These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 711 fasta sequence [CCGGTCCAGGAAGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAACAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTACTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCTCGGCAGCAAGTCCGGTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCATGGTGTTTGAG] [+] EMBL BM599767 [CCGGTCAAGGAAGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCTGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAGCAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTGCTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCCCGTCAGCAGGTCCGGTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCAT ] [+] EMBL BM587785 [ CCGGGAAGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAACAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTACTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCTCGGCAGCAAGTCCGGTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCATGGTGTTTGAG] [+] EMBL BM589276 [ ccgCAAGGAGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAACAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTACTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCTCGGCAGCAAGTCCGGTCGCCGGTAACGAACATC ] consensusID : consensus_7288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence [CGACCCACGCGTCCGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGCGAGAGAGAATTTAGGATAGATTCCTTCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAGCAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAAGTGCTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCCCGGCAGCAGGTCCGTTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCAT] [+] EMBL BM647101 [CGACCCACGCGTCCGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTGATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGTGTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGGGACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTGTCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGAGAGCGAGAGAGAATTTAGGATAGATTCCTTCGCCTGGCCGAGTGCATTGCATTTGGGACCAACAATATACTGATAGCGCGGCACCGACCGACGGCAGCAGGCACCCATCATGATCGGTGGATTGTTCGTGTACAACCATAAGGGAGAAGTGCTGATCTCCCGCGTGTACCGCGATGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCCCGGCAGCAGGTCCGTTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCAT] [+] EMBL BM577900 [ GGTGCGCAAGTGTGTTTGTGCGGCTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCGCGGGTTGCCTTCCCATCCGGAGAGATGTTTGATAAGCACGCACACGGGCTGTG ] consensusID : consensus_7288#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [CGACCCACGCGTCCGAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCACAATGTGAACGCCGCCATGGTGTTTGAGTTTCTGCTGAAGATAATCGACGTGATGCAGTCGTACTTTGGCAAGATTTCGGAGGAAAACATCAAGAACAACTTCGTGCTGATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAAAACTCGGACACGGGTGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGACGAAGGAGGAGCAGGCCCAGATAACGTCCCAGGTGACGGGCCAGATCGGATGGCGCCGGGAAGGCATCAAGTACCGCCGGAACGAGCTGTTCCTGGACGTGCTCGAGTACGTGAATCTGCT] [+] EMBL BM602965 [CGACCCACGCGTCCGAGCGGGCAAATATCTGGCTGGCGGCCGTAACGAAGCACAATGTGAACGCCGCCATGGTGTTTGAGTTTCTGCTGAAGATAATCGACGTGATGCAGTCGTACTTTGGCAAGATTTCGGAGGAAAACATCAAGAACAACTTCGTGCTGATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAAAACTCGGACACGGGTGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGACGAAGGAGGAGCAGGCCCAGATAACGTCCCAGGTGACGGGCCAGATCGGATGGCGCCGGGAAGGCATCAAGTACCGCCGGAACGAGCTGTTCCTGGACGTGCTCGAGTACGTGAATCTGCT] consensusID : consensus_7288#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GCAGAATCGCCCGAGGTATTTCGGAGGAAAACATCAAGAACAACTTCGTGCTGATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAAAACTCGGACACGGGCGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGACGAAGGAGGAGCAGGCCCAGATAACGTCCCAGGTGACGGGCCAGATCGGATGGCGGCGGGAAGGCATCAAGTACCGCGGAACGAGCTGTTCCTCGACGTGCTCGAGTACGTGAATCTGCTGATGAGCCCGCAGGGCCAGGTGCTGTCCGCGCACGTCGCCGGTAAGGTCGTGATGAAGTCGTACCTGTCCGGCATGCCGGAGTGCA] [+] EMBL AL695716 [GCAGAATCGCCCGAGGTATTTCGGAGGAAAACATCAAGAACAACTTCGTGCTGATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAAAACTCGGACACGGGCGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGACGAAGGAGGAGCAGGCCCAGATAACGTCCCAGGTGACGGGCCAGATCGGATGGCGGCGGGAAGGCATCAAGTACCGCGGAACGAGCTGTTCCTCGACGTGCTCGAGTACGTGAATCTGCTGATGAGCCCGCAGGGCCAGGTGCTGTCCGCGCACGTCGCCGGTAAGGTCGTGATGAAGTCGTACCTGTCCGGCATGCCGGAGTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7288#2 ------------------------------------------------------------ consensus_7288#3 ------------------------------------------------------------ consensus_7288#0 CCGGTCCAGGAA---GGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTG 57 consensus_7288#1 -CGACCCACGCGTCCGGGGGAAAGAAAAAGATCGTACAGAAATTTTTCTCCTCCGCGGTG 59 consensus_7288#2 -----------------CGACCCACGCGTCCGAGCGGGCAAATATCTGGCTGGCGGCCGT 43 consensus_7288#3 ------------------------------------------------------------ consensus_7288#0 ATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGT 117 consensus_7288#1 ATAATGTTTTTGCGATTAATTACGCCCAAGAAAATGGATTAATTTCGGGTGCGCAAGTGT 119 consensus_7288#2 AACGAAGCACAATGTGAACGCCGCCATGGTGTTTGAGTTTCTGCTGAAGATAATCG---A 100 consensus_7288#3 ------------------------------------------------------------ consensus_7288#0 GTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCG 177 consensus_7288#1 GTTTGTGCGGTTGGTGCGCGGAAAAGTGTGTCTTCGGAGCCAAGTGTGTGTGTGTGCGCG 179 consensus_7288#2 CGTGATGCAGTCGTACTTT-GGCAAGATTTCGGAGGAAAACATCAAGAACAACTTCGTGC 159 consensus_7288#3 ------GCAGAATCGCCCG-AG--GTATTTCGGAGGAAAACATCAAGAACAACTTCGTGC 51 consensus_7288#0 CGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGG 237 consensus_7288#1 CGGGTTGCCTTCCCATCCGGAGAGAGGTTTGATAAGCAGGCACACGGGCTGTGTGTGTGG 239 ** * *** * * * ** * * *** consensus_7288#2 T----------GATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAA--A 207 consensus_7288#3 T----------GATCTACGAGCTGTTGGATGAAATTCTGGACTTTGGCTATCCGCAA--A 99 consensus_7288#0 GACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTG 297 consensus_7288#1 GACAGGAAGGGGCGCAACCATCAGTACAATAAAATCAGCCACTTTATCCGGTGGTTTCTG 299 * * ** * * ** ** **** ***** * * consensus_7288#2 ACTCG---GACACGGGTGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGA 264 consensus_7288#3 ACTCG---GACACGGGCGTGCTGAAGACGTTCATCACGCAGCAGGGCATCAAGACGGCGA 156 consensus_7288#0 TCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGA 357 consensus_7288#1 TCTCGTACGACGGAAGCGCGTCGGTTGATTGCGTAAAGAAGAGAAAGAGAGAGAAGGAGA 359 **** *** * * * * * * * * * ** * *** ** ** consensus_7288#2 CGAAG----GAGGAGCAGGCCCAGATAACGTCC--CAGGTGACGGGCCAGATCGGAT--G 316 consensus_7288#3 CGAAG----GAGGAGCAGGCCCAGATAACGTCC--CAGGTGACGGGCCAGATCGGAT--G 208 consensus_7288#0 GAGAGGAGCGAGAGAGAATTTAGGATAGATTCCATCGCCTGGCCGAGTGCATTGCATTTG 417 consensus_7288#1 GAG-----CGAGAGAGAATTTAGGATAGATTCCTTCGCCTGGCCGAGTGCATTGCATTTG 414 *** * **** *** * ** * * ** * ** * consensus_7288#2 GCGCCGGGAAGGCATCAAGTACCGCCGGAACGAGCTGTTCCTGGACGTGCTCG----AGT 372 consensus_7288#3 GCGGCGGGAAGGCATCAAGTACCGC-GGAACGAGCTGTTCCTCGACGTGCTCG----AGT 263 consensus_7288#0 GGACCAACAATATACTGA-TAGCGCGGCACCGACCGACGGCAACAGGCACCCATCATGAT 476 consensus_7288#1 GGACCAACAATATACTGA-TAGCGCGGCACCGACCGACGGCAGCAGGCACCCATCATGAT 473 * * ** * * ** *** * * *** * * * * * * * consensus_7288#2 ACGTGAATC--TGCT--------------------------------------------- 385 consensus_7288#3 ACGTGAATC--TGCTGATGAGCCCGCAGGGCCAGGTGCTGTCCGCGCACGTCGCCGGTAA 321 consensus_7288#0 CGGTGGATTGTTCGTGTACAACCATAAGGGAGAGGTACTGATCTCCCGCGTGTACCGCGA 536 consensus_7288#1 CGGTGGATTGTTCGTGTACAACCATAAGGGAGAAGTGCTGATCTCCCGCGTGTACCGCGA 533 *** ** * * consensus_7288#2 ------------------------------------------------------------ consensus_7288#3 GGTCGT--GATGAAGTCGTACCTGTCCGGCATGCCGGAGTGCA----------------- 362 consensus_7288#0 TGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCTCGGCAGCA 596 consensus_7288#1 TGACATTGGCCGGAATGCGGTGGATGCGTTCCGCGTGAATGTGATCCACGCCCGGCAGCA 593 consensus_7288#2 ------------------------------------------------------------ consensus_7288#3 ------------------------------------------------------------ consensus_7288#0 AGTCCGGTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAA 656 consensus_7288#1 GGTCCGTTCGCCGGTAACGAACATCGCCCGTACGAGCTTTTTCCATATCAAGCGGGCAAA 653 consensus_7288#2 ------------------------------------------------------- consensus_7288#3 ------------------------------------------------------- consensus_7288#0 TATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCATGGTGTTTGAG 711 consensus_7288#1 TATCTGGCTGGCGGCCGTAACGAAGCAGAATGTGAACGCCGCCAT---------- 698 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||