These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7299#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 828 fasta sequence [TACAGCACAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAANGAGAGCTACGTGAAGAACGTGGGCGTGGGCATTACGGTCGATCTGAGGAAGATTAG] [+] EMBL BX603520 [TACAGCACAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGT ] [+] EMBL BX604071 [ CAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACTCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCG ] [+] EMBL BM622920 [ ccgGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATC ] [+] EMBL BX624464 [ CGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAANGAGAGCTACGTGAAGAACGTGGGCG ] [+] EMBL BX602175 [ TTGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCA ] [+] EMBL BX609084 [ GCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAAGGAGAGCTACGTGAAGAACGTGGGCGTGGGCATTACGGTCGATCTGAGGAAGATTAG] consensusID : consensus_7299#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [AGAATTCCGCACGAGTGGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGA] [+] EMBL BX467834 [AGAATTCCGCACGAGTGGTTGTTAGAAAATATGAGCTGTAAACAGATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAACAGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGTGTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACTGCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGCGGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTTCGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGTCCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAAACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATACGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGACGCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGAGTTTTTCCGCCTGATGACGCGCAACTTTCTCCGACGACGAGTGGCGCTACATACGCGGCCGCGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7299#0 TACAGCACAGCATGTTCCAGACCGAGCATATTGTTGTTAGAAAATATGAGCTGTAAACAG 60 consensus_7299#1 ---------------AGAATTCCGCACGAGTGGTTGTTAGAAAATATGAGCTGTAAACAG 45 * *** * * **************************** consensus_7299#0 ATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAAC 120 consensus_7299#1 ATAAATTAATAGTCGGACGAAGCGATGCTGTGCGAAGGCTGTGCGTAAGAATCTGTGAAC 105 ************************************************************ consensus_7299#0 AGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGT 180 consensus_7299#1 AGCGTTGTGCAACCGAGAATCTCCGGCCATTGGCGTGTCTCTGTGTGTGTGAGTGCGTGT 165 ************************************************************ consensus_7299#0 GTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACT 240 consensus_7299#1 GTTTGGTGAAACGTTCACTGCTGCTTGCTCTCTCGCAGTCCACACGCAAACCATGTCACT 225 ************************************************************ consensus_7299#0 GCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGC 300 consensus_7299#1 GCGGAATGGGGGTCACGTTCGCTGGGCATTTGACCTCGCGGGCTGGCGACCCAGTTTGGC 285 ************************************************************ consensus_7299#0 GGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTT 360 consensus_7299#1 GGATCTGCTGCTAGCGACGTCCTGCATACAGCCGGAGGAAAAGCTCACCCTGCAGCGGTT 345 ************************************************************ consensus_7299#0 CGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGT 420 consensus_7299#1 CGTGTTCCGGGACGATTTCAATGCGTCCCTCATCGGGCGGCTCATGATGCGCCGGTTCGT 405 ************************************************************ consensus_7299#0 CCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAA 480 consensus_7299#1 CCAGCTGGCCACCGATCTGGCGTACGACGAGATCAAGTTTGAGCGCGATTCGAAAGGCAA 465 ************************************************************ consensus_7299#0 ACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATA 540 consensus_7299#1 ACCGTTCCTGAAGAATGAGGGTGTGGCGGTCGACTTTAACGTTTCGCACCAGGGCCGATA 525 ************************************************************ consensus_7299#0 CGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGAC 600 consensus_7299#1 CGCGGTGCTGGCCGGCATGGCTACGAAGCGGCTGGAGGCAACCACCACCACCAGTCCGAC 585 ************************************************************ consensus_7299#0 GCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGA 660 consensus_7299#1 GCCCAAGATAGGCGTGGACGTGATGAAGATCGAGTACGGTGGGGGCAAACCGCTGGACGA 645 ************************************************************ consensus_7299#0 GTTTTTCCGCCTGATGACGCGCAACTT-CTCCGACGACGAGTGGCGCTACATACGCGGCC 719 consensus_7299#1 GTTTTTCCGCCTGATGACGCGCAACTTTCTCCGACGACGAGTGGCGCTACATACGCGGCC 705 *************************** ******************************** consensus_7299#0 GCGATGACGCCAGCGCGCAGCTGGAAGCGTTCATGCGCAACTGGTGCCTGAANGAGAGCT 779 consensus_7299#1 GCGATGA----------------------------------------------------- 712 ******* consensus_7299#0 ACGTGAAGAACGTGGGCGTGGGCATTACGGTCGATCTGAGGAAGATTAG 828 consensus_7299#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||