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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1385 fasta sequence
[CCGCCCAGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAAAATATGAAAGATATGTAAAAAAGAAAGAAAGCAACACGGATAATGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT-AAAAAAACATTCCTTTCTCTATCTATCTC--------TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATTGAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGATGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGTGCGTACGTGGAGGGTAAAGAAATAGTTTTTAATTTACGGAACAGATTTCATCAACAAAGATTAAGTGACGGGGGCAGAGGAATGAGTATGCAATGGTTTAGTTCTCCCACTACTGTGGTTAGCGAATTATAATCTCTCTCCCTGTAATGCCTATCACATTTACCACTTTGAATCTCGAATTTCGGTTTTAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATCCAACGTCTTTTTAGTTGTGTTTGTGATTGTGACTGGTGTTGTCGTATTGTGTTGTGTTGGTTTACTTATTTAAGACCTGTTTAAGAAACAATTGAACGAGAAGTGTGTGTGTGCGTGTTTGAGAGAGTGTTGTGTGATTAGCTAATCGGGAAGGATCTAGTTAGAGCGAACGTCCTTGTTTTTACGTTGTTTTTTTATCTTCTCCACGTTACTTACGTTCCGGCTCGTCTCACTTACGGCAAGTGTTTAACAGAATCGGCTAGACTAACTTCTTGCAATCATGATAACCTAAGAAATACTACATACAACAATATCGTTCTACACTGGACAGGGTTAAATAAGGGGTGGGGGAGAGTGGTGCGATAGTACCAAAGGATAAAGTGAGTGAGTGATGCAAAGAAGTGGAAAAGGAGCAAAAGTGAAGGAAATACAACAAAACACACAAACGTACATAT]
[+] EMBL BM655858 [CCGCCCAGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAAAATATGAAAGATATGTAAAAAAGAAAGAAAGCAACAGAGATAATGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTGTGGATGGTGGAGAGCGAGATGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTTCCAAACAAAAACCTCCTTATCACCTCTAAAAAAAACATTCCTTTCTCTATCTATCTCTCTCTCTGTCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAA ]
[+] EMBL BM642080 [ cCGGATAATGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT AAAAAAACATTCCTTTCTCTATCTATCTC TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACCGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATTGAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGATGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGTGCGTACGTGGAGGGTAAAGAAATAGTTTTTAATTTACGGAACAGATTTCATCAACAAAGATTAAGTGACGGGGGCAGAGGAATGAGTATGCAATGGTTTAG ]
[+] EMBL BM651912 [ ccGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT AAAAAAACATTCCTTTCTCTATCTATCTC TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATTGAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGATGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGT ]
[+] EMBL BM654038 [ cgcgtccgGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT AAAAAAACATTCCTTTCTCTATCTATCTC TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATG ]
[+] EMBL BM653756 [ ccgCAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT AAAAAAACATTCCTTTCTCTATCTATCTC TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATTGAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGATGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGT ]
[+] EMBL BM598057 [ ccgCAAAGATTAAGTGAC GGGGCAGAGGAATGAGTATGCAATGGTTTAGTTCTCCCACTACTGTGGTTAGCGAATTATAATCTCTCTCCCTGTAATGCCTATCACATTTACCACTTTGAATCTCGAATTTCGGTTTTAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATCCAACGTCTTTTTAGTTGTGTTTGTGATTGTGACTGGTGTTGTCGTATTGTGTTGTGTTGGTTTACTTATTTAAGACCTGTTTAAGAAACAATTGAACGAGAAGTGTGTGTGTGCGTGTTTGAGAGAGTGTTGTGTGATTAGCTAATCGGGAAGGATCTAGTTAGAGCGAACGTCCTTGTTTTTACGTTGTTTTTTTATCTTCTCCACGTTACTTACGTTCCGGCTCGTCTCACTTACGGCAAGTGTTTAACAGAATCGGCTAGACTAACTTCTTGCAATCATGATAACCTAAGAAATACTACATACAACAATATCGTTCTACACTGGACAGGGTTAAATAAGGGGTGGGGGAGAGTGGTGCGATAGTACCAAAGGATAAAGTGAGTGAGTGATGCAAAGAAGTGGAAAAGGAGCAAAAGTGAAGGAAATACAACAAAACACACAAACGTACATAT]
consensusID : consensus_7292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 160 fasta sequence
[GACCCACGCGTCCGCCCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGTATTTATAATCAGTAATGTGGAATTATTTAACTTTTATTTCCTATACATATGAATATATATATATTTTAGCAATAAACACTGAAAACGGAAGAAAACTGACAAAACTG]
[+] EMBL BM580985 [GACCCACGCGTCCGCCCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGTATTTATAATCAGTAATGTGGAATTATTTAACTTTTATTTCCTATACATATGAATATATATATATTTTAGCAATAAACACTGAAAACGGAAGAAAACTGACAAAACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7292#0 CCGCCCA-GCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGGATTTTAAGGATATAATAG 59
consensus_7292#1 -GACCCACGCGTCCGCCCACGCGTCCGCGGACGCGTGGGCGGACGC-GTGGGTGTATTTA 58
**** ******** ****** ************* *** ** * ** *
consensus_7292#0 CAAACGTATAAACAAAAAAAAATATGAAAGATATGTAAAAAAGAAAGAAAGCAACACGGA 119
consensus_7292#1 TAATC--AGTAATGTGGAATTATTTAACTTTTATTTCCTATACATATGAATATATATATA 116
** * * ** ** ** * * *** * * * * * ** * * *
consensus_7292#0 TAATGACAATACA-ACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAG 178
consensus_7292#1 TTTTAGCAATAAACACTGAAAACGGAAGAAAACT---GACAAAACTG------------- 160
* * ***** * ** ******* * *** *******
consensus_7292#0 GAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAA 238
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 AACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATG 298
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 GTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAA 358
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 TTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCTAAAAAAACATTCCTTTCTCTA 418
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 TCTATCTCTCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGT 478
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 TGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATT 538
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 GAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGA 598
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 TGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGTGCGTACGT 658
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 GGAGGGTAAAGAAATAGTTTTTAATTTACGGAACAGATTTCATCAACAAAGATTAAGTGA 718
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 CGGGGGCAGAGGAATGAGTATGCAATGGTTTAGTTCTCCCACTACTGTGGTTAGCGAATT 778
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 ATAATCTCTCTCCCTGTAATGCCTATCACATTTACCACTTTGAATCTCGAATTTCGGTTT 838
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 TAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACA 898
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 CACACACACACACACACACACACACACACATCCAACGTCTTTTTAGTTGTGTTTGTGATT 958
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 GTGACTGGTGTTGTCGTATTGTGTTGTGTTGGTTTACTTATTTAAGACCTGTTTAAGAAA 1018
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 CAATTGAACGAGAAGTGTGTGTGTGCGTGTTTGAGAGAGTGTTGTGTGATTAGCTAATCG 1078
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 GGAAGGATCTAGTTAGAGCGAACGTCCTTGTTTTTACGTTGTTTTTTTATCTTCTCCACG 1138
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 TTACTTACGTTCCGGCTCGTCTCACTTACGGCAAGTGTTTAACAGAATCGGCTAGACTAA 1198
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 CTTCTTGCAATCATGATAACCTAAGAAATACTACATACAACAATATCGTTCTACACTGGA 1258
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 CAGGGTTAAATAAGGGGTGGGGGAGAGTGGTGCGATAGTACCAAAGGATAAAGTGAGTGA 1318
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 GTGATGCAAAGAAGTGGAAAAGGAGCAAAAGTGAAGGAAATACAACAAAACACACAAACG 1378
consensus_7292#1 ------------------------------------------------------------
consensus_7292#0 TACATAT 1385
consensus_7292#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||