These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence [CCGATTGTTGAGCAGCTGCAGCAGGAACGAATCGAAACGTAGCCGTTTCCTTGGCAACCGAAGGGCGCTAACGCAGCAACTGTAGCCTGTCGCCCGTCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCTGTGCAGTGTCTCGCTACTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTTTTCCTGCTGGCCGCCGTTGAGAGTGCAACGGCCATCAGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGTTCCAGTGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACCTGAAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGCTTCGAAGATGGCATTGGTGCTAAGCGTTACTGCTCGTCGCGCGATCTCGGCAACTACTGCAACTATGTGCGCAATCCGGGCGATCAGATCGAGTACCGATCGTGCATCTACACCTGTGACACGGACGGGTGTAACAGTGCTCC-CGGCTCGGCGCAGTTCGTTTCCAGCACAGTGCTAGTGGTGCTGCTTCCCTTCATCCAGCTTCTTGCTGCTTCTCCTTCTCCGGAAGGTGACGCTTTAGATGTGCATTTTGCGGGTATTGACTTCTAGCGTATCATCCATCGTT] [+] EMBL BM587075 [CCGATTGTTGAGCAGCTGCAGCAGGAACGAATCGAAACGTAGCCGTTTCCTTGGCAACCGAAGGGCGCTAACGCAGCAACTGTAGCCTGTCGCCCGTCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCTGTGCAGTGTCTCGCTACTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTTTTCCTGCTGGCCGCCGTTGAGAGTGCAACGGCCATCAGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGTTCCAGTGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACCTGAAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGCTTCGAAGATGGCATTGGTGCTAAGCGTTACTGCTCGTCGCGCGATCTCGGCAACTACTGCAACTATGTGCGCAATCCGGGCGATCAGATCGAGTACCGATCGTGCATCTACACCTGTGACACGGACGGGTGTAACAGTGCTCC CGGCTCGGCGCAGTTCGTTTCCAGCACAGTGCTAGTGGTGCTGCTTCCCTTCATCCAGCTTCTTGCTGCTTCTCCTTCTCCGGAAGGTGACGCTTTAGATGTGCATTTTGCGGGTATTGACTTCTAGCGTATCATCCATCGTT] [+] EMBL BM595378 [CCG TTGTTGAGCAGCTGCAGCAGGAACGAATCGAAACGTAGCCGTTTCCTTGGCAACCGAAGGGCGCTAACGCAGCAACTGTAGCCTGTCGCCCGTCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCTGTGCAGTGTCTCGCTACTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTTTTCCTGCTGGCCGCCGTTGAGAGTGCAACGGCCATCAGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGTTCCAGTGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACCTGAAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGCTTCGAAGATGGCATTGGTGCTAAGCGTTACTGCTCGTCGCGCGATCTCGGCAACTACTGCAACTATGTGCGCAATCCGGGCGATCAGATCGAGTACCGATCGTGCATCTACACCTGTGACACGGACGGGTGTAACAGTGCTCCACGCCTCGGCGCAGTTCGTTTCCAGCACAGTGCTAGTGGTGCTGCTTCCCTTCATCCAGCTTCTTGCTGCTTCT CTTCTCCGGAAGGTGACGCTTTAGATGTGCATTT ] consensusID : consensus_7300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGGAGTGATCGTGTGCGGGTGTGTTTGTATTGTTAAACAGCAGGAACGAATCGAAACGTAGCCGTTTCCTTGGCAACCGAAGGGCGCTAACGCAGCAACTGTAGCCTGTCGTCCGTCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCTGTGCAGTGTCTCGCTACTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTTTTCCTGCTGGCCGCCGTAGAGAGTGGTAAGTTGAAAGTGAGTGCGTGACGCGTAAAATTACACGCGGGGTGGAAAATGAAACCATAAATCCCCTCTTTGATTAAGCAAAGCAGGGGGGAAGTGCACTGACCAATGAGTCATGCTAGGAGGGGCAGGGGAATGGTATTTGTTGTTGTTTGATGTGGTGAGAAAAGCTGAGACACTCACGCCCAGTGAGCAGTGTGAGCAGTGTGAGAAGCGAGGATCAACAAGAAGTGAGAATTATGCTTTGCACCTTGCCAAATGCAAATTAAATCGATCAAACACAGACACACGTGCTGCTGCTGCTGCTGTTACACGGAGGCGCATGGAACACCAGAAGGCCCACTTCCGCAGTGGAATTGAAAAGCGCGATTT] [+] EMBL BM596439 [CCGGAGTGATCGTGTGCGGGTGTGTTTGTATTGTTAAACAGCAGGAACGAATCGAAACGTAGCCGTTTCCTTGGCAACCGAAGGGCGCTAACGCAGCAACTGTAGCCTGTCGTCCGTCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCTGTGCAGTGTCTCGCTACTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTTTTCCTGCTGGCCGCCGTAGAGAGTGGTAAGTTGAAAGTGAGTGCGTGACGCGTAAAATTACACGCGGGGTGGAAAATGAAACCATAAATCCCCTCTTTGATTAAGCAAAGCAGGGGGGAAGTGCACTGACCAATGAGTCATGCTAGGAGGGGCAGGGGAATGGTATTTGTTGTTGTTTGATGTGGTGAGAAAAGCTGAGACACTCACGCCCAGTGAGCAGTGTGAGCAGTGTGAGAAGCGAGGATCAACAAGAAGTGAGAATTATGCTTTGCACCTTGCCAAATGCAAATTAAATCGATCAAACACAGACACACGTGCTGCTGCTGCTGCTGTTACACGGAGGCGCATGGAACACCAGAAGGCCCACTTCCGCAGTGGAATTGAAAAGCGCGATTT] consensusID : consensus_7300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 590 fasta sequence [AATCGCCCGAGGATTTACACAAATTGGGCGTACAACACACTTGTTATAAGTGGTCGTTTTACTCTACACTCACAATGCAGTCAGTCCGCAGCAAAAGGATAACGAGGACGAAAGGACGAGATTTTGGGCCATTAAAATAATTATCTGGCTTTCGGGATGGAAATTTGCACTGTCAGTGTTACAGCAAAGGGGAGAGGGGGAAAGGCAACGGGATTACGGATGCACTTTTTTGCCGGGAAACCCCCACATCGTAGTGTTCCAGCTCCAGATTATGCTCGTTTCGTTGAATAAGCCACCA-ACACCTAAGGGAAGGCGATGACAATTTGAATGCTAACGAATGTTTCTTTCTTCCTCCACCAATTCCACCACCACCTTCTTCTCCACTGGGTGTGTAAATCGCCTCTATCCTCAAAGCAACGGCCATCAGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGTTCCAGATGCAGCGAATGGTTCGAACGGTTCGATACGCCCGA-CTGAAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGCTTCGAAGCATGGCATTGGTGC] [+] EMBL AL695895 [AATCGCCCGAGGATTTACACAAATTGGGCGTACAACACACTTGTTATAAGTGGTCGTTTTACTCTACACTCACAATGCAGTCAGTCCGCAGCAAAAGGATAACGAGGACGAAAGGACGAGATTTTGGGCCATTAAAATAATTATCTGGCTTTCGGGATGGAAATTTGCACTGTCAGTGTTACAGCAAAGGGGAGAGGGGGAAAGGCAACGGGATTACGGATGCACTTTTTTGCCGGGAAACCCCCACATCGTAGTGTTCCAGCTCCAGATTATGCTCGTTTCGTTGAATAAGCCACCA ACACCTAAGGGAAGGCGATGACAATTTGAATGCTAACGAATGTTTCTTTCTTCCTCCACCAATTCCACCACCACCTTCTTCTCCACTGGGTGTGTAAATCGCCTCTATCCTCAAAGCAACGGCCATCAGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGTTCCAGATGCAGCGAATGGTTCGAACGGTTCGATACGCCCGA CTGAAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGCTTCGAAGCATGGCATTGGTGC] [+] EMBL BX620800 [ TTGGGCGTACAACACACTTGTTATAAGTGGTCGTTTTACTCTACACTCACAATGCAGTCAGTCCGCAGCAAAAGGATAACGAGGACGAAAGGACGAGATTTTGGGCCATTAAAATAATTATCTGGCTTTCGGGATGGAAATTTGCACTGTCAGTGTTACAGCAAAGGGGAGAGGGGGAAAGGCAACGGGATTACGGATGCACTTTTTTGCCGGGAAACCCCCACATCGTAGTGTTCCAGCTCCAGATTATGCTCGTTTCGTTGAATAAGCCACCACACACCTAAGGGAAGGCGATGACAATTTGAATGCTAACGAATGTTTCTTTCTTCCTCCACCAATTCCACCACCACCTTCTTCTCCACTGGGTGTGTAAATCGCCTCTATCCTCAAAGCAACGGCCATCAGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGTTCCAG TGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACCTGAAGCCGGTCGACTGC ] consensusID : consensus_7300#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [CCCCAGGCTTATGCGGGTGTGTTTGTATTGTTGAGCAGCTGCAGCANTGAACGAATCGAAACGTAGCCGTTTCCTTGGCAACCGAACGCAGCAACTGTAGCCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCTGTGCAGTGTCTCGCTACTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTTTTCCTGCTGGCCGCCGTAGAGAGTGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGTTCCAGTGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACCTGAAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGCTTCGAAGATGGAATTGGTGCTAAGCGTTACTGCTCGTCGCGCGATCTCGGCAACTACTGCAACTATGTGCGCAATCCGGGCGATCAGAT] [+] EMBL AL693219 [CCCCAGGCTTATGCGGGTGTGTTTGTATTGTTGAGCAGCTGCAGCANTGAACGAATCGAAACGTAGCCGTTTCCTTGGCAACCGAACGCAGCAACTGTAGCCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCTGTGCAGTGTCTCGCTACTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTTTTCCTGCTGGCCGCCGTAGAGAGTGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGTTCCAGTGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACCTGAAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGCTTCGAAGATGGAATTGGTGCTAAGCGTTACTGCTCGTCGCGCGATCTCGGCAACTACTGCAACTATGTGCGCAATCCGGGCGATCAGAT] consensusID : consensus_7300#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [ATGGCTCAGGCAGAATCGGACGAGGCCNATTAGGTGTGTAAATCGCCTCTATCCTCAAAGCAACGGCCATCAGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGGTTCCAGTGCAGCGCAATGGTTCGAACGGGTTCGATACGCCCGACCTGAAGCCGGATCGACTGCTCCAAGCGTGTACGGGGCCAAGATTCTGCATCAAGGCACAGTTGGGCACGCGTTCGAAGGGTATCGTCCGTACCGTNCTATGAGCCCAAGCGTCCGGGTATGTGGCGTNCGTGACTTCTGAGTGGGGCCGTAAAACCACTACGTCGGCCGGCGTTNCACAATTGGGCNCGTCCGTTCGGTATATCAACCNAGCGAGAGCGGTTAGAGCCAGCAGCACCCCGGTGGNTGGCGCCCCAAGAGACACAGGAGAGGNTAGGGGGNAAGGAGAGCAAAGTTATAGGGAGGCTA] [+] EMBL BX468323 [ATGGCTCAGGCAGAATCGGACGAGGCCNATTAGGTGTGTAAATCGCCTCTATCCTCAAAGCAACGGCCATCAGCTGCTACGTGTGCAATACGACCGACTCGACGACACCGGTTCCAGTGCAGCGCAATGGTTCGAACGGGTTCGATACGCCCGACCTGAAGCCGGATCGACTGCTCCAAGCGTGTACGGGGCCAAGATTCTGCATCAAGGCACAGTTGGGCACGCGTTCGAAGGGTATCGTCCGTACCGTNCTATGAGCCCAAGCGTCCGGGTATGTGGCGTNCGTGACTTCTGAGTGGGGCCGTAAAACCACTACGTCGGCCGGCGTTNCACAATTGGGCNCGTCCGTTCGGTATATCAACCNAGCGAGAGCGGTTAGAGCCAGCAGCACCCCGGTGGNTGGCGCCCCAAGAGACACAGGAGAGGNTAGGGGGNAAGGAGAGCAAAGTTATAGGGAGGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7300#0 --------------------------CCGATTGTTGAGCA-GCTGCAGCAG-GAACGAAT 32 consensus_7300#3 ---CCCCAGGCTTATGCGGGTGTGTTTGTATTGTTGAGCA-GCTGCAGCANTGAACGAAT 56 consensus_7300#1 CCGGAGTGATCGTGTGCGGGTGTGTTTGTATTGTTAAACA-GCAG-------GAACGAAT 52 consensus_7300#2 ---------AATCGCCCGAGGATTTACACA-AATTGGGCGTACAACACACTTGTTATAAG 50 consensus_7300#4 ------------------ATGGCTCAGGCAGAATCGGACG------AGGCCNATTAGGTG 36 * * * consensus_7300#0 CGAAACGTAGCCGTTTCCTTGGCAACCGAAGGGCGCTAACGCAGCAACTGTAGCCTGTCG 92 consensus_7300#3 CGAAACGTAGCCGTTTCCTTGGCAACCGAA---------CGCAGCAACTGTAGCC----- 102 consensus_7300#1 CGAAACGTAGCCGTTTCCTTGGCAACCGAAGGGCGCTAACGCAGCAACTGTAGCCTGTCG 112 consensus_7300#2 TGGTCGTTTTACTCTACACTCACAATGCAGTCAGTCCGCAGCAAAAGG-ATAACGAG--G 107 consensus_7300#4 TG-TAAATCGCCTCTATCCTCAAAGCAACGGCCATCAGCTGCTACGTGTGCAATACG--A 93 * * * * * * ** * consensus_7300#0 CCCGTCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCT-GTGCAGTGTCTC 151 consensus_7300#3 ------GTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCT-GTGCAGTGTCTC 155 consensus_7300#1 TCCGTCGTCCGTCGTCTGTCGCGCGTCACTTTGGGTGTGCTGCTGCT-GTGCAGTGTCTC 171 consensus_7300#2 ACGAAAGGACGAGATTT-TGGGCCATTAAAATAATTATCTGGCTTTCGGGATGGAAATTT 166 consensus_7300#4 CCGACTCGACGACACC-----GGTTCCAGTGCAGCGCAATGGTTC---GAACGG--GTTC 143 ** * * * * * * consensus_7300#0 GCTA---CTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTT 208 consensus_7300#3 GCTA---CTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTT 212 consensus_7300#1 GCTA---CTAATTAAACGTGGAAAGAAAAAACCATGAAGCAATTTGGACTGGGAGTGGTT 228 consensus_7300#2 GCACTGTCAGTGTTACAGCAAAGGGGAGAGGGGGAAAGGCAACGGGATTACGGATGCACT 226 consensus_7300#4 GATACGCCCGACCTGAAGCCGGATCGACTGCTCCAAGCGTG-------TACGGGGCCAAG 196 * * * * * ** consensus_7300#0 TTCCTGCTGGCCGCCGTTGAGAGTGCAACGGCCATCAGCTGCTACGTGTGCAATACGACC 268 consensus_7300#3 TTCCTGCTGGCCGCCGTAGAGAGTGC-------------TGCTACGTGTGCAATACGACC 259 consensus_7300#1 TTCCTGCTGGCCGCCGTAGAGAGTGGTAAGTTGA-----AAGTGAGTGCGTGACGCGTAA 283 consensus_7300#2 TTTTTGCCGGGAAACCCCCACATCGTAGTGTTCCAGCTCCAGATTATGCTCGTTTCGTTG 286 consensus_7300#4 ATTCTGCATCAAGGCACAGTTGGGCACGCGTTCGAA----GGGTATCGTCCGTACCGTNC 252 * *** * * ** consensus_7300#0 GACTCGACGACACCGTTCCAGTGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACCTG 328 consensus_7300#3 GACTCGACGACACCGTTCCAGTGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACCTG 319 consensus_7300#1 AATTACACG-CGGGGTGGAAAATGAAACCATAAATCCCCTCTTTGATTAAGCAAAGCAGG 342 consensus_7300#2 AATAAGCCACCAACACCTAAGGGAAGGCGATG-ACAATTTGAATGCTAACGAATGTTTCT 345 consensus_7300#4 TATGAGCC-CAAGCGTCC--GGGTATGTGGCG-TNCG--TGACTTCTGAGTGGGGCCG-- 304 * * * * * consensus_7300#0 AAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGC 388 consensus_7300#3 AAGCCGGTCGACTGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGC 379 consensus_7300#1 GGGGAAGTGCACTGA-CCAATGAGTC--ATGCTAGGA---GGGGCAGGGGAATGGTATTT 396 consensus_7300#2 TTCTTCCTCCACCAATTCCACCACCAC-CTTCTTCTCCACTGGGTGTGTAAATCGCCTCT 404 consensus_7300#4 ---TAAAACCACTACGTCGGCCGGCGT-----TNCACAATTGGGCNCGTCCGTTCGGTAT 356 ** * * * consensus_7300#0 TTCGAAGATGGCATTGGTGCTAAGCGTTACT-GCTCGTCGCGCGATCTCGGCAACTACTG 447 consensus_7300#3 TTCGAAGATGGAATTGGTGCTAAGCGTTACT-GCTCGTCGCGCGATCTCGGCAACTACTG 438 consensus_7300#1 GTTGTTGTTTGATGTGGTGAGAAAAGCTGAG-ACAC-TCACG----CCCAGTGAGCAGTG 450 consensus_7300#2 ATCCTCAAAGCAACGGCCATCAGCTGCTACGTGTGCAATACG---ACCGACTCGACGACA 461 consensus_7300#4 ATCAACCNAGCGAGAGCGGTTAGA-GCCA-----GCAGCAC-----CCCGGTGGNTGGCG 405 * * * * * * * consensus_7300#0 CAACTATGTGCGCAATCCGGGCGATCAGATCGAGTACCGATCGTGCATCTACACCTGTGA 507 consensus_7300#3 CAACTATGTGCGCAATCCGGGCGATCAGAT------------------------------ 468 consensus_7300#1 TGAGCA-GTGTGAGAAGCGAGGATCAACAAGAAGTGAGAATTATGC-TTTGCACCT-TGC 507 consensus_7300#2 CCGTTCCAGATGCAGCGAATGGTTCGAACGGTTCGATACGCCCGACTGAAGCCGGTCGAC 521 consensus_7300#4 CCCCAAGAGACACAG-GAGAGGNTAGGG-GGNAAGGAGAGCAAAGTTATAGGGAGGCTA- 462 * consensus_7300#0 CACGGACGGGTGTAACAGTGCTCCCGGCTCGGCGCAGTTCGTTTCCAGCACAGTGCTAGT 567 consensus_7300#3 ------------------------------------------------------------ consensus_7300#1 CAAATGCAAATTAAATCGATCAAACACAGACACACGTGCTGCTGCTGCTGCTGTTACACG 567 consensus_7300#2 TGCTCCAACGTGTACGGGGCCAAGTTCTGCATCAAGCACATTGGCCGCTTCGAAGCATGG 581 consensus_7300#4 ------------------------------------------------------------ consensus_7300#0 GGTGCTGCTTCCCTTCATCCAGCTTCTTGCTGCTTCTCCTTCTCCGGAAGGTGACGCTTT 627 consensus_7300#3 ------------------------------------------------------------ consensus_7300#1 GAGGCG--CATGGAACACCAGAAGGCCCACTTCCGCAGTGGAATTGAAAAGCGCGATTT- 624 consensus_7300#2 CATTGGTGC--------------------------------------------------- 590 consensus_7300#4 ------------------------------------------------------------ consensus_7300#0 AGATGTGCATTTTGCGGGTATTGACTTCTAGCGTATCATCCATCGTT 674 consensus_7300#3 ----------------------------------------------- consensus_7300#1 ----------------------------------------------- consensus_7300#2 ----------------------------------------------- consensus_7300#4 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||