These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 917 fasta sequence [ATCCCCCNAGGTTNGTGCAGC-ATTGTGCATTTATGTAAGTAAGTCTGCTGGCAGGTGGATAAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAG-AAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGCATCGTCGATTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGA-TTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCCTGTGCCGATCGGTACATCTCGATTGAGAAGGCGGTACAGCTCGCCCGGTTGGAGGAAGAATTCCAGCAAGGCCATTGGGGTAAGGTAGAGTGGGCCCACGACATCCAGCGGCTCGATTCACAGGCTCGCCTGTCCGCCGCCGTGCTGTACATTTACTTTAACACCAGCAATGCGTTTGTGAAGGAGAAAATTTCGCTGTAAAATGGGAAAGGATGAACAAAGAAATCAAA] [+] EMBL AL934526 [ATCCCCCNAGGTTNGTGCAGC ATTGTGCATTTATGTAAGTAAGTCTGCCGGCAGGTGGATAAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAGNAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCACAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGCATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCA ] [+] EMBL CNS09HCF [ GTTTGTGCAGCAATTGTGCATTTATGTAAGTAAGTCTGCTGGCAGGTGGATAAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATTCATCGCTCGCCGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCTCAG AAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCG ATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTCGCCTCCACCGA TTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCCTGTGCCGATCGGTACATCTCGATTGAGAAGGCGGTACAGCTCGCCCGGTTGGAGGAAGAATTCCAGCAAGGCCATTGGGGTAAGGTAGAGTGGGCCCACGACATCCAGCGGCTCGATTCACAGGCTCGCCTGTCCGCCGCCGTGCTGTACATTTACTTTAACACCAGCAATGCGTTTGTGAAGGAGAAAAT ] [+] EMBL BM640644 [ ccgGTGCATTTATGTAAGTAAGTCTGCTGGCAGGTGGATAAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCTAACTTGGTTTGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTTGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAG AAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCACAGTCATTGATAATCCAAACAGTCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTGAAAAAGCTGCAGAGCCAAGAGTGGACCCCGCATCGTCGATTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGATTTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTAAGCCGTTACTTCTCGTCCTACAATACGGCCGCCCTGCACGGGTTCGTGTTTGCGGTGGACACGA ] [-] EMBL CNS09HCG [ ATCCAACTTGGTCCGCATTCATCGCTCGCCGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCTCAG AAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCG ATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTCGCCTCCACCGA TTCCCTT TGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCCTGTGCCGATCGGTACATCTCGATTGAGAAGGCGGTACAGCTCGCCCGGTTGGAGGAAGAATTCCAGCAAGGCCATTGGGGTAAGGTAGAGTGGGCCCACGACATCCAGCGGCTCGATTCACAGGCTCGCCTGTCCGCCGCCGTGCTGTACATTTACTTCAACACCAGCAATGCGTTTGTGAAGGAGAAAATTTCGCTGTAAAATGGGAAAGGATGAACAAAGAAATCAAA] consensusID : consensus_7306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence [GGCCAAGAATCGGCACGNGGTGGATAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAGAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCACAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGATTCCCTCGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAAGTTTAAGCCGTTACTTCTCCATCCTACAATACGGTCGCCCTGCACGGCTTAGTG-TTGCGGTGGACACGATCAAATCCATCATCCTGAGCGATGGCCTTGTTGGCCCTCGAATTTCACCGGGTTACCACATTCTTCGGAATTCGGAGAAACAGGGGCTTGGTTAACCAAAGGCTTTCCAGGCCCCNGGAGGCTTTTTGAAACANGAAACCAAACTTTTCCCAGAAGANAAAGGGGGAGCACAAACTTGGGAGCGNACAAAGGGTANACACAAGTGTTGGGCCGCCACAGTGACNAGATGTCCACACAGCGAGACAT] [+] EMBL BX467212 [GGCCAAGAATCGGCACGNGGTGGATAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAGAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCACAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGATTCCCTCGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAAGTTTAAGCCGTTACTTCTCCATCCTACAATACGGTCGCCCTGCACGGCTTAGTG TTGCGGTGGACACGATCAAATCCATCATCCTGAGCGATGGCCTTGTTGGCCCTCGAATTTCACCGGGTTACCACATTCTTCGGAATTCGGAGAAACAGGGGCTTGGTTAACCAAAGGCTTTCCAGGCCCCNGGAGGCTTTTTGAAACANGAAACCAAACTTTTCCCAGAAGANAAAGGGGGAGCACAAACTTGGGAGCGNACAAAGGGTANACACAAGTGTTGGGCCGCCACAGTGACNAGATGTCCACACAGCGAGACAT] [+] EMBL BX608006 [ AGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGCCAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCCCAGAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCACAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTCGCCTCCACCGATTCCCTCGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAA TTTAAGCCGTTACTTCTCC TCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGG ] consensusID : consensus_7306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATTCATCGCTCGCCGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCTCAGAAGGATGTGATTGACCGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTCGCCTCCACCGATTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCC] [+] EMBL BM585415 [CCGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATTCATCGCTCGCCGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCGGCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACACCGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAATGGGACGCTCAGAAGGATGTGATTGACCGACCGCTTTGAGCAGCACAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACTACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGCAGAGCCAAGAGTGGACCCCGATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTCGCCTCCACCGATTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAATTTGAGCCGTTACTTCTCCTCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACACGATCAAATCCATCATCTTGACGATGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7306#0 ATCCCCCNAGGTTNGTGCAGCATTGTGCATTTATGTAAGTAAGTCTGCTGGCAGGTGGAT 60 consensus_7306#2 ------------------------------------------------------------ consensus_7306#1 ----------------------------------GGCCAAGAATCGGCACGN-GGTGGAT 25 consensus_7306#0 AAGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGC 120 consensus_7306#2 CCGTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATTCATCGCTCGC 60 consensus_7306#1 A-GTAAAGAAGAAAATGCTTCGTTCGTGTCTATCCAACTTGGTCCGCATACATCGCTCGC 84 *********************************************** ********** consensus_7306#0 CAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCG 180 consensus_7306#2 CGGTACAGACAAGCATAAGAAACTATGCTGCACCACCGAAACGGTTCTACAGAAACACCG 120 consensus_7306#1 CAGTACAGACAAGCATAAGAAATTATGCTGCACCACCGAAACGGTTCTACAGAAACACCG 144 * ******************** ************************************* consensus_7306#0 GCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACAC 240 consensus_7306#2 GCGTAATATCCAGCAATGGCCGGTTCGAGATCACACTCGACAGTCGGAAGCTGAAAACAC 180 consensus_7306#1 GCGTAATCTCCAGCAATGGCCGGTTCGAAATCACACTCGACAGTCGGAAGCTGAAAACAC 204 ******* ******************** ******************************* consensus_7306#0 CGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAAT 300 consensus_7306#2 CGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAAT 240 consensus_7306#1 CGAGAGGATTACCGTTTTACGTGGAAAGTGAACCACTGGCCGTCGCGATTGCCATGGAAT 264 ************************************************************ consensus_7306#0 GGGACGCCCAGAAGGATGTGATTGACCGGTCGTCTATGCATTTGACCGCTTTGAGCAGCA 360 consensus_7306#2 GGGACGCTCAGAAGGATGTGATTGACC----------------GACCGCTTTGAGCAGCA 284 consensus_7306#1 GGGACGCCCAGAAGGATGTGATTGACCGGTCATCTATGCATTTGACCGCTTTAAGCAGCA 324 ******* ******************* ********* ******* consensus_7306#0 CAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACT 420 consensus_7306#2 CAGTCATTGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACT 344 consensus_7306#1 CAGTCATCGATAACCCGAACAGCCTGCAGAAGCATGATATGGTGAATTATTTGGTAAACT 384 ******* **************************************************** consensus_7306#0 ACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGC 480 consensus_7306#2 ACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGC 404 consensus_7306#1 ACATCAACACCGATACCGTTCTGTTCCACTCGAGTGAAGAACCAGAGCTCAAAAAGCTGC 444 ************************************************************ consensus_7306#0 AGAGCCAAGAGTGGACCCCGCATCGTCGATTGGTGCAACAAGCGGTACGAGATCAACCTC 540 consensus_7306#2 AGAGCCAAGAGTGGACCCCG-ATCGTCGATTGGTGCAACAAGCGTTACGAGATCAACCTC 463 consensus_7306#1 AGAGCCAAGAGTGGACCCCG-ATCGTCGACTGGTGCAACAAGCGGTACGAGATCAACCTC 503 ******************** ******** ************** *************** consensus_7306#0 GCCTCCACCGATTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAA-TTTGAG 599 consensus_7306#2 GCCTCCACCGATTCCCTTGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAA-TTTGAG 522 consensus_7306#1 GCCTCCACCGATTCCCTCGTGGTGCCCACGTTCGAGCCCGGCATGGCGATGAAGTTTAAG 563 ***************** *********************************** *** ** consensus_7306#0 CCGTTACTTCTCC-TCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACA 658 consensus_7306#2 CCGTTACTTCTCC-TCCTACAATACGGCCGCCCTGCACGGCTTTGTGTTTGCGGTGGACA 581 consensus_7306#1 CCGTTACTTCTCCATCCTACAATACGGTCGCCCTGCACGGCTTAGTGTT-GCGGTGGACA 622 ************* ************* *************** ***** ********** consensus_7306#0 CGATCAAATCCATCATCTTGA-CGATGGCCTGTGCCGATCGGTACATCTCGATTGAGAAG 717 consensus_7306#2 CGATCAAATCCATCATCTTGA-CGATGGCC------------------------------ 610 consensus_7306#1 CGATCAAATCCATCATCCTGAGCGATGGCCT-TGTTGGCCCTCGAATTTCACC----GGG 677 ***************** *** ******** consensus_7306#0 GCGGTACAGCTCGCCCGGTTGGAGGAAGAATTCCAGCAAGGCCATTGGGGTAAGGTAGAG 777 consensus_7306#2 ------------------------------------------------------------ consensus_7306#1 TTACCACATTCTTCGGAATTCGGAGAAA-----CAGGGGCTTGGTTAACCAAAGGCTTTC 732 consensus_7306#0 TGGGCCCACGA---CATCCAGCGGCTCGATTCACAGGCTCGCCTGTCCGCCGCCGTGCTG 834 consensus_7306#2 ------------------------------------------------------------ consensus_7306#1 CAGGCCCCNGGAGGCTTTTTGAAACANGAAACCAAACTTTTCCCAGAAGANAAAG-GGGG 791 consensus_7306#0 TACATTTACTTTAACACCAGCAATGCGTTTGTGAAGGAGAAAATTTCGCTGTAAAATGGG 894 consensus_7306#2 ------------------------------------------------------------ consensus_7306#1 AGCACAAACTTGGGAGCGNACAAAGGGTANACACAAGTGTTGGGC-CGCCACAGTGACNA 850 consensus_7306#0 AAAGGATGAACAAAGAAATCAAA 917 consensus_7306#2 ----------------------- consensus_7306#1 GATGTCCACACAGCGAGACAT-- 871 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||