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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 618 fasta sequence
[AGAGTCACACCGTTTGTGGAAGCTCGCTGTGTGTGTATGTTTTTTTGAGTGGTATAGTGAAGGATGCCGTACACCTTGGTAGAAACGACTACTCCCACCGGCGGCAAAGAGCTGCTAGCTGCACCGGCCGCCTGGACTCCAAAAGAAGGCTGACGGCACGGCTTATCTGTGCTGGCCGTTTGCTACAAGCATACGGAAGCTGAATACATTGTTCCAAGACGAGTACAGCATTCCGTCGGAGGTGTGGGAAAGCGCTTGAGTGTGAAATTTTGTGCCGCAACATTCCTTCGCTCTCGTCGGCGGACAAGATGATCGAAACGATGGAAAGCAGCTGGCTGAACGAGCCGAAACCGGCAGCACGAGTAACGGTACAACGATCAAACGATCCTCTTGCGAACCGCGCTGAGCAATGGCGGTGTGCAGAAGCTGCTGTCTAACCCCACCGCCCAGCCGGATCACGTGTCAGTGGAGAATTTCATGCGCAAAAAGCTTCACAACTCGACCACCAGGATAAAGGTGAAGGGTGTGCGCAGGAGTGTGCCACATAGCGGTCGTAAGCGCGCTAAATTTTTTTTTTTTTTCGAGATCATCAGAATTATTCCGAAACAGAAAAAGTGG]
[+] EMBL CNS09JI4 [AGAGTCACACCGTTTGTGGAAGCTCGCTGTGTGTGTATGTTTTTTTGAGTGGTATAGTGAAGGATGCCGTACACCTTGGTAGAAACGACTACTCCCACCGGCGGCAAAGAGCTGCTAGCTGCACCGGCCGCCTGGACTCCAAAAGAAGGCTGACGGCACGGCTTATCTGTGCTGGCCGTTTGCTACAAGCATACGGAAGCTGAATACATTGTTCCAAGACGAGTACAGCATTCCGTCGGAGGTGTGGGAAAGCGCTTGAGTGTGAA ]
[+] EMBL CNS08HFR [ CTCCCACCGGCGGCAAAGAGCTGCTAGCTGCACCGGCCGCCTGGA TCCAAAAGAAGGCTGACGGAACCGCATATCTGTGCTGGCCGTTCGCTAGAAGCATACGGAAGCTGAATACATTGTTCCAAGACGAGTACAGCATTCCGTCGGAGGTGTGGGAAAG GCTTGAGTGTGAAATTTTGTGCCGCAACATTCCTTCGCTCTCGTCGGCGGACAAGATGATCGAAACGATGGAAAGCAGCTGGCTGAACGAGCCGAAACCGGCAGCACGAGTAACGGTACAACGATCAAACGATCCTCTTGCGAACCGCGCTGAGCAATGGCGGTGTGCAGAAGCTGCTGTCTAACCCCACCGCCCAGCCGGATCACGTGTCAGTGGAGAATTTCATGCGCAAAAAGCTTCACAACTCGACCACCAGGATAAAGGTGAAGGGTGTGCGCAGGAGTGTGCCACATAGCGGTCGTAAGCGCGCTAAATTTTTTTTTTTTTTCGAGATCATCAGAATTATTCCGAAACAGAAAAAGTGG]
[+] EMBL CNS08P43 [ aTGTGAAATTTTGTGCCGCAACATTCCTTCGCTCTCGTCGGCGGACAAGATGATCGAAACGATGGAAAGCAGCTGGCTGAACGAGCCGAAACCGGCAGCACGAGTAACGGTACAACGATCAAACGATCCTCTTGCGAACCG GCTGAGCAATGGCGGTGTGCAGA ]
consensusID : consensus_7297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence
[TAGAAGAGTTTGAGAAGCGTCTGGAGGACGATGACTATCGCACCCAGGTGTGCCAGTGGATCGACGCGAGCGTGGGACACATGCGGCAGTCCGAGCATCGGATGCACACGTTGTTGGACCTCATCATCGATCGGAAGCTGTTCGCTGGCTTCAGCTGGACCGGCGGCGGAAAGAACAAACGGGCGCTGAACACGCACAAGAACATACTGAACTTGTTCGAGTACGCCGGTACCACCTCCGTGTACCGGGCGGATCACGTGTCAGTGGGGAATTTCATGCGCAAAAAGCTTCAGAACTCGACCAGCAGGATAAAGGCGAAGGGTGTGCGGAGGAGTGTGCCACTTAGCCGTCGTAAGCGGCTAAACCGAGTGGGAGACGATATCATCAGAATTATTCCGAAACAGATTAAGTTGACATCATCTACTGATGCGCAAAGTCCTGCAGCGGTGGCGGATGCGACTCAAGGGCAATCATCACCCTCGTCATCGATACTGATGGCTGTGAGTGTACCGGCAAAACCGATCAGATCGGGAACGATAGTAGTGAAGCAAGATGCCACCATGTTCATAGACGGTGTGAATGAATTTGAGGAAATGTTGGACATTAGACGATT]
[+] EMBL BX620842 [TAGAAGAGTTTGAGAAGCGTCTGGAGGACGATGACTATCGCACCCAGGTGTGCCAGTGGATCGACGCGAGCGTGGGACACATGCGGCAGTCCGAGCATCGGATGCACACGTTGTTGGACCTCATCATCGATCGGAAGCTGTTCGCTGGCTTCAGCTGGACCGGCGGCGGAAAGAACAAACGGGCGCTGAACACGCACAAGAACATACTGAACTTGTTCGAGTACGCCGGTACCACCTCCGTGTACCGGGCGGATCACGTGTCAGTGGGGAATTTCATGCGCAAAAAGCTTCAGAACTCGACCAGCAGGATAAAGGCGAAGGGTGTGCGGAGGAGTGTGCCACTTAGCCGTCGTAAGCGGCTAAACCGAGTGGGAGACGATATCATCAGAATTATTCCGAAACAGATTAAGTTGACATCATCTACTGATGCGCAAAGTCCTGCAGCGGTGGCGGATGCGACTCAAGGGCAATCATCACCCTCGTCATCGATACTGATGGCTGTGAGTGTACCGGCAAAACCGATCAGATCGGGAACGATAGTAGTGAAGCAAGATGCCACCATGTTCATAGACGGTGTGAATGAATTTGAGGAAATGTTGGACATTAGACGATT]
[+] EMBL BX625603 [ ACTATCGCACCCAGGTGTGCCAGTGGATCGACGCGAGCGTGGGACACATGCGGCAGTCCGAGCATCGGATGCACACGTTATTGGACCTCATCATCGATCGGAAGCTGTTCGCTGGCTTCAGCTGGACCGGCGGCGGAAAGAACAAACGGGCGCTGAACGTGCACAAGAACATACTGAACTTGTTCGAGTACGCCGGTACCACCTCCGTGTACCGGGCGGATCACGTGTCAGTGGGGAATTTCATGCGCAAAAAGCTTCAGAACTCGACCAGCAGGATAAAGGCGAAGGGTGTGCGGAGGAGTGTGCCACTTAGCCGTCGTAAGCGGCTAAACCGAGTGGGAGACGAGATCATTAGAATTATTCCGAAACAGATTAAGTTGACATCATCTACTGATGCGCAAAGTCCTGCAGCAGTGGCGGATGCGACTCAAGGGCAATCATCACCCTCGTCATCGATACTGATGGCTGTGAGTGTACCGGCAAAACCGATCAGATCGGAAACGATAGTAGTGAAGCAAGATGCCACCATGTTCATAGACNGTGTGAATGAATTTGAGGAAATTTTGGACATTAGACGATT]
consensusID : consensus_7297#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence
[CAACTCGCCCCCCCGTTTTTATGGTGAAGGGTGTGCGCAGGAGTGTGCCACATAAAAAAAAAAAACGGCTAAACCGAGTGGGAGACGAGATCATCAGAATTATTCCGAAACAGATTAAGTTGACATCATCTACTGATGCGCAAAGTCCTGCAGCGGTGGCGGATGCGACTCAAGGGCAATCATCACCCTCTTTCATCGATACCGATGGCTGTGAGTGTACCGGCAAAACCGATCAGATCGGAAACGATAGTAGTGAAGCAAGATGCTACCATGTTCATAGACGGTGTGGATGAGTTTGAGGAAATGTTGGACATTAGACGATTGCAGAAGTAAGCCGCACACGTGTGGTTTTTGAGAGAGGCTTACGGATGTGGAAGCAACAAGAAACAAAATTTAATCAGCCAAAAATAATTCATACTGTACGTTTACTTTGTAAAGTACAATGAATATCGCAAGGAATTGTTGTGCAACTTTAAGCATGGAATGTTTAAACTGTAACGTTACAGTTAATTAGGTTTACTCGGTAGTAGTGTTTAAAAACGACAATTTAATTCAA]
[-] EMBL CNS08HFS [CAACTCGCCCCCCCGTTTTTATGGTGAAGGGTGTGCGCAGGAGTGTGCCACATAAAAAAAAAAAACGGCTAAACCGAGTGGGAGACGAGATCATCAGAATTATTCCGAAACAGATTAAGTTGACATCATCTACTGATGCGCAAAGTCCTGCAGCGGTGGCGGATGCGACTCAAGGGCAATCATCACCCTCTTTCATCGATACCGATGGCTGTGAGTGTACCGGCAAAACCGATCAGATCGGAAACGATAGTAGTGAAGCAAGATGCTACCATGTTCATAGACGGTGTGGATGAGTTTGAGGAAATGTTGGACATTAGACGATTGCAGAAGTAAGCCGCACACGTGTGGTTTTTGAGAGAGGCTTACGGATGTGGAAGCAACAAGAAACAAAATTTAATCAGCCAAAAATAATTCATACTGTACGTTTACTTTGTAAAGTACAATGAATATCGCAAGGAATTGTTGTGCAACTTTAAGCATGGAATGTTTAAACTGTAACGTTACAGTTAATTAGGTTTACTCGGTAGTAGTGTTTAAAAACGACAATTTAATTC ]
[-] EMBL CNS08P44 [ TCGCAAGGAATTGTTGTGCAACTTTAAGCATGGAATGTTTAAACTGTAACGTTACAGTTAATTAGGTTTACTCGGTAGTAGTGTTTAAAAACGAC ATTTAATTCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7297#1 TAGAAGAGTTTGAGAAGCGTCTGGAGGACGATGACTATCGCACCCAGGTGTGCCAGTGGA 60
consensus_7297#2 ------------------------------------------------------------
consensus_7297#0 ------------AGAGTCACACCGTTTGTGGAAGCTCGC-TGTGTGTGTATGTTTTTTTG 47
consensus_7297#1 TCGACGCGAGCGTGGGACACATGCGGCAGTCCGAGCATCGGATGCACACGTTGTTGGACC 120
consensus_7297#2 ------------------------------------------------------------
consensus_7297#0 AGTGGTATAGTGAAGGATGCCGTACACCTTGGTAGAAACGACTACTCCCACCGGCGGCAA 107
consensus_7297#1 TCATCATCGATCGGAAGCTGTTCGCTGGCTTCAGCTGGACCGGCGGCGGAAAGAACAAAC 180
consensus_7297#2 ------------------------------------------------------------
consensus_7297#0 AGAGCTGCTAGCTGCACCGGCCGCCTGGACTCCAAAAGAAGGCTGACGGCACGGCTTATC 167
consensus_7297#1 ------GGGCGCTGAACACGCACAAGAACATACTGAAC---TTGTTCGAGTACGCCGGTA 231
consensus_7297#2 ------------------------------------------------------------
consensus_7297#0 TGTGCTGGCCGTTTGCTACAAGCATACGGAAGCTGAATACATTGTTCCAAGACGAGTACA 227
consensus_7297#1 CCACCTCCGTGTACCGGGCGGATCACGTGTCAGTGGGGAATTTCATGCGCAAAAAGCTTC 291
consensus_7297#2 ------------------------------------------------------------
consensus_7297#0 GCATTCCGTCGGAGGTGTGGGAAAGCGCTTGAGTGTGAAATTTTGTGCCGCAACATTCCT 287
consensus_7297#1 AGAACTCGACCAGCAGGATAAA-GGCGAAGGGTGTGCGGAGGAGTGTGCCACTT-AGCCG 349
consensus_7297#2 -CAACTCGCCCCCCCGTTTTTATGGTGAAGGGTGTGCGCAGGAGTGTGCCACAT-AAAAA 58
consensus_7297#0 TCGCTCTCGTCGGCGGACAAGATGATCGAAACGATGGAAAGCAGCTGGCTGAACGAGCCG 347
* * * * * * ** ** ** ** *
consensus_7297#1 TCGTAAGCGGCTAAACCGAGTGGGAGACGATATCATCAGAATTATTCCGAAACAGATTAA 409
consensus_7297#2 AAAAAAACGGCTAAACCGAGTGGGAGACGAGATCATCAGAATTATTCCGAAACAGATTAA 118
consensus_7297#0 AAACCGGCAGCACGAGTAACGGTACAACGAT-CAAACGATCCTCTTGCGAACCGCGCTGA 406
* ** * * * **** * * * ** **** * * *
consensus_7297#1 GTTGACATCATCTACTGATGCGCAAAGTCCTGCAGCGGTGGCGGATGCGACTCAAGGGCA 469
consensus_7297#2 GTTGACATCATCTACTGATGCGCAAAGTCCTGCAGCGGTGGCGGATGCGACTCAAGGGCA 178
consensus_7297#0 GCAATGGCGGTGTGCAGAAGC-TGCTGTCTAACCCCACCGCCCAGCCGGATCACGTGTCA 465
* * * * ** ** *** * * * * ** * **
consensus_7297#1 ATCATCACCCTCGT-CATCGATACTGATGGCTGTGAGTGTACCGGCAAAACCGATCAGAT 528
consensus_7297#2 ATCATCACCCTCTTTCATCGATACCGATGGCTGTGAGTGTACCGGCAAAACCGATCAGAT 238
consensus_7297#0 GTGGAGAATTTCATGCGCAAAAAGCT-TCACAACTCGACCACCAGGATAAAGGTGAAGGG 524
* * ** * * * * * * * *** * * ** * **
consensus_7297#1 CGGGAACGATAGTAGTGAAGCAAGATGCCACCATGTTCATAGACGGTGTGAATGAATTTG 588
consensus_7297#2 CGGAAACGATAGTAGTGAAGCAAGATGCTACCATGTTCATAGACGGTGTGGATGAGTTTG 298
consensus_7297#0 TGTGCGCAGGAGT-GTGCCACATAGCGGTCGTAAGCGCGCTAAATTTTTTTTTTTTTTCG 583
* * *** *** ** * * * * * * * * ** *
consensus_7297#1 AGGAAATGTTGGACATTAGACGATT----------------------------------- 613
consensus_7297#2 AGGAAATGTTGGACATTAGACGATTGCAGAAGTAAGCCGCACACGTGTGGTTTTTGAGAG 358
consensus_7297#0 AGATCATCAGAATTATTCCGAAACAGAAAAAGTGG------------------------- 618
** ** *** *
consensus_7297#1 ------------------------------------------------------------
consensus_7297#2 AGGCTTACGGATGTGGAAGCAACAAGAAACAAAATTTAATCAGCCAAAAATAATTCATAC 418
consensus_7297#0 ------------------------------------------------------------
consensus_7297#1 ------------------------------------------------------------
consensus_7297#2 TGTACGTTTACTTTGTAAAGTACAATGAATATCGCAAGGAATTGTTGTGCAACTTTAAGC 478
consensus_7297#0 ------------------------------------------------------------
consensus_7297#1 ------------------------------------------------------------
consensus_7297#2 ATGGAATGTTTAAACTGTAACGTTACAGTTAATTAGGTTTACTCGGTAGTAGTGTTTAAA 538
consensus_7297#0 ------------------------------------------------------------
consensus_7297#1 ------------------
consensus_7297#2 AACGACAATTTAATTCAA 556
consensus_7297#0 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||