These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 658 fasta sequence [CCGGGGAACGGGAAGCGCTACAGTTCATGCGCGGCATGATGGACGAATGTACGCACCTGAAGAACTTCTCCGTACCGTACGACACCTCGCTCATCATTGCCGTCTGCGCGAAGGACGATGCGTACATTCCGCGCGATGGCTGCACCAGCCTGGAGGACATTTGGCCCGGCGCCGAAATTCGATACCTGGACGCGGGCCACGTCAGCGCGTACGTGCTGCACCAGAAGCTGTTCCGCTCGTGCATTATCGAGGCGTTTGAGCGGGCGAAGAAAAAGTGGGTCCCGGAGGGGGAACAGTTGCGCAAACAGGTGAACGGTGCGCGGCCAGGCAACAGCCCATCCACCACGGTTGGAGGGTGATGTGCCGGAAGGGCCACCGAAATAGGCGACCAGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGATACTCTGAGGAAATGCTGCTGCCTTGAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATCGCGGAAACGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAACAAGTTAGGGGTGTGCCGCGTTCACCCTCAGCTTCCGGGGGGAGAGCAGCAGCGAACCTTTTTTGGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTTATATGGTTCGTTTGCTCG] [+] EMBL BM608857 [CCGGGGAACGGGAAGCGCTACAGTTCATGCGCGGCATGATGGACGAATGTACGCACCTGAAGAACTTCTCCGTACCGTACGACACCTCGCTCATCATTGCCGTCTGCGCGAAGGACGATGCGTACATTCCGCGCGATGGCTGCACCAGCCTGGAGGACATTTGGCCCGGCGCCGAAATTCGATACCTGGACGCGGGCCACGTCAGCGCGTACGTGCTGCACCAGAAGCTGTTCCGCTCGTGCATTATCGAGGCGTTTGAGCGGGCGAAGAAAAAGTGGGTCCCGGAGGGGGAACAGTTGCGCAAACAGGTGAACGGTGCGCGGCCAGGCAACAGCCCATCCACCACGGTTGGAGGGTGATGTGCCGGAAGGGCCACCGAAATAGGCGACCAGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGATACTCTGAGGAAATGCTGCTGCCTTGAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATCGCGGAAACGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAACAAGTTAGGGGTGTGCCGCGTTCACCCTCAGCTTCCGGGGGGAGAG ] [+] EMBL BM628274 [ ccgGCGCGGCATGATGGACGAATGTACGCACCTGAAGAACTTCTCCGTACCGTACGACACCTCGCTCATCATTGCCGTCTGCGCGAAGGACGATGCGTACATTCCGCGCGATGGCTGCACCAGCCTGGAGGACATTTGGCCCGGCGCCGAAATTCGATACCTGGACGCGGGCCACGTCAGCGCGTACGTGCTGCACCAGAAGCTGTTCCGCTCGTGCATTATCGAGGCGTTTGAGCGGGCGAAGAAAAAGTGGGTCCCGGAGGGGGAACAGTTGCGCAAACAGGTGAACGGTGCGCGGCCAGGCAACAGCCCATCCACCACGGTT GAGGGTGATGTGCCGGAAGGGCCACCGAAATAGGCGACCAGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGATACTCTGAGGAAATGCTGCTGCCTTGAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATCGCGGAAACGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAAC AGTTAGGGGTGTGCCGCGTTCACCCTCAGC TCCGGGGGGAGAGCAGCAGCGAACCTTTTTTGGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTTATATGGTTCGTTTGCTCG] consensusID : consensus_7304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence [CCGGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGAAACACAGAGGAAATGCTGCTGCCTTCAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATTGCGGAAACGGGGGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAACAGTCAGGGTGTGCCGCGTTCAACCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTTTAGCGGACGTTGTGGAACTCG-GGAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGTTTTCAAGGGGTGCAGGACGAAAACGTACAAAAGAAAGCGGGAAAATGAGCCGCAGAACGAAGAACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGATAGAGAGAGCTGTTATATTCTGATTATTGTTTTAGCTAGTTAAGGAATGCGAATGTGAATCGACAGTTTCGAAAGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTGTACAGTGAATGATTGATGATTCCTTTCACT] [+] EMBL BM622873 [CCGGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGAAACACAGAGGAAATGCTGCTGCCTTCAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATTGCGGAAACGGGGGGGGGGAGACATTAACCGGTACGCCGGGAAACAAAACAGTCAGGGTGTGCCGCGTTCAACCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTTTAGCGGACGTTGTGGAACTCG GGAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGTTTTCAAGGGGTGCAGGACGAAAACGTACAAAAGAAAGCGGGAAAATGAGCCGCAGAACGAAGAACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGATAGAGAGAGCTGTTATATTCTGATTATTGTTTTAGCTAGTTAAGGAATGCGAATGTGAATCGACAGTTTCGAAAGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTGTACAGTGAATGATTGATGATTCCTTTCACT] [+] EMBL BX610462 [ AATGCTGCTGCCTTCAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATTGTGGAAA AACGGGGGGGAAACATCAACCGGTACGCCGGGAAACAAAACAGTTAGGGTGTGCCACGTTCACCCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTGAAGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGGTTTCAAGGGGTGCACGACGAAAACGTGCAAAAGAAAGCGGGAAAATGAGCCGCAGAAC TGCACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTT ] consensusID : consensus_7304#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AAGCGGGAAAATGAGCCGCAGAACTGCACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGAGCACGAGAGAGATAGAGAGAGCTGTTATATTCTGATTATTGTTTTAGCTAGTTAAGGATTGCGAATGTGAATCGACAGTTTCGAAAGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTCTACAGTGAATAATTGATGATTTCTCTCACTCTACTTATTTAAACTCATTCAAACGTTCTTCATGTGCTGGTATTTTCAACACACTGGTATTTTTAATTGGTAATATACCACTTTGAGGTGAGTTCCAATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAAGTTTCGTTAGTGAACTGTTTTTTGCCACTGCAATCTTCTGTTGATTCAAATAGTGATAGTGTTTCCATGTTACCAACTAATGATTGCTTTGTAATAAACTTGC] [+] EMBL BX612569 [AAGCGGGAAAATGAGCCGCAGAACTGCACAGAACGAAGAAATACCGTACAAATGCTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGAGCACGAGAGAGATAGAGAGAGCTGTTATATTCTGATTATTGTTTTAGCTAGTTAAGGATTGCGAATGTGAATCGACAGTTTCGAAAGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTCTACAGTGAATAATTGATGATTTCTCTCACTCTACTTATTTAAACTCATTCAAACGTTCTTCATGTGCTGGTATTTTCAACACACTGGTATTTTTAATTGGTAATATACCACTTTGAGGTGAGTTCCAATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAAGTTTCGTTAGTGAACTGTTTTTTGCCACTGCAATCTTCTGTTGATTCAAATAGTGATAGTGTTTCCATGTTACCAACTAATGATTGCTTTGTAATAAACTTGC] consensusID : consensus_7304#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [GCAATCATTGTGGAAAAACGGGGGGGAAACATCAACCGGTACGCCGGTAAACAAAACAGTTAGGGGGTGCCACGTTCACCCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTGAAGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGGTTTCAAGGGGTGCACGACGAAAACGTGCAAAAGAAAGCGGGAAAAAGAGCCGCAGAACCGCACAGAA] [+] EMBL BX612432 [GCAATCATTGTGGAAAAACGGGGGGGAAACATCAACCGGTACGCCGGTAAACAAAACAGTTAGGGGGTGCCACGTTCACCCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTGAAGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGCTTCAGTCGATCCGGCATCACGGGTTTCAAGGGGTGCACGACGAAAACGTGCAAAAGAAAGCGGGAAAAAGAGCCGCAGAACCGCACAGAA] consensusID : consensus_7304#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [CCGCTCATTCAAACGTTCTTCATGTACTGGTATTTTTAATTGGTAATGTACCACTTTGAGGTGAGTTCCAATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAAGTTTCATTAGTGAACTGTTTCTTTGCCACTGCAATATTCTGCTGATTCAAATAGTGATAGTGTTTCTATGTTACCAACTAATTATTGCTTTGTAATAAACTTGCTACAAAATGTATAGC] [+] EMBL BM601222 [CCGCTCATTCAAACGTTCTTCATGTACTGGTATTTTTAATTGGTAATGTACCACTTTGAGGTGAGTTCCAATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAAGTTTCATTAGTGAACTGTTTCTTTGCCACTGCAATATTCTGCTGATTCAAATAGTGATAGTGTTTCTATGTTACCAACTAATTATTGCTTTGTAATAAACTTGCTACAAAATGTATAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7304#1 ------------------------------------------------------------ consensus_7304#3 ------------------------------------------------------------ consensus_7304#0 ------------------------------------------------------------ consensus_7304#2 AAGCGGGAAAATGAGCCGCAGAACTGCACAGAACGAAGAAATACCGTACAAATGCTGTTT 60 consensus_7304#4 ------------------------------------------------------------ consensus_7304#1 ------------------------------------------------------------ consensus_7304#3 ------------------------------------------------------------ consensus_7304#0 ------------------------------------------------------------ consensus_7304#2 TACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGGTTTTGAACGTTTGCAAGGTTG 120 consensus_7304#4 ------------------------------------------------------------ consensus_7304#1 -----------CCGGCGCTAGCTAGCCATGGGGTGGGACAAAAACCAAAGAAACACAGAG 49 consensus_7304#3 ------------------------------------------------------------ consensus_7304#0 -------------CCGGGGAACGGGAAGCGCTACAGTTCATGCGCGGCATGATGGACGAA 47 consensus_7304#2 TGATAATAATTGCGCAAGCGAATGGTAGCGAGAGAGCACGAGAGAGATAGAGAGAGCTGT 180 consensus_7304#4 ------------------------------------------------------------ consensus_7304#1 GAAATGCTGCTGCCTTCAGCCACAGCTCCTGCGAAAGCCTCCGCAATCATTGCGGAAACG 109 consensus_7304#3 ------------------------------------------GCAATCATTGTGGAAA-A 17 consensus_7304#0 TGTACGCACCTGAAGAACTTCTCCGTACCGTACGACACCTCGCTCATCATTGCCGTCT-- 105 consensus_7304#2 TATATTCTGATTATTGTTTTAGCTAGTTAAGGATTGCGAATGTGAATCGACAGTTTCGAA 240 consensus_7304#4 ------------------------------------------------------------ consensus_7304#1 GGGGGGGGGAGACATTAACCGGTACGC-CGGGAAACAAAACAGT-CAGGGTGTGCCGCGT 167 consensus_7304#3 ACGGGGGGGAAACATCAACCGGTACGC-CGGTAAACAAAACAGT-TAGGGGGTGCCACGT 75 consensus_7304#0 GCGCGAAGGACGATGCGTACATTCCGCGCGATGGCTGCACCAGCCTGGAGGACATTTGGC 165 consensus_7304#2 AGTGAGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTCTACAGTG 300 consensus_7304#4 ------------------------------------------------------------ consensus_7304#1 TCAACCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTTTAGCGGACGTTGTGGAACTCG 227 consensus_7304#3 TCACCCTCAGCTCCGGGGGGAGAGCAGCAGCGAACCTTGAAGCGGACGTTCTGGAACTCG 135 consensus_7304#0 CCGGCGCCGAAATTCGATACCTGGACGCGGGCCACGTCAGCGCGTACGTGCTGCACCA-- 223 consensus_7304#2 AATAATTGATGATTTCTCTCACTCTACTTATTTAAACTCATTCAAACGTTCTTCATGTGC 360 consensus_7304#4 ---------------------------------CCGCTCATTCAAACGTTCTTCATGT-- 25 * **** * * consensus_7304#1 --------GGAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGC 279 consensus_7304#3 C-------AAAACAAACGATCTGCTGTATTATATGGTTCGTTTGCTCGGGCCACGAACGC 188 consensus_7304#0 --------GAAGCTGTTCCGCTCGTGCATTAT-CGAGGCGTTTGAGCGGGCGAAGAAAAA 274 consensus_7304#2 TGGTATTTTCAACACACTGGTATTTTTAATTGGTAATATACCACTTTGAGGTGAGTTCCA 420 consensus_7304#4 ---------------ACTGGTATTTTTAATTGGTAATGTACCACTTTGAGGTGAGTTCCA 70 * * * * * * consensus_7304#1 TTCAGTC--GATCCGGCATCACGGTTTTCAAGGGGTGCAGGACGAAAACGTACAAAAGAA 337 consensus_7304#3 TTCAGTC--GATCCGGCATCACGGGTTTCAAGGGGTGCACGACGAAAACGTGCAAAAGAA 246 consensus_7304#0 GTGGGTCCCGGAGGGGGAACAGTTGCGCAAACAGGTGAACGGTGCGCGGCCAGGCAACAG 334 consensus_7304#2 ATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAA-GTTTCGTTAGTGAACTG 479 consensus_7304#4 ATTCGTTAAAATTCATCTCCGACTCCTCAAAGACACACGCAA-GTTTCATTAGTGAACTG 129 * ** * ** * ** consensus_7304#1 AGCGGGAAAATGAGCCGCAGAACGAAGAACAGAACGAA-----GAAATACCGTACAAATG 392 consensus_7304#3 AGCGGGAAAAAGAGCCGCAGAACC--GCACAGAA-------------------------- 278 consensus_7304#0 CCCATCCACCACGGTTGGAGGGTGATGTGCCGGAAGGGCCACCGAAATAGGCGACCAGCG 394 consensus_7304#2 TTT-TTTGCCACTGCAATCTTCTGTTGATTCAAATAGT----GATAGTGTTTCCATGTTA 534 consensus_7304#4 TTTCTTTGCCACTGCAATATTCTGCTGATTCAAATAGT----GATAGTGTTTCTATGTTA 185 * * * consensus_7304#1 CTGTTTTACGGTGCAATGCTACAAAGATGGGTGTTTTTTGAACGG--TTTTGAACGTTTG 450 consensus_7304#3 ------------------------------------------------------------ consensus_7304#0 CTAGCTAGCCATGGGGTGGGACAAAAACCAAAGATACTCTGAGGAAATGCTGCTGCCTTG 454 consensus_7304#2 CCAACTAATGATTGCTTTGTAATAAACTTGC----------------------------- 565 consensus_7304#4 CCAACTAATTATTGCTTTGTAATAAACTTGCTACAAAATGTATAGC-------------- 231 consensus_7304#1 CAAGGTTGTGATAATAATTGCGCAAGCGAATGGTAGCGAGAGATAGAGAGAGCTGTTATA 510 consensus_7304#3 ------------------------------------------------------------ consensus_7304#0 AGCCACAGCTCCTGCGAAAGCCTCCGCAATCATCGCGGAAACGGGGGGAGACATTAACCG 514 consensus_7304#2 ------------------------------------------------------------ consensus_7304#4 ------------------------------------------------------------ consensus_7304#1 TTCTGATTATTGTTTTAGCTAGTTAAGGAATGCGAATGTGAATCGACAGTTTCGAAAGTG 570 consensus_7304#3 ------------------------------------------------------------ consensus_7304#0 GTACGCCGGGAAACAAAACAAGTTAGGGGTGTGCCGCGTTCACCCTCAGCTTCCGGGGGG 574 consensus_7304#2 ------------------------------------------------------------ consensus_7304#4 ------------------------------------------------------------ consensus_7304#1 AGGAAAATGTTAGTTGCCAAGTGAGATAATTCGTTTTGCCATCGAGTTGTACAGTGAATG 630 consensus_7304#3 ------------------------------------------------------------ consensus_7304#0 AGAGCAGCAGCGAACCTTTTTTGGCGGACGTTCTGGAACTCGCAAAACAAACGATCTGCT 634 consensus_7304#2 ------------------------------------------------------------ consensus_7304#4 ------------------------------------------------------------ consensus_7304#1 ATTGATGATTCCTTTCACT----- 649 consensus_7304#3 ------------------------ consensus_7304#0 GTATTTATATGGTTCGTTTGCTCG 658 consensus_7304#2 ------------------------ consensus_7304#4 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||