These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1264 fasta sequence [CCGGCGGAGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTCCCGATGTTTTAGCGCGCATCATCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCAGAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGA-GGGCAACGAT-GTCGGCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAGTACATGAACCGCAAGGGTGGATTCAATCGGCCGTTGGATTTTGTTGCGTAGCGGCATTGCAGATATAC-GGGGGAACGATGGTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATC-TTTTGCCTCTGGTGGAGCTGCTGGCACACGCGTTGTTGACATGTGCCATTCGATCATCATCTATCGGGTCTGCAGGTGCAGATCTAACTGACTCAGGACCGCT-CCCCCCTCAAATGGCACTCTAGTGGATCTAGCCCATTGACACTTTCTTTGCAAACTATTCTTTATCCGTGCTTTTGCCATCATCTTGTTACAGGCAAAGCTCGTCGTTTCTCCACCGTACGGGTCCGACTACTAATCATCTTCATCATTACAGTTAACGTTTTTCCTTTGCGTTTATCATTTCTTAACACTCTACGTTTAACCATCATGATGGTATATTTAAATGTCTCCCCACTCACTGCAAACAGCCTTGCGTGCCTGCGACCGTTCGCAAATGGTTTTGGGTACGAGGTGCGACGCCTCCATAACCGAACAATAGTCAACCAACTAATCACCTCACCTCACACAACACACAAACAAACTGCAACAACGGGTTCCATATTACTGCAATAGTTAATTTTCATATACACCATATACAAAATTTACCACACCACTGCAATAGCCAAAACGCTACATCGTATCACCGC-GGGGAGTGACCCTCGGCCAATGCGCTCCTCAATGAGCTGATTCCAAACAT] [+] EMBL BM585482 [CCGGCGGAGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTCCCGATGTTTTATCGCGCATCATCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCAAAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGA GGGCAACGAT GTCGGCGAGGTGCACGTCA ] [+] EMBL BM584492 [ ccgGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTCCCGATGTTTTAGCGCGCATCATCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCAGAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGA GGGCAACGAT GTCGGCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAGTACATGAACCGCAAGGGTGGATTCAATCGGCCGTTGGATTTTGTTGCGTAGCGGCATTGCAGATATACGGGGGGAACGATGGTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATCTTTTTGCCTCTGGTGGAGCTGCTGGCACACGCGTTGTTGACA ] [+] EMBL BX627759 [ CTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTCCCGATGTTTTAGCGCGCATCATCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCAGAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGA GGGCAACGAT GTCGGCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAGTACATGAACCGCAAGGGTGGATTCAATCGGCCGTTGGATTTTGTTGCGTAGCGGCATTGCAGATATAC GGGGGAACGATGGTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATC TTTTGCCTCTGGTGGAGCTGCTGGCACACGCGTTGTTGACATGTGCCATTCGATCATCATCTATCGGGTCTGCAGGTGCAGATCTAACCGACTCAGGACCGCT C ] [+] EMBL BM589546 [ ccgGCGTGTCCCGATGTTTTAGCGCGCATCGTCTCCACAAAGATGCCTTCGTCGCCCAAGCGCAGGAAGGAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGACCGCAGCGAAAGAGATCGATCCGGAGGGCGGGACCGCAAACGCTCATCTGAGCGGGAAAGAGACCGGGACCGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCGAGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATGGTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGAGATGCTTAAGACGATGGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGGTGGAGGGGCAACGATGGTCGGCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAGTACATGAACCGCAAAGGTGGATTCAATCGGCCGTTGGATTTTGTTGCGTAGCGGCATTGCAGATATAC GGGGGAACGATGGTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATC TTTTGCCTCTGGTGGAGCTGCTGGCACACGTGTTGTTGACATGTGCCATTCGATCATCATCTATCGGGTCTGCAGGTGCAGATCTAACTGACTCAGGACCTCTCCCCCCCTCAAATGGCACTCT ] [+] EMBL BM653779 [ ccGGTGCGAAATACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATC TTTTGCCTCTGGTGGAGCTGCTGGCACACGCGTTGTTGACATGTGCCATTCGATCATCATCTATCGGGTCTGCAGGTGCAGATCTAACTGACTCAGGACCGCT CCCCCCTCAAATGGCACTCTAGTGGATCTAGCCCATTGACACTTTCTTTGCAAACTATTCTTTATCCGTGCTTTTGCCATCATCTTGTTACAGGCAAAGCTCGTCGTTTCTCCACCGTACGGGTCCGACTACTAATCATCTTCATCATTACAGTTAACGTTTTTCCTTTGCGTTTATCATTTCTTAACACTCTACGTTTAACCATCATGATGGTATATTTAAATGTCTCCCCACTCACTGCAAACAGCCTTGCGTGCCTGCGACCGTTCGCAAATGGTTTTGGGTACGAGGTGCGACGCCTCCATAACCGAACAATAGTCAACCAACTAATCACCTCACCTCACACAACACACAAACAAACTGCAACAACGGGTTCCATATTACTGCAATAGTTAATTTTCATATACACCATATACAAAATTTACCACACCACTGCAATAGCCAAAACGCTACATCGTATCACCGC GGGGAGTGACCCTCGGCCAATGCGCTCCTCAATGAGCTGATTCCAAACA ] [+] EMBL BM633439 [ GATGGCATATTTATATGTGTCCCCACTCGCTGGAAACAGACTTGCGTGCCTGCGACCGTTCGCAAATGGTTTTGGGTACGAGGTGCGACGCCTCCATAACCGAACAATAGTCAACCAACTAATCACCTCACCTCACACAACACACAAACAAACTGCAACAACGGGTTCCATATTACTGCAATAGTTAATTTTCATATACACCATATACAAAATTTACCACACCACTGCAATAGCCAAAACGCTACATCGTATCACCGCGGGGGAGTGACCCTCGGCCAATGCGCTCCTCAATGAGCTGATTCCAAACAT] consensusID : consensus_7281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1006 fasta sequence [AGAATCCCCGAGGTTTAAGAAGAAGAAGAAGAAGAAGAAAAAGCGGAGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTACCCGATGTTTTAGCGCGCATACATACTACCACAAAGATGCCTATCGTCGCCCAAGCGCAGTGAAGGCAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGGACCGCAGGCGAACAGAGATCGATCCGGAGGGCCGGGACGGNAAACGCGTCAATCAGGCAGCGGGAAAAGGAGACCGGGGACCCGTGAGCCGANGANNCAGCGNGGCCGGCGGAACAGGTACAACGGAATCCCAGCATCAAAGATACGACAGTATACGCAGAATTCGANGGTNCACGTAACAGAAACCCGATTGCCCATACGGACAAAACACGGTACACGACCCGATTGCTACCAACNAGGATGAAGCCCCATGGGGNAACCCGGAAANCGCCGGAACCGACCGCAAAGGGCCACAAACACAGCCCCCGGAACAGCACCAACCAGNAGAANGCCGTCAAACGCACCCGCAGCANGGGNNGCCACACCATGGAACGCGCCCACCCAGGCACCACCGGAACCGGACAAANAGNGCACCAAACCCCACACGGCCGAGCCCGCGCCACAAACCANAAATGAACNAAGAACNCCAAAAAGCAGCNCACCCGNCAATCANAAATACACACGATCACAANAAGCCCGAGCCAAAATAACCNATAAAATACCAAACCCACNAAGATCACCACCATGGGAAAAAACCCTGGACCAACGGAGANNCGNCTCGCGAACACTACATCCACAAATACGNAGCANCACCCATANNGAGCAAAAACACAACAGCNCCACAGGCCCCGACAACNTGCGANGCAAAANAGGCCACNCACAGACCAACCANCCCCGCGCACGTGCAAAAAACGAAGANATGACGGAATAGCCCGCNACACACCCNACGCAACATTGACCC] [+] EMBL AL693134 [AGAATCCCCGAGGTTTAAGAAGAAGAAGAAGAAGAAGAAAAAGCGGAGAAGAGTGTCAGAAGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGTACCCGATGTTTTAGCGCGCATACATACTACCACAAAGATGCCTATCGTCGCCCAAGCGCAGTGAAGGCAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGGACCGCAGGCGAACAGAGATCGATCCGGAGGGCCGGGACGGNAAACGCGTCAATCAGGCAGCGGGAAAAGGAGACCGGGGACCCGTGAGCCGANGANNCAGCGNGGCCGGCGGAACAGGTACAACGGAATCCCAGCATCAAAGATACGACAGTATACGCAGAATTCGANGGTNCACGTAACAGAAACCCGATTGCCCATACGGACAAAACACGGTACACGACCCGATTGCTACCAACNAGGATGAAGCCCCATGGGGNAACCCGGAAANCGCCGGAACCGACCGCAAAGGGCCACAAACACAGCCCCCGGAACAGCACCAACCAGNAGAANGCCGTCAAACGCACCCGCAGCANGGGNNGCCACACCATGGAACGCGCCCACCCAGGCACCACCGGAACCGGACAAANAGNGCACCAAACCCCACACGGCCGAGCCCGCGCCACAAACCANAAATGAACNAAGAACNCCAAAAAGCAGCNCACCCGNCAATCANAAATACACACGATCACAANAAGCCCGAGCCAAAATAACCNATAAAATACCAAACCCACNAAGATCACCACCATGGGAAAAAACCCTGGACCAACGGAGANNCGNCTCGCGAACACTACATCCACAAATACGNAGCANCACCCATANNGAGCAAAAACACAACAGCNCCACAGGCCCCGACAACNTGCGANGCAAAANAGGCCACNCACAGACCAACCANCCCCGCGCACGTGCAAAAAACGAAGANATGACGGAATAGCCCGCNACACACCCNACGCAACATTGACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7281#0 ---------------------------------------CCGGCGGAGAAGAGTGTCAGA 21 consensus_7281#1 AGAATCCCCGAGGTTTAAGAAGAAGAAGAAGAAGAAGAAAAAGCGGAGAAGAGTGTCAGA 60 ****************** consensus_7281#0 AGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGT 81 consensus_7281#1 AGAAAGGAAGGCTTCGGGGCTCGGAATACGATGCCGGCGTAGCTGCTAGGTTATGCGTGT 120 ************************************************************ consensus_7281#0 -CCCGATGTTTTAGCGCGCAT---CATCTCCACAAAGATGCCT-TCGTCGCCCAAGCGCA 136 consensus_7281#1 ACCCGATGTTTTAGCGCGCATACATACTACCACAAAGATGCCTATCGTCGCCCAAGCGCA 180 ******************** * ************** **************** consensus_7281#0 G-GAAGG-AGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGG-ACCGCAG-CGAA-AG 191 consensus_7281#1 GTGAAGGCAGCGCGAGCGGCCAAGACGCCGTAAGCGTTCCAGGGGACCGCAGGCGAACAG 240 * ***** ************************************ ******* **** ** consensus_7281#0 AGATCGATCCGGAGGGC-GGGACCGCAAACGC-TCATCAGAGCGGGAAAGAGACCGGGAC 249 consensus_7281#1 AGATCGATCCGGAGGGCCGGGACGGNAAACGCGTCAATCAGGCAGCGG-GAAAAGGAGAC 299 ***************** ***** * ****** *** ** * ** * * *** consensus_7281#0 CGTGAGCGAGATCGGGGCCGGCGAAAGTCACGATCCAGATCAAGATCGCGTTCGAGATCG 309 consensus_7281#1 CGGGGAC----CCGTGAGCCGANGANNCAGCGNGGCCGGC--GGAACAGGTACAA---CG 350 ** * * ** * * * * ** * * ** * ** * * ** consensus_7281#0 AGGTCGTACGAACCGATGCCATCGTCATCGTCACGCCGTGCTCCACAGATGAAGCCCATG 369 consensus_7281#1 GAATCCCA-GCATCAAAGATA-CGACAGTAT-ACGCAGAATTCGANGGTNCACGTAACAG 407 ** * * * * * * * ** ** * **** * ** * * * * * consensus_7281#0 GTACCGGAATCCGAACTCGAGGGCAAAACGCCCGAGGAGCAGGA-GATGCTTAAGACGAT 428 consensus_7281#1 AAACCCGATTGCCCATACGGACAAAACACGGTACACGACCCGATTGCTACCAACNAGGAT 467 *** ** * * * ** ** *** * ** * * * * * * * *** consensus_7281#0 GGGCTTCTGTGGCTTTGATACGACGAAAGGCAAAAAGG----TGGAGGGCAACGATGTCG 484 consensus_7281#1 GAAGCCCCATGGGGN-AACCCGGAAANCGCCGGAACCGACCGCAAAGGGCCACAAACACA 526 * * *** * ** * * * ** * ***** ** * * consensus_7281#0 GCGAGGTGCACGTCATACTCAAGCGCAAATATCGACAG-TACATGAACCGCAAGGGTGGA 543 consensus_7281#1 GCCCCCGGAACAGCACCAACCAGNA-GAANGCCGTCAAACGCACCCGCAGCANGGGNNGC 585 ** * ** ** * ** ** ** ** ** * *** *** * consensus_7281#0 TTCAATCGGCCGTTGGATTTTGTTGCGTAG-CGGCATTGCAGATATACGGGGGAACGATG 602 consensus_7281#1 CACA-----CCATGGAACGCGCCCACCCAGGCACCACCGGAACCGGACAAANAGNGCACC 640 ** ** * * * * ** * ** * * ** * consensus_7281#0 GTGCGAAACACTTGCCAGCCAGTGTCAGCTCGTAGCCGCCATCTTTTGCCTCTGGTGGAG 662 consensus_7281#1 AAACCCCACACGGCCGAGCCCGCGCCACAAACCANAAATGAACNAAGAACNCCAA-AAAG 699 * **** * **** * * ** * * * * * ** consensus_7281#0 CTGCTGGCACACGCGTTGTTGACATGTGCCATT-CGATCATCATCTATCGGGTCTGCAGG 721 consensus_7281#1 CAGCNCACCCGNCAATCANAAATACACACGATCACAANAAGCCCGAGCCAAAATAACCNA 759 * ** * * * * * * ** * * * * * * consensus_7281#0 TGCAGATCTAACTGACTCAGGACCGCTCCCCCCTCAAATGGCACTCTAGTGGATCTAGCC 781 consensus_7281#1 TAAAATACCAAACCCACNAAGATCAC--CACCATGGGAAAAAACCCTGG--------ACC 809 * * * ** * ** * * * ** * * ** ** * ** consensus_7281#0 CATTGACACTTTCTTTGCAAACTATTCTTTATCCGTGCTTTTGCCATCATCTTGTTACAG 841 consensus_7281#1 AACGGAGANNCGNCTCGCGAAC-ACTACATCCACAAATACGNAGCANCACCCATANNGAG 868 * ** * * ** *** * * * * ** ** * ** consensus_7281#0 GCAAAGCTCGTCGTTTCTCCACCGTACGGGTCCGACTACTAATCATCTTCATCATTACAG 901 consensus_7281#1 CAAAAACACAACAGCNCCACA------GGCCCCGACAACNTGCGANG-----CAAAANAG 917 *** * * * * ** ** ***** ** * ** * ** consensus_7281#0 TTAACGTTTTTCCTTTGCGTTTATCATTTCTTAACACTCTACGTTTAACCATCATGATGG 961 consensus_7281#1 GCCACNCAC-------AGACCAACCANCCCCGCGCAC-----GTGCAAAAA--ACGAAGA 963 ** * ** * *** ** ** * * ** * consensus_7281#0 TATATTTAAATGTCTCCCCACTCACTGCAAACAGCCTTGCGTGCCTGCGACCGTTCGCAA 1021 consensus_7281#1 NATGACGGAATAGCCCGCNACACACCCNACGCAACATTGACCC----------------- 1006 ** *** * * * ** *** * ** * *** consensus_7281#0 ATGGTTTTGGGTACGAGGTGCGACGCCTCCATAACCGAACAATAGTCAACCAACTAATCA 1081 consensus_7281#1 ------------------------------------------------------------ consensus_7281#0 CCTCACCTCACACAACACACAAACAAACTGCAACAACGGGTTCCATATTACTGCAATAGT 1141 consensus_7281#1 ------------------------------------------------------------ consensus_7281#0 TAATTTTCATATACACCATATACAAAATTTACCACACCACTGCAATAGCCAAAACGCTAC 1201 consensus_7281#1 ------------------------------------------------------------ consensus_7281#0 ATCGTATCACCGCGGGGAGTGACCCTCGGCCAATGCGCTCCTCAATGAGCTGATTCCAAA 1261 consensus_7281#1 ------------------------------------------------------------ consensus_7281#0 CAT 1264 consensus_7281#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||