATTACTCGTATCTCGCAATGACTTTCTTCGTTCATATCGACCGAAAAGCGAAAAGCTATTGTTAGGAGTTTATACGGATTATTATTATTTTTTTAAGTATATCTTTTTTTGATGATTTATTAAGATAATTTAAAAGGTAAATAAAAGTGTTGTTTAGTCAAATT]
consensusID : consensus_7272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[CAGATCGGCACGAGGTGTAAATCCCCTGTCGTGTGCTTACGTAAGAGTCAGTATTTTATACACATTACACATCTAGTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATTATTATTCTTGTAATTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGCAATGTGTCTCTCTGATGTAAGAGCCGTAGAGTATTTGTTCATAGTGTATGTTTGAGGCCATTTTCCAATTTGTAATTAGCGTTTTTAAGCGAAAAACCAGGAACCGTTCTAACTTTTAACCTGGGCNATTTTTAAAAACCCCCACAGGGACGGGGCTCCGAATTGGCCCCCAAAATTACGGGCGAAAGGCCCCTTGTTCCCGT]
[+] EMBL BX468716 [CAGATCGGCACGAGGTGTAAATCCCCTGTCGTGTGCTTACGTAAGAGTCAGTATTTTATACACATTACACATCTAGTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATTATTATTCTTGTAATTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGCAATGTGTCTCTCTGATGTAAGAGCCGTAGAGTATTTGTTCATAGTGTATGTTTGAGGCCATTTTCCAATTTGTAATTAGCGTTTTTAAGCGAAAAACCAGGAACCGTTCTAACTTTTAACCTGGGCNATTTTTAAAAACCCCCACAGGGACGGGGCTCCGAATTGGCCCCCAAAATTACGGGCGAAAGGCCCCTTGTTCCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7272#0 TTGTTTTACCCCATTCTAAGTCTCTTATTTATATAATGTTTGCTCACACTTTGCTCTCTT 60
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 CTATTGTTCTGTTCCAGTCTGAGTGCGTTTTTTCCACTTTTTTCATGTGTGTGCTCTCTG 120
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 TAAATTATGTAAACTTCTTTTCGCATGATTCAATTTTATTTACAAAATACTGTTTCCATT 180
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 TTCCATCATCAATAACACACACACACAGTACGTAAAATAGAATGAGCTTAGATTTATTTT 240
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 GTGTTATTTGAAATCGTGACAAAGAATTTAAATTCAATCTATTAAACCTGCAACGAACAA 300
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 AAGCCAACGGCAGTTTTAGAGAGAAAACTTGCCTGCATTGAGCACATTTCCTTAAACAGT 360
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 AATGTACAATAGTTTCAAGAAATGCGTTTGAGTTTAACAATAAAATATGATGGAGATGGA 420
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 CAGATGGATATCGCAACTGATTGTTTTTTTATCGACCGCNATTGCCATACACGTGGAACT 480
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 CGATCAATGGCGTAAAACAGAAATTTGACCACTCCTCATATATACAGTGCAGTATTAAGA 540
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 AATGNTTTATCTTTGTCGTTTGATGAGTTTTTGTGNAATAAATTTTCTGGTTTTTTTTGT 600
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 GTATTAGAACAAAGAATAGGACCACATACGCTTGTCGATGATCGTTTGTTACACTATTTT 660
consensus_7272#1 -----------------------------------------CAGATCG--GCACGAGGTG 17
* * * *** * *
consensus_7272#0 TAAATCCCCTGTCGTGTGCTTAACGTAAGAGTTCAGTATTTTATACACATTACACATCTA 720
consensus_7272#1 TAAATCCCCTGTCGTGTGCTTA-CGTAAGAGT-CAGTATTTTATACACATTACACATCTA 75
********************** ********* ***************************
consensus_7272#0 GTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATT 780
consensus_7272#1 GTTATTTAGCCTAAGATGTTCGATATCCATATCCCAGGACCGTGTTTTATTATTATTATT 135
************************************************************
consensus_7272#0 ATTATTCTTGTAATTTACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGC 840
consensus_7272#1 ATTATTCTTGTAATT-ACGTTTGTAAGTGTCCATACAGGTCTGAGCTTGATGCTGTTCGC 194
*************** ********************************************
consensus_7272#0 AATGTGTCTCTCTGATGTA-GAGCCGTAGAGTATTTGT-CATAGTTTATGTTAGCATTTC 898
consensus_7272#1 AATGTGTCTCTCTGATGTAAGAGCCGTAGAGTATTTGTTCATAGTGTATGTTTG-AGGCC 253
******************* ****************** ****** ****** * * *
consensus_7272#0 ATTTGTATTAGGTTTTAGCGAAACCAGACGTCTACTTACTGCATTTAAACCCAGGACGGC 958
consensus_7272#1 ATTT---TCCAATTT----GTAATTAG-CGTTT-TTAAGCGAA---AAACCAGGAACCGT 301
**** * *** * ** ** *** * * * * * ***** * ** *
consensus_7272#0 TCGATGCCCAAATCGCAAGCCCTTCCTTTTTAAGCTAATAGTATTTAGTTATATTACCGA 1018
consensus_7272#1 TCTAACTTTTAACC-TGGGCNATTTTTAAAAACCCCCACAGGGACGGGGCTCCGAATTGG 360
** * ** * ** ** * * * * ** * * *
consensus_7272#0 TGTTTGTTGGTTATGTTGATCTTTGTGTTGTTAAATTATAATGCTTAAGTTTTTGAGTTT 1078
consensus_7272#1 CCCCCAAAATTACGGGCGAAAGGCCCCTTGTTCCCGT----------------------- 397
* * ** ***** *
consensus_7272#0 GATGAGTTTGCTTATTTAGTGTGAACAGATCTAGAAACAATTCTCGATAAACGATTAAAT 1138
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 ATCCCAGGCTCGATTGTCAGCAACGTATAATGTCTTGCAAGACAGCAATAGATCACGCTT 1198
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 GCCAGATAAATAGTAAAAAAAAACAGAAGAAAAAAACAAACAAACTACATGTTGAACAAG 1258
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 CAATGGTGTAACTACGTAATCAAAAGTCAACCAGTACAGCAGGCCCACATAACCGTTCGT 1318
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 GGCGCGAAGCATCGTTATTGCATACGGCAAACATTCACTCCATGCACTCACATNTGACGT 1378
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 GCAATCGACTGATAATGCTATTAAAACTGAAATGATATAAAGAACATCAATTCTAGTTGC 1438
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 AAAGCGGTTGCACAGAAACAGAGATAAAGAAAGCGCTAATGCGTTTCTCTCGAACTTATT 1498
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 TAGTTTTCTCGTNCATTACTCGTATCTCGCAANGACTTTCTTCGTTCATATCGACCGAAA 1558
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 AGCGAAAAGCTATTGTTAGGAGTTTATACGGATTATTATTATTTTTTTAAGTATATCTTT 1618
consensus_7272#1 ------------------------------------------------------------
consensus_7272#0 TTTTGATGATTTATTAAGATAATTTAAAAGGTAAATAAAAGTGTTGTTTAGTCAAATT 1676
consensus_7272#1 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||