These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1217 fasta sequence [AGTTAAAGTGGGCGAGTAAAACCCAGTGCTTTTCAGTTTGTTGTGGTGCTTTCTAAACATTTTTAGATAGCGCTCGTACGATAGTGTTGGAAAACGATGTTGGAAAAGTCACTAATGTTATCGAAATTCAGAGGAAGTCTGCTGGGCGCCCTGGTAGGCGATTGCTGTGGTGCACCATTCGAAGGTCAACTCATGGACAGTGGAGCGAAGTTGATTTTAAAGAAAAATCTTGACAAATTGGAAGGGCCCCCATTTAACGCTCCGTACAAAAAGTACACGGACGATACGGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAGCGGATACTCGCAAAAGCTGCTGGCAAAGAACTATGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGC-GGTGGGGGAAGTGTTTCGCAAACTGCGGCAAACCAAGATCGCCGATCCGACGTGCCCCGCCATGGCTCAGTTCAACGGTAGTGGCTCGTTCGGTAACGGTGCAGCCATGCGCATTTCCCCGGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGGCTGGTGAAGGAATCGTCTGAGATAACGCACACCAACGTGCTTGGTGTGAACGGGGCGATTCTGCAGGCGTTGGCCATCCGGCAGAGCTTACTGTTGAATCCGAACGAACCGTTCTGCTGGAAAGCATTTCTTGCCGAGCTGAAGCAGCACATGGTCGAGATAGAAAAGGGAAACGATCCCGACCTGGATGCAAACCCGAATGCGTACGAAAAACAGCTGCAAAACATGGAAACGCTGCTAGACCATCGGGTGGACCCGTCGGACGAGAATGTGCTGAACCTGTTGGGACACAGCGTGGCAGCGCTGTACTCCGTCCCCACGGCAGTGTACTGCTTCCTGCGGCACACGCAAGACCTGCTGAAGGATACGGATCGAAAATCGTTCCGCAATACGCTTGAGTATGCTATCTCGCTTGGTGGGGATTGTGATACGATCGGTAGCATGGCGTGCGCAATCAGTGGCGCCTACTACGGTGAGCCTGCCATTTCAAGCGCTTTGCTGAAGCACTGCGAAAGCGCTGACAGTGTTGCGGAGCTTGCGGAGCAACTGTTCCAGGTTGCCGGCACACAGTGACGTGTAAAGCATCACAGTAGCCATAGCGTGTAGTATGTAGGTGGTGTGTGGTTCAATAAACCGTTCCCCGA] [+] EMBL CNS08SOV [AGTTAAAGTGGGCGAGTAAAACCCAGTGCTTTTCAGTTTGTTGTGGTGCTTTCTAAACATTTTTAGATAGCGCTCGTACGATAGTGTTGGAAAACGATGTTGGAAAAGTCACTAATGTTATCGAAATTCAGAGGAAGTCTGCTGGGCGCCCTGGTAGGCGATTGCTGTGGTGCACCATTCGAAGGTCAACTCATGGACAGTGGAGCGAAGTTGATTTTAAAGAAAAATCTTGACAAATTGGAAGGGCCCCCATTTAACGCTCCGTACAAAAAGTACACGGACGATACGGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAGCGGATACTCGCAAAAGCTGCTGGCAAAGAACTATGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGC GGTGGGGGAAGTGTTTCGCAAACTGCGGCAAACCAAGGTCGCCGATCCGACGTGCCCCGCCATGGCTCAGTTCAACGGTAGTGGCTCGTTCGGTAACGGTGCAGCCATGCGCATTTCCCCGGTCGCACTGTACTGCGTGAGCAAGAGCATCGACGAGCTGGTCCGGCTGGTGAAGGAATCGTCTGAGATAACGCACACCAACGTGCTTGGTGTGAACGGGGCGATTCTGCAGGCGTTGGCCATCCGGCAGAGCTTACTGTTGAATCCGAACGAACCGTTCTGCTGGAAAGCATTTCTTGCCGAGCTGAAGCAGCACATGGTTGAGATAGAAAAGGGAAACGATCCCGACCTGGATGCAAATCCGAATGCGTACGAAAAACAGCTGCAAAACATGGAAACCCTGCTAGACCATCGGGTGGACCCGTCGGACGAGAATGTGCTGAACCTGTTGGGACACAGCGTGGCAGCGCTGTACTCCGTCCCCACGGCAGTGTACTGCTTCCTGCGGCACACGCAAGACCTGCTGAAGGATACGGATCGAAAATCGTTCCGCAATACGCTTGAGTATGCTATCTCGCTTGGTGGGGATTGTGATACGATCGGTAGCATGGCGTGC ] [+] EMBL BX617180 [ AAGGTCAACTAATGGACAGTGGAGCGAAGTTGATTTTAAAGAAAAATCTTGACAAATTGGAAGGGCCCCCATTTAACGCTCCGTACAAAAAGTACACGGACGATACGGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAACGGATACTCGCAAAAGCTGCTGGCAAAGAACTTTGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGC GGTGGGGGAGGTGTTTCGCAAACTACGGCAAACCAAGATCGCCGATCCGACGGGTCCCGCCATGGCTCAGTTCAACGGTAGTGGCTCGTTCGGTAACGGTGCAGCCATGCGCATTTCCCCGGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGGCTGGTGAAAGAATCGTCTGAGATAACGCACACCAACGTGCTTGGTGTGA ] [-] EMBL CNS08SOW [ AGAAAAATTTTGACAAATTGG AGGGCCCCCATTTAACGCTCCGTACAAAAAGTACACGGACGATACGGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAGCGGATACTCGCAAAAGCTGCTGGCAAAGAACTATGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGC GGTGGGGGAAGTGTTTCGCAAACTGCGGCAAACCAAGATCGCCGATCCGACGTGCCCCGCCATGGCTCAGTTCAACGGTAGTGGCTCGTTCGGTAACGGTGCAGCCATGCGCATTTCCCCGGTCGCACTGTACTGCGTGAGCAAGAGCATCGACGAGCTGGTCCGGCTGGTGAAGGAATCGTCTGAGATAACGCACACCAACGTGCTTGGTGTGAACGGGGCGATTCTGCAGGCGTTGGCCATCCGGCAGAGCTTACTGTTGAATCCGAACGAACCGTTCTGCTGGAAAGCATTTCTTGCCGAGCTGAAGCAGCACATGGTTGAGATAGAAAAGGGAAACGATCCCGACCTGGATGCAAATCCCAATGCGTACGAAAAACAGCTGCAAAACATGGAAACCCTGCTAGACCATCGGGTGGACCCGTCGGACGAGAATGTGCTGAACCTGTTGGGACACAGCGTGGCAGCGCTGTACTCCGTCCCCACGGCAGTGTACTGCTTCCTGCGGCACACGCAAGACCTGCTGAAGGATACGGATCGAAAATCGTTCCGCAATACGCTTGAGTATGCTATCTCGCTTGGTGGGGATTGTGATACGATCGGTAGCATGGCGTGCGCGATCAGTGGCGCCTACTACGGTGAGCCTGCCATTTCAAGCGCTTTGCTGAAGCACTGCGAAAGTGCTGACAGTGTTGCGGAGCTTGCGGAGCAACTGTTCCAGGTTGCCAGCACACAGTGACGTGTAAAGCATCACAGTAGCCATAGCGTGTAGTATGTAGGTGGTGTGTGGTTCAATAAACCGTTCCCCGA] [+] EMBL BX628235 [ TTGGAAGGGCCCCCATTTAACGCTCCGTACAAAAAGTACACGGACGATACGGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAGCGGATACTCGCAAAAGCTGCTGGCAAAGAACTATGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGCGGGTGGGGGAAGTGTTTCGCAAACTGCGGCAAACCAAGATCTCCGATCCGACGGGCCCCGCCATGGCTCAGTTCAACGGTAGTGGCTCGTTCGGTAACGGTGCAGCCATGCGCATTTCCCCGGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGGCTGGTGAAGGAATCGTCTGAGATAACGCACACCAACGTGCTTGGTGTGAACGGGGCGATTCTGCAGGCGTTGGCCATCCGGCAGAGCTTACTGTTGAATCCGAACGAACCGTTCTGCTGGAAAGCATTTCTTGCCGAGCTGAAGCAGCACATGGTCGAGATAGAAAAGGGAAACGATCCCGACCTGGATGCAAACCCGAATGCGTACGAAAAACAGCTGCAAAACATGGAAACGCTGCTAGACCATCGGGTGGACCCGTCGGACGAGAATGTGCTGAACCTGTTGGGACACAGCGTGGCAGCGCTGTACTCCGTCCCCACGGCAGTGTACTGCTTCCTGCGGCACACGCAAGACCTGCTGAAAGATACGGATCGAAAATCGTTCCGCAATACGCTTGAGTA ] [+] EMBL BX611108 [ GCCATGGCTCAGTTCAACGGTAGTGGCTCGTTCGGTAACGGTGCAGCCATGCGCATTTCCCCGGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGGCTGGTGAAGGAATCGTCTGAGATAACGCACACCAACGTGCTTGGTGTGAACGGGGCGATTCTGCAGGCGTTGGCCATCCGGCAGAGCTTACTGTTGAATCCGAACGAACCGTTCTGCTGGAAAGCATTTCTTGCCGAGCTGAAGCAGCACATGGTCGAGATAGAAAAGGGAAACGATCCCGACCTGGATGCAAACCCGAATGCGTACGAAAAACAGCTGCAAAACATGGAAACGCTGCTAGACCATCGGGTGGACCCGTCGGACGAGAATGTGCTGAACCTGTTGGGACACAGCGTGGCAGCGCTGTACTCCGTCCCCACGGCAGTGTACTGCTTCCTGCGGCACACGCAAGACCTTCTGAAGGATACGGATCGAAAATCGTTCCGCAATACGCTTGAGTATGCTATCTCGCTTGGTGGGGATTGTGATACGATCGGTAGCATGGCGTGCGCAATCAGTGGCGCCTACTACGGTGAGCCTGCCATTTCAAGCGCTTTGCTGAAGCACTGCGAAAGCGCTGACAGTGTTGCGGAGCTTGCGGAGCAACTGTTCCAGGTTGCCGGCACACAGTGACGTGTAAAGCATCACAGTAGCCATAGCGTGTAGTATGTAGGTGGTGTGT ] [+] EMBL BX609346 [ GTAGTGGCTCGTTCGGTAACGGTGCAGCCATGCGCATTTCCCCGGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGGCTGGTGAAGGAATCGTCTGAGATAACGCACACCAACGTGCTTGGTGTGAACGGGGCGATTCTGCAGGCGTTGGCCATCCGGCAGAGCTTACTGTTGAATCCGAACGAACCGTTCTGCTGGAAAGCATTTCTTGCCGAGCTGAAGCAGCACATGGTCGAGATAGAAAAGGGAAACGATCCCGACCTGGATGCAAACCCGAATGCGTACGAAAAACAGCTGCAAAACATGGAAACGCTGCTAGACCATCGGGTGGACCCGTCGGACGAGAATGTGCTGAACCTGTTGGGACACAGCGTGGCAGCGCTGTACTCCGTCCCCACGGCAGTGTACTGCTTCCTGCGGCACACGCAAGACCTTCTGAAGGATACGGATCGAAAATCGTTCCGCAATACGCTTGAGTATGCTATCTCGCTTGGTGGGGATTGTGATACGATCGGTAGCATGGCGTGCGCAATCAGTGGCGCCTACTACGGTGAGCCTGCCATTTCAAGCGCTTTGCTGAAGCACTGCGAAAGCGCTGACAGTGTTGCGGAGCTTGCGGAGCAACTGTTCCAGGTTGCCGGCACACAGTGACGTGTAAAGCAT ] consensusID : consensus_7284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCGCGGCTGTGCGCGTTAAAGTGGGCGAGTAAAACCCAGTGCTTTGCAGTTTGTTGTGGTGCTTTCTTAACATTTTTAGATAGCGTTCGCACGACAGCGCTAAAACGATGTTGGAGAAGTCACTAATGTTATCGAAATTCAGAGGAAGTCTGCTGGGCGCCCTGGTAGGCGATTGCTGTGGTGCACCATTCGAAGGTCAACTAATGGACAGTGGAGCGAAGTTGATTTTAAAGAAAAATCTTGACAAATTGGAAGGACCCCCATTTAACGGTTCGTAGCAATAGGGTTCTTTCGGATGCTGGCATAACAATCCTTTTGGTATATTTGTAGCTCCGTACAAAAAGTACACGGACGATACGGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAACGGATACTCGCAAAAGCTGCTGGCAAAGAACTATGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGCGGTGGGGGAAGTGTTTTGCAAACTGCGGCAAACCAAGATCGCCGATCCGTGCCCCGCCATGGCTCAGTTCAACGGTAGTGGATCGTTCGGTAACGGTGCAGCCATGCGCATTTCTCCGGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGACTGGTGAAGGA] [+] EMBL BM646356 [CCGCGGCTGTGCGCGTTAAAGTGGGCGAGTAAAACCCAGTGCTTTGCAGTTTGTTGTGGTGCTTTCTTAACATTTTTAGATAGCGTTCGCACGACAGCGCTAAAACGATGTTGGAGAAGTCACTAATGTTATCGAAATTCAGAGGAAGTCTGCTGGGCGCCCTGGTAGGCGATTGCTGTGGTGCACCATTCGAAGGTCAACTAATGGACAGTGGAGCGAAGTTGATTTTAAAGAAAAATCTTGACAAATTGGAAGGACCCCCATTTAACGGTTCGTAGCAATAGGGTTCTTTCGGATGCTGGCATAACAATCCTTTTGGTATATTTGTAGCTCCGTACAAAAAGTACACGGACGATACGGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAACGGATACTCGCAAAAGCTGCTGGCAAAGAACTATGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGCGGTGGGGGAAGTGTTTTGCAAACTGCGGCAAACCAAGATCGCCGATCCGTGCCCCGCCATGGCTCAGTTCAACGGTAGTGGATCGTTCGGTAACGGTGCAGCCATGCGCATTTCTCCGGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGACTGGTGAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7284#0 -------------AGTTAAAGTGGGCGAGTAAAACCCAGTGCTTTTCAGTTTGTTGTGGT 47 consensus_7284#1 CCGCGGCTGTGCGCGTTAAAGTGGGCGAGTAAAACCCAGTGCTTTGCAGTTTGTTGTGGT 60 ******************************* ************** consensus_7284#0 GCTTTCTAAACATTTTTAGATAGCGCTCGTACGATAGTGTTGGAAAACGATGTTGGAAAA 107 consensus_7284#1 GCTTTCTTAACATTTTTAGATAGCGTTCGCACGACAGCGCT--AAAACGATGTTGGAGAA 118 ******* ***************** *** **** ** * * ************** ** consensus_7284#0 GTCACTAATGTTATCGAAATTCAGAGGAAGTCTGCTGGGCGCCCTGGTAGGCGATTGCTG 167 consensus_7284#1 GTCACTAATGTTATCGAAATTCAGAGGAAGTCTGCTGGGCGCCCTGGTAGGCGATTGCTG 178 ************************************************************ consensus_7284#0 TGGTGCACCATTCGAAGGTCAACTCATGGACAGTGGAGCGAAGTTGATTTTAAAGAAAAA 227 consensus_7284#1 TGGTGCACCATTCGAAGGTCAACTAATGGACAGTGGAGCGAAGTTGATTTTAAAGAAAAA 238 ************************ *********************************** consensus_7284#0 TCTTGACAAATTGGAAGGGCCCCCATTTAACG---------------------------- 259 consensus_7284#1 TCTTGACAAATTGGAAGGACCCCCATTTAACGGTTCGTAGCAATAGGGTTCTTTCGGATG 298 ****************** ************* consensus_7284#0 --------------------------------CTCCGTACAAAAAGTACACGGACGATAC 287 consensus_7284#1 CTGGCATAACAATCCTTTTGGTATATTTGTAGCTCCGTACAAAAAGTACACGGACGATAC 358 **************************** consensus_7284#0 GGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAGCGGATACTCGCAAAAGCT 347 consensus_7284#1 GGCAATGACGATACAAACGGCGAGAGCGCTGGTCGACCCGAACGGATACTCGCAAAAGCT 418 ***************************************** ****************** consensus_7284#0 GCTGGCAAAGAACTATGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGC 407 consensus_7284#1 GCTGGCAAAGAACTATGTGGTCGAATTCTTCAAAGAACCGAACCGCGGATACGGAGCAGC 478 ************************************************************ consensus_7284#0 GGTGGGGGAAGTGTTTCGCAAACTGCGGCAAACCAAGATCGCCGATCCGACGTGCCCCGC 467 consensus_7284#1 GGTGGGGGAAGTGTTTTGCAAACTGCGGCAAACCAAGATCGCCGATCCG---TGCCCCGC 535 **************** ******************************** ******** consensus_7284#0 CATGGCTCAGTTCAACGGTAGTGGCTCGTTCGGTAACGGTGCAGCCATGCGCATTTCCCC 527 consensus_7284#1 CATGGCTCAGTTCAACGGTAGTGGATCGTTCGGTAACGGTGCAGCCATGCGCATTTCTCC 595 ************************ ******************************** ** consensus_7284#0 GGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGGCTGGTGAAGGAATC 587 consensus_7284#1 GGTCGCACTGTACTGCGTGAACAAGAGCATCGACGAGCTGGTCCGACTGGTGAAGGA--- 652 ********************************************* *********** consensus_7284#0 GTCTGAGATAACGCACACCAACGTGCTTGGTGTGAACGGGGCGATTCTGCAGGCGTTGGC 647 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 CATCCGGCAGAGCTTACTGTTGAATCCGAACGAACCGTTCTGCTGGAAAGCATTTCTTGC 707 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 CGAGCTGAAGCAGCACATGGTCGAGATAGAAAAGGGAAACGATCCCGACCTGGATGCAAA 767 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 CCCGAATGCGTACGAAAAACAGCTGCAAAACATGGAAACGCTGCTAGACCATCGGGTGGA 827 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 CCCGTCGGACGAGAATGTGCTGAACCTGTTGGGACACAGCGTGGCAGCGCTGTACTCCGT 887 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 CCCCACGGCAGTGTACTGCTTCCTGCGGCACACGCAAGACCTGCTGAAGGATACGGATCG 947 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 AAAATCGTTCCGCAATACGCTTGAGTATGCTATCTCGCTTGGTGGGGATTGTGATACGAT 1007 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 CGGTAGCATGGCGTGCGCAATCAGTGGCGCCTACTACGGTGAGCCTGCCATTTCAAGCGC 1067 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 TTTGCTGAAGCACTGCGAAAGCGCTGACAGTGTTGCGGAGCTTGCGGAGCAACTGTTCCA 1127 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 GGTTGCCGGCACACAGTGACGTGTAAAGCATCACAGTAGCCATAGCGTGTAGTATGTAGG 1187 consensus_7284#1 ------------------------------------------------------------ consensus_7284#0 TGGTGTGTGGTTCAATAAACCGTTCCCCGA 1217 consensus_7284#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||