cluster # 730

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Anopheles gambiae
cluster # 730 cluster # 730 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_730#0 length = 701 sequences # 1

consensus_730#1 length = 482 sequences # 1

consensusID : consensus_730#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 701
fasta sequence

                              [CCGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCCAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATACGGCGGCCAGCAGTGAGCAGAATGCTGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGGAACGGAGGAGAAAGAGGAAGAGGAGCAACTAAACGGAAAGGCCACTGACGCAACGCAGCCAGAAGAGAGTGAGGAGAAGGAATCGGAAGCTGCGGAAGAGCCGGCACAGGAGAAGGTCAGTGTAGAGGAGAAGAAGGACGAATTCGTGAAGCCAACTGAAAGTGTGCCGCAGGAAAAGGTGGTGGCCCCCAAGCAGGAAGAAAGCAAGTCCGTGGATCTGAAGGAAGACTCGAAGGAAGCGGACAATGAGGACTCCCTGAACCTTACGATCGGCGAGGAGGATGAAAAGTTGCTTCACGATAGCAACATGGAGGTAGAGCAGAAGGAGGAAGAGACGCAAAAGAAGGAACAATCGTCCGCAAAGGCTAAAGAAAATGCCTCCGAAGACTCGAAGAAAAACGACGACAAGCGAGAGGGAAAGATCGAGAAGAGCGTGGTTACCTCCAGCACGGAGAAAGACGGCGCGGCAACTAAAACAACAG]

[+] EMBL BM618897             [CCGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCCAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATACGGCGGCCAGCAGTGAGCAGAATGCTGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGGAACGGAGGAGAAAGAGGAAGAGGAGCAACTAAACGGAAAGGCCACTGACGCAACGCAGCCAGAAGAGAGTGAGGAGAAGGAATCGGAAGCTGCGGAAGAGCCGGCACAGGAGAAGGTCAGTGTAGAGGAGAAGAAGGACGAATTCGTGAAGCCAACTGAAAGTGTGCCGCAGGAAAAGGTGGTGGCCCCCAAGCAGGAAGAAAGCAAGTCCGTGGATCTGAAGGAAGACTCGAAGGAAGCGGACAATGAGGACTCCCTGAACCTTACGATCGGCGAGGAGGATGAAAAGTTGCTTCACGATAGCAACATGGAGGTAGAGCAGAAGGAGGAAGAGACGCAAAAGAAGGAACAATCGTCCGCAAAGGCTAAAGAAAATGCCTCCGAAGACTCGAAGAAAAACGACGACAAGCGAGAGGGAAAGATCGAGAAGAGCGTGGTTACCTCCAGCACGGAGAAAGACGGCGCGGCAACTAAAACAACAG]




>consensus_730#0
CCGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAA
GGTGAGAGCCAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATACGGC
GGCCAGCAGTGAGCAGAATGCTGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAA
AGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGGAACGGAGGAGAAAGAGGAAGA
GGAGCAACTAAACGGAAAGGCCACTGACGCAACGCAGCCAGAAGAGAGTGAGGAGAAGGA
ATCGGAAGCTGCGGAAGAGCCGGCACAGGAGAAGGTCAGTGTAGAGGAGAAGAAGGACGA
ATTCGTGAAGCCAACTGAAAGTGTGCCGCAGGAAAAGGTGGTGGCCCCCAAGCAGGAAGA
AAGCAAGTCCGTGGATCTGAAGGAAGACTCGAAGGAAGCGGACAATGAGGACTCCCTGAA
CCTTACGATCGGCGAGGAGGATGAAAAGTTGCTTCACGATAGCAACATGGAGGTAGAGCA
GAAGGAGGAAGAGACGCAAAAGAAGGAACAATCGTCCGCAAAGGCTAAAGAAAATGCCTC
CGAAGACTCGAAGAAAAACGACGACAAGCGAGAGGGAAAGATCGAGAAGAGCGTGGTTAC
CTCCAGCACGGAGAAAGACGGCGCGGCAACTAAAACAACAG

consensusID : consensus_730#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [CCGGGAAAATCGGCCAAAGCTGATGCTTGGTGTGAAAATTGGACCGTAAATTCGCGTACAAACATGACGGAAACGCCCGAAAAGCGAAAACTCAGTGAACTGCGCGTGGTGGACCTGAAGCTGGAGCTGGAAAAGCGTGGAAAGGATGGCAACGGTGTGAAAAATGTGCTTCTGGAGCGGCTCACTCAGACGTTGCGGGACGAGGGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCTAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATGCGGCGGCCAGCAGTGAGCAGAATGCAGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGAAACGGAGGAGCGAGAGGAGCCAGGAGCAACAGTGAGGAAGAGCAGTAAATGGCAATTTTG]

[+] EMBL BM636967             [CCGGGAAAATCGGCCAAAGCTGATGCTTGGTGTGAAAATTGGACCGTAAATTCGCGTACAAACATGACGGAAACGCCCGAAAAGCGAAAACTCAGTGAACTGCGCGTGGTGGACCTGAAGCTGGAGCTGGAAAAGCGTGGAAAGGATGGCAACGGTGTGAAAAATGTGCTTCTGGAGCGGCTCACTCAGACGTTGCGGGACGAGGGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCTAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATGCGGCGGCCAGCAGTGAGCAGAATGCAGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGAAACGGAGGAGCGAGAGGAGCCAGGAGCAACAGTGAGGAAGAGCAGTAAATGGCAATTTTG]




>consensus_730#1
CCGGGAAAATCGGCCAAAGCTGATGCTTGGTGTGAAAATTGGACCGTAAATTCGCGTACA
AACATGACGGAAACGCCCGAAAAGCGAAAACTCAGTGAACTGCGCGTGGTGGACCTGAAG
CTGGAGCTGGAAAAGCGTGGAAAGGATGGCAACGGTGTGAAAAATGTGCTTCTGGAGCGG
CTCACTCAGACGTTGCGGGACGAGGGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCC
GCTGGCAAGGCGTCCGTGAAGAAGGTGAGAGCTAGCACGGGCGGTAAGACGGATGAAGAA
TCGGGCAGCACTGCGGATGCGGCGGCCAGCAGTGAGCAGAATGCAGATTCAACGGAGACT
AGTCAGCCGGCCGAGGATAGCAAAGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAG
GAAACGGAGGAGCGAGAGGAGCCAGGAGCAACAGTGAGGAAGAGCAGTAAATGGCAATTT
TG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_730#0      CCGGCTCGATCCGGAGACGATGGAGTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAA 60
consensus_730#1      ------------------------------------------------------------
                                                                                 

consensus_730#0      GGTGAGAGCCAGCACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATACGGC 120
consensus_730#1      ------------------------------------------------------------
                                                                                 

consensus_730#0      GGCCAGCAGTGAGCAGAATGCTGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAA 180
consensus_730#1      -----------------------------------------------CCGGGAAAATCG- 12
                                                                    *** * * * *  

consensus_730#0      AGCGTCGGACGAAGAGCCAGCTGTCGAAAATGGAAAGGGAACGGAGGAGAAAGAGGAAGA 240
consensus_730#1      ---GCCAAAGCTGATGCTTGGTGTGAAAATTGGACCGTAAATTCGCGTACAAACATGACG 69
                        * *  *      **  * ***  *** ****  *  **     *   **     *  

consensus_730#0      GGAGCAACTAAACGGAAAGGCCACTGACGCAACGCAGCCAGAAGAGAGTGAGGAGAAGGA 300
consensus_730#1      GAAACGCCCGAAAAGCGAA-----------AACTCAGTGAACTGCGCGTGGTGGACCTGA 118
                     * * *  *  **  *  *            *** ***  *   * * ***  *     **

consensus_730#0      ATCGGAAGCTGCGGAAGAGCCGGCACAGGAGAAGGTCAGTGTAGAGGAGAAGAAGGACGA 360
consensus_730#1      AGCTGGAGCTG--GAAAAGCGTGGAAAGGATGGCAACGGTGT---------GAAAAATGT 167
                     * * * *****  *** ***  * * ****      * ****         ***  * * 

consensus_730#0      ATTCGTGAAGCCAACTGAAAGTGTGCCGCAGGAAAAGGTGGTGGCCCCCAAGCAGGAAGA 420
consensus_730#1      GCTTCTGGAGCGGCTCACTCAGACGTTGCGGGACGAGGGGCTCGATCCGGAGACGATGGA 227
                       *  ** ***             *  ** ***  *** * * *  **  **  *   **

consensus_730#0      AAGCAAGTCCGTGGATCTGAAGGAAGACTCGAAGGAAGCGGACAATGAGGACTCCCTGAA 480
consensus_730#1      GTTTGAGATAGCCGCTGGCAAGGCGTCCGTGAAGAAGG-------TGAGAGCTAGC---- 276
                          **   *  * *   ****    *  **** * *       ****  **  *    

consensus_730#0      CCTTACGATCGGCGAGGAGGATGAAAAGTTGCTTCACGATAGCAACATGGAGGTAGAGCA 540
consensus_730#1      ----ACGGGCGGTAAGACGGATGAAGAATCGGGCAGCACTGCGGATGCGGCGGCC-AGCA 331
                         ***  ***  **  ******* * * *     *  *    *   ** **   ****

consensus_730#0      GAAGGAGGAAGAGACGCAAAAGAAGGAACAATCGTCCG-CAAAGGCTAAAGAAAATGCCT 599
consensus_730#1      GTGAGCAGAATGCAGATTCAACGGAGACTAGTCAGCCGGCCGAGGATAGCAAAGCGTCGG 391
                     *   *  ***   *     **    **  * **  *** *  *** **   **    *  

consensus_730#0      CCGAAGACTCGAAGAAAAACGACGACAAGCGAGAGGGAAAGATCGAGAAGAGCGTGGTTA 659
consensus_730#1      ACGAAGAGCCAGCTGTCGAAAATGGAAAG--GAAACGGAGGAGCGAGAGGAGCCAGG--A 447
                      ******  *        *  * *  ***    *  * * ** ***** ****  **  *

consensus_730#0      CCTCCAGCACGGAGAAAGACGGCGCGGCAACTAAAACAACAG 701
consensus_730#1      GCAACAGTGAGGAAGAGCAGTAAATGGCAATTTTG------- 482
                      *  ***   ***  *  *      ***** *