These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [CCGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCCAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATACGGCGGCCAGCAGTGAGCAGAATGCTGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGGAACGGAGGAGAAAGAGGAAGAGGAGCAACTAAACGGAAAGGCCACTGACGCAACGCAGCCAGAAGAGAGTGAGGAGAAGGAATCGGAAGCTGCGGAAGAGCCGGCACAGGAGAAGGTCAGTGTAGAGGAGAAGAAGGACGAATTCGTGAAGCCAACTGAAAGTGTGCCGCAGGAAAAGGTGGTGGCCCCCAAGCAGGAAGAAAGCAAGTCCGTGGATCTGAAGGAAGACTCGAAGGAAGCGGACAATGAGGACTCCCTGAACCTTACGATCGGCGAGGAGGATGAAAAGTTGCTTCACGATAGCAACATGGAGGTAGAGCAGAAGGAGGAAGAGACGCAAAAGAAGGAACAATCGTCCGCAAAGGCTAAAGAAAATGCCTCCGAAGACTCGAAGAAAAACGACGACAAGCGAGAGGGAAAGATCGAGAAGAGCGTGGTTACCTCCAGCACGGAGAAAGACGGCGCGGCAACTAAAACAACAG] [+] EMBL BM618897 [CCGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCCAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATACGGCGGCCAGCAGTGAGCAGAATGCTGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGGAACGGAGGAGAAAGAGGAAGAGGAGCAACTAAACGGAAAGGCCACTGACGCAACGCAGCCAGAAGAGAGTGAGGAGAAGGAATCGGAAGCTGCGGAAGAGCCGGCACAGGAGAAGGTCAGTGTAGAGGAGAAGAAGGACGAATTCGTGAAGCCAACTGAAAGTGTGCCGCAGGAAAAGGTGGTGGCCCCCAAGCAGGAAGAAAGCAAGTCCGTGGATCTGAAGGAAGACTCGAAGGAAGCGGACAATGAGGACTCCCTGAACCTTACGATCGGCGAGGAGGATGAAAAGTTGCTTCACGATAGCAACATGGAGGTAGAGCAGAAGGAGGAAGAGACGCAAAAGAAGGAACAATCGTCCGCAAAGGCTAAAGAAAATGCCTCCGAAGACTCGAAGAAAAACGACGACAAGCGAGAGGGAAAGATCGAGAAGAGCGTGGTTACCTCCAGCACGGAGAAAGACGGCGCGGCAACTAAAACAACAG] consensusID : consensus_730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [CCGGGAAAATCGGCCAAAGCTGATGCTTGGTGTGAAAATTGGACCGTAAATTCGCGTACAAACATGACGGAAACGCCCGAAAAGCGAAAACTCAGTGAACTGCGCGTGGTGGACCTGAAGCTGGAGCTGGAAAAGCGTGGAAAGGATGGCAACGGTGTGAAAAATGTGCTTCTGGAGCGGCTCACTCAGACGTTGCGGGACGAGGGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCTAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATGCGGCGGCCAGCAGTGAGCAGAATGCAGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGAAACGGAGGAGCGAGAGGAGCCAGGAGCAACAGTGAGGAAGAGCAGTAAATGGCAATTTTG] [+] EMBL BM636967 [CCGGGAAAATCGGCCAAAGCTGATGCTTGGTGTGAAAATTGGACCGTAAATTCGCGTACAAACATGACGGAAACGCCCGAAAAGCGAAAACTCAGTGAACTGCGCGTGGTGGACCTGAAGCTGGAGCTGGAAAAGCGTGGAAAGGATGGCAACGGTGTGAAAAATGTGCTTCTGGAGCGGCTCACTCAGACGTTGCGGGACGAGGGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCTAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATGCGGCGGCCAGCAGTGAGCAGAATGCAGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGAAACGGAGGAGCGAGAGGAGCCAGGAGCAACAGTGAGGAAGAGCAGTAAATGGCAATTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_730#0 CCGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAA 60 consensus_730#1 ------------------------------------------------------------ consensus_730#0 GGTGAGAGCCAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATACGGC 120 consensus_730#1 ------------------------------------------------------------ consensus_730#0 GGCCAGCAGTGAGCAGAATGCTGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAA 180 consensus_730#1 -----------------------------------------------CCGGGAAAATCG- 12 *** * * * * consensus_730#0 AGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGGAACGGAGGAGAAAGAGGAAGA 240 consensus_730#1 ---GCCAAAGCTGATGCTTGGTGTGAAAATTGGACCGTAAATTCGCGTACAAACATGACG 69 * * * ** * *** *** **** * ** * ** * consensus_730#0 GGAGCAACTAAACGGAAAGGCCACTGACGCAACGCAGCCAGAAGAGAGTGAGGAGAAGGA 300 consensus_730#1 GAAACGCCCGAAAAGCGAA-----------AACTCAGTGAACTGCGCGTGGTGGACCTGA 118 * * * * ** * * *** *** * * * *** * ** consensus_730#0 ATCGGAAGCTGCGGAAGAGCCGGCACAGGAGAAGGTCAGTGTAGAGGAGAAGAAGGACGA 360 consensus_730#1 AGCTGGAGCTG--GAAAAGCGTGGAAAGGATGGCAACGGTGT---------GAAAAATGT 167 * * * ***** *** *** * * **** * **** *** * * consensus_730#0 ATTCGTGAAGCCAACTGAAAGTGTGCCGCAGGAAAAGGTGGTGGCCCCCAAGCAGGAAGA 420 consensus_730#1 GCTTCTGGAGCGGCTCACTCAGACGTTGCGGGACGAGGGGCTCGATCCGGAGACGATGGA 227 * ** *** * ** *** *** * * * ** ** * ** consensus_730#0 AAGCAAGTCCGTGGATCTGAAGGAAGACTCGAAGGAAGCGGACAATGAGGACTCCCTGAA 480 consensus_730#1 GTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGG-------TGAGAGCTAGC---- 276 ** * * * **** * **** * * **** ** * consensus_730#0 CCTTACGATCGGCGAGGAGGATGAAAAGTTGCTTCACGATAGCAACATGGAGGTAGAGCA 540 consensus_730#1 ----ACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATGCGGCGGCC-AGCA 331 *** *** ** ******* * * * * * * ** ** **** consensus_730#0 GAAGGAGGAAGAGACGCAAAAGAAGGAACAATCGTCCG-CAAAGGCTAAAGAAAATGCCT 599 consensus_730#1 GTGAGCAGAATGCAGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGG 391 * * *** * ** ** * ** *** * *** ** ** * consensus_730#0 CCGAAGACTCGAAGAAAAACGACGACAAGCGAGAGGGAAAGATCGAGAAGAGCGTGGTTA 659 consensus_730#1 ACGAAGAGCCAGCTGTCGAAAATGGAAAG--GAAACGGAGGAGCGAGAGGAGCCAGG--A 447 ****** * * * * *** * * * ** ***** **** ** * consensus_730#0 CCTCCAGCACGGAGAAAGACGGCGCGGCAACTAAAACAACAG 701 consensus_730#1 GCAACAGTGAGGAAGAGCAGTAAATGGCAATTTTG------- 482 * *** *** * * ***** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||