These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 880 fasta sequence [TGCCTTTTAGGACGGTTGGAGAGTTAAGGGTTTTTTTCTGAGAGATTGTCGGCACATTTTGCAAAGCCCGACCAATAGTTACCAGTGAGCTGTGAAGCGTGAATGGGTCTGCTTTCCAAACATGATGGCAATCACTGTCGCCACTTCCGAGTGTGTTTTTGTCTTCCTTTTGTTCCTACAGCATCTTCCGGCTGGCTCCGGCAACTTTACGAACACACTGTGGGCGCATCAGTGTGATCCCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAACCACAACCATTCGACACTGGTAGCGCCCGGAACGGTACGCAAAGTGAGGCTTGCCTATCCGAGGGATAAAATTCTTCTGCGCGACAATATCGTTGCGTACGATGCCGTGCTTCACGAGATCCTAAAGCGCCCACGAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACCTACCGCTCGACCTCGAGTATGC-GGACTTTAGTAGCAATCTGATTGCAACTGTGTCCGCACCGGAAGTGAACGGTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATAGTTTGCGTACG-CTGGTGCATCTCGAAACGCTACTGCTTGCCCACAACCGCATCGTTGTGGTGGACGGTTCGGTGTTGAAGGGTTTCCCCAAACTGTCCGGCCTTCATCTGGGTGCCAATCAGCTGGAGGAGTTTCCGTATGCCGATCTGCCCGCCACGCTCGAGTGGCTCGTTTTGTGCCGGAATGATTTTGCTAATATACTGGAGTTTACGGGCATGTATGCGCCTGCGCTGAAGGTGTTGAACCTGCAGGACAATTTCCTGAACAGCTTGAACATTGAC] [+] EMBL BX604328 [TGCCTTTTAGGACGGTTGGAGAGTTAAGGGTTTTTTTCTGAGAGATTGTCGGCACATTTTGCAAAGCCCGACCAATAGTTACCAGTGAGCTGTGAAGCGTGAATGGGTCTGCTTTCTAAACATGATGGCAATCACTGTCGCCACTTCCGAGTGCGTTCTTGTCTTCCTTTTGTTCCTACAGCATCTTCCGGCTGGTTCCGGCAACTTTACGAACACACTGTGGGCGCATCAGTGTGATCCCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAACCACAACCATTCGATACTGGTAGCGCCCGGAACGGTACGCAAAGTGAGGCTTGCCTATCCGAGGGATAAAATTCTTCTGCGCGACAATATCGTTGCGTACGATGCCGTGCTTCACGAGATCCTAAAGCGCCCACGAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACCTACCGCTCGACCTCGAGTATGC GGACTTTAGTAGCAATCTGATTGTAACTGTGTCCGCACCGGAAGTGAACGGTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATAGTTTGCGTACG CTGGTGCATCTCGAAACGCTACTGCTTGCCCACAACCGCATCGTTGTGGTG ] [+] EMBL AGA285453 [ aGCACATTTTGCAAAGCCCGAGC AGTTACCAGCGAGCTGTGAAGCGTGAATGGGTCTGCTTTCCAAACATGATGGCAATCACTGTCGCCACTTCCGAATGTGTTTTTGTCTTCCTTTTGTTCCTACAGCATCTTCCCGCTGGCTCCGGCAACTTTACGAACACACTGTGGGCGCATCAGTGTGATCCCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAACCACAACCATTCGACACTGGTAGCGCCCGGAACGGTACGCAAAGTGA ] [+] EMBL BM632229 [ ccgGCTTTCCAAACATGATTGCAATCACTGTCGCCACTTCCGAGTGTGTTTTTGTCTTCCTTTTGTTCCTACAGCATCTTCCGGCTGGCTCCGGCAACTTTACGAACACACTGTGGGCGCATCAGTGTGATCCCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAACCACAACCATTCGACACTGGTAGCGCCCGGAACGGTACGCAAAGTGAGGCTTGCCTATCCGAGGGATAAAATTCTTCTGCGCGACAATATCGTTGCGTACGATGCCGTGCTTCACGAGATCCTAAAGCGCCCACGAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACCTACCGCTCGACCTCGAGTATGC GGACTTTAGTAGCAATCTTATTGCAACTGTGTCCGCACCGGAAGTGAACGGTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATAGTTTGCGTACG CTGGTGCATCTCGAAACGCTACTGCTTGCCCAC ] [+] EMBL AGA282607 [ ACTTTACGAACACACTGTGGGCGCATCAGTGTGATCCCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAACCACAACCATTCGACACTGGTAGCGCCCGGAACGGTACGCAAAGTGAGGCTTGCCTATCCGAGGGATAAAATTCTTCTGCGCGACAATATCGTTGCGTACGATGCCGTGCTTCACGAGATCCTAAAGCGCCCACGAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACCTACCGCTCGACCTCGAGTATGC GGACTTTAGTAGCAATCTGATTGCAACTGTGTCCGCACCGGAAGTGAACGGTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATAGTTTGCGTACGCCTGGTGCATCTCGAAACGCTACTGCTTGCCCACAACCGCATCGTTGTGGTGGACG ] [-] EMBL AGA284157 [ GAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACTTACCGCTCGACCTCGAGTATGCGGGACTTTAGTAGCAATCTGATTGCAACTGTGTCCGCACCGGAAGTGAACGGTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATAGTTTGCGTACG CTGGTGCATCTCGAAACGCTACTGCTTGCCCACAACCGCATCGTTGTGGTGGACGGTTCGGTGTTGAAGGGTTTCCCCAAACTGTCCGGCCTTCATCTGGGTGCCAATCAGCTGGAGGAGTTTCCGTATGCCGATCTGCCCGCCACGCTCGAGTGGCTCGTTTTGTGCCGGAATGATTTTGCTAATATACTGGAGTTTACGGGCATGTATGCGCCTGCGCTGAAGGTGTTGAACCTGCAGGACAATTTCCTGAACAGCTTGAACATTGAC] [-] EMBL AGA280977 [ GGACTTTAGTAGCAATCTGATTGCAACTGTGTCCGCACCGGAAGTGAACGGTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATAGTTTGCGTACG CTGGTGCATCTCGAAACGCTACTGCTTGCCCACAACCGCATCGTTGTGGTGGACGGTTCGGTGTTGAAGGGTTTCCCCAAACTGTCCGGCCTTCATCTGGGTGCCAATCAGCTGGAGGAGTTTCCGTATGCCGATCTGCCCGCCACGCTCGAGTGGCTCGTTTTGTGCCGGAATGATTTTGCTAATATACTGGAGTTTACGGGCATGTATGCGCCTGCGCTGAAGGTGTTGAACCTGCAGGACAATTTCCTGAACAGCTTGAACATTGAC] consensusID : consensus_7295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [ATCCCCCGAGGTTTGTGAAGCGTGAATGGGTCTGCTTTCCAAACATGATGTGCAATCACTGTCGCCACTTCCGAATGTGTTTTTGTCTTCCTTTTGTTCCTACAGCATCTTCCCGCTGGCTCCGGCAACTTTACGAACACACTGTGGGCGCATCAGTGTGATCCCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAACACAACCATTCGACACTGGTAGCGCCCGGAACGGTACGCAAAGTGAGGCTTGCCTATCCGAGGGATAAAATTCTTCTGCGCGACAATATCGTTGCGTACGATGCCGTGCTTCACGAGATCCTAAAGCGCCCACGAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACCTACCGCTCGACCTCGAGTATGCGGACTTTAGTAGCAATCTGATTGCAACTGTGTCCGCACCGGAAGTGAACGGTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATAGTTTGCGTACGCTGGTGCATCTCGAAACGCTACTGNTTGGCCCACAACCGCATCGTTGTGGTGGA] [+] EMBL AL697435 [ATCCCCCGAGGTTTGTGAAGCGTGAATGGGTCTGCTTTCCAAACATGATGTGCAATCACTGTCGCCACTTCCGAATGTGTTTTTGTCTTCCTTTTGTTCCTACAGCATCTTCCCGCTGGCTCCGGCAACTTTACGAACACACTGTGGGCGCATCAGTGTGATCCCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAACACAACCATTCGACACTGGTAGCGCCCGGAACGGTACGCAAAGTGAGGCTTGCCTATCCGAGGGATAAAATTCTTCTGCGCGACAATATCGTTGCGTACGATGCCGTGCTTCACGAGATCCTAAAGCGCCCACGAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACCTACCGCTCGACCTCGAGTATGCGGACTTTAGTAGCAATCTGATTGCAACTGTGTCCGCACCGGAAGTGAACGGTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATAGTTTGCGTACGCTGGTGCATCTCGAAACGCTACTGNTTGGCCCACAACCGCATCGTTGTGGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7295#0 TGCCTTTTAGGACGGTTGGAGAGTTAAGGGTTTTTTTCTGAGAGATTGTCGGCACATTTT 60 consensus_7295#1 ------------------------------------------------------------ consensus_7295#0 GCAAAGCCCGACCAATAGTTACCAGTGAGCTGTGAAGCGTGAATGGGTCTGCTTTCCAAA 120 consensus_7295#1 -----------------ATCCCCCGAGGTTTGTGAAGCGTGAATGGGTCTGCTTTCCAAA 43 * ** * * ****************************** consensus_7295#0 CATGATG-GCAATCACTGTCGCCACTTCCGAGTGTGTTTTTGTCTTCCTTTTGTTCCTAC 179 consensus_7295#1 CATGATGTGCAATCACTGTCGCCACTTCCGAATGTGTTTTTGTCTTCCTTTTGTTCCTAC 103 ******* *********************** **************************** consensus_7295#0 AGCATCTTCCGGCTGGCTCCGGCAACTTTACGAACACACTGTGGGCGCATCAGTGTGATC 239 consensus_7295#1 AGCATCTTCCCGCTGGCTCCGGCAACTTTACGAACACACTGTGGGCGCATCAGTGTGATC 163 ********** ************************************************* consensus_7295#0 CCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAACCACAACC 299 consensus_7295#1 CCGGGTCGGAAATATTTGCCTGCACCGTACCCAACTTTTTCTACAAACCAAAC-ACAACC 222 ***************************************************** ****** consensus_7295#0 ATTCGACACTGGTAGCGCCCGGAACGGTACGCAAAGTGAGGCTTGCCTATCCGAGGGATA 359 consensus_7295#1 ATTCGACACTGGTAGCGCCCGGAACGGTACGCAAAGTGAGGCTTGCCTATCCGAGGGATA 282 ************************************************************ consensus_7295#0 AAATTCTTCTGCGCGACAATATCGTTGCGTACGATGCCGTGCTTCACGAGATCCTAAAGC 419 consensus_7295#1 AAATTCTTCTGCGCGACAATATCGTTGCGTACGATGCCGTGCTTCACGAGATCCTAAAGC 342 ************************************************************ consensus_7295#0 GCCCACGAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACCTACCGCTCGACC 479 consensus_7295#1 GCCCACGAGCAGTTCAAATCGAAAATGTCATCATCAAGACAGTAGACCTACCGCTCGACC 402 ************************************************************ consensus_7295#0 TCGAGTATGCGGACTTTAGTAGCAATCTGATTGCAACTGTGTCCGCACCGGAAGTGAACG 539 consensus_7295#1 TCGAGTATGCGGACTTTAGTAGCAATCTGATTGCAACTGTGTCCGCACCGGAAGTGAACG 462 ************************************************************ consensus_7295#0 GTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATA 599 consensus_7295#1 GTTCCGAGTATGCGCTACGCTATCTGGACCTGCAGTACAATCGGTTGACAGCGATCGATA 522 ************************************************************ consensus_7295#0 GTTTGCGTACGCTGGTGCATCTCGAAACGCTACTGCTTG-CCCACAACCGCATCGTTGTG 658 consensus_7295#1 GTTTGCGTACGCTGGTGCATCTCGAAACGCTACTGNTTGGCCCACAACCGCATCGTTGTG 582 *********************************** *** ******************** consensus_7295#0 GTGGACGGTTCGGTGTTGAAGGGTTTCCCCAAACTGTCCGGCCTTCATCTGGGTGCCAAT 718 consensus_7295#1 GTGGA------------------------------------------------------- 587 ***** consensus_7295#0 CAGCTGGAGGAGTTTCCGTATGCCGATCTGCCCGCCACGCTCGAGTGGCTCGTTTTGTGC 778 consensus_7295#1 ------------------------------------------------------------ consensus_7295#0 CGGAATGATTTTGCTAATATACTGGAGTTTACGGGCATGTATGCGCCTGCGCTGAAGGTG 838 consensus_7295#1 ------------------------------------------------------------ consensus_7295#0 TTGAACCTGCAGGACAATTTCCTGAACAGCTTGAACATTGAC 880 consensus_7295#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||