These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 779 fasta sequence [CCGCCCACGCGTCCGAACATTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTGCGATACCTGGCCAACAACGAGCAGC-TGATCCAGCGGTTGGCCGACTCGTA-CCCGCTGCGCAGGG-CCGCCCAGATGGTGCTGAGCGCGTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGT-CG-CCGGAGCGGTTGCAGCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAGTGAAGTGACCGCGCGTTCCAGCGCGGATGCGCATACTAGAGACAAGCGAAGATAAAGG--GTGGGTGTATAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTTTTATTTGTCGAAAAAAAA] [+] EMBL BM601761 [CCGCCCACGCGTCCGAACATTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTGCGATACCTGGCCAACAACGAGCAGCTTGATCCAGCGGTTGGCCGACTCGTACCCCGCTGCGCAGGGCCCGCCCAGATGGTGCTGAGCGGTTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGTCCGCCCGGAGCGGTTGCAGCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAag ] [+] EMBL BX612780 [ CCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTGCGATACCTGGCCAACAACGAGCAGC TGATCCAGCGGTTGGCCGACTCGTA CCCGCTGCGCAGGG CCGCCCAGATGGTGCTGAGCGCGTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGT CG CCGGAGCGGTTGC GCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAGTGAAGTGACCGCGCGTTCCAGCGCGGATGCGCATACTAGAGACAAGCGAAGATAAAGG GTGGGTGTATAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTT ] [+] EMBL AGA285681 [ AAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTGCGATACCTGGCCA ] [+] EMBL BM601260 [ ccgGTTTGCGCAAACAGCTCGCCCTGAAGCAGCAGCTGATCAAGAAGTACAAGAACGTCCAGTTCTAGAAGCCCGAACCCGCCGCCCCGAACCGCTCTCGCGATGGTGCTGCAACTGATTCTGCGATACCTGGCCAACAACGAGCAGC TGATCCAGCGGTTGGCCGACTCGTA CCCGCTGCGCAGGG CCGCCCAGATGGTGCTGAGCGCGTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGT CG CCGGAGCGGTTGCAGCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAGTGAAGTGAGCGCGCGTTCCAGCGCGGATGCGCATACTAGAGACAAGCGAAGATAAAGGGTGTGGGTGTGTAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTTTTATTTGTCG ] [-] EMBL AGA284375 [ CTGATTCTGCGATACCTGCCCAACAACGAGCAGC TGATCCAGCGGTTGCCCGACTCGTA CCCGCTGCGCAGGG CCGCCCAGATGGTGCTGAGCGCGTACTATCGCAGTCGCTCCATTGCCGAGCAGCAGAAGCTGATCGGAATGT CG CCGGAGCGGTTGCAGCAGGCGTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGGCAAGAAAAAGTGAAGTGACCGCGCGTTCCAGCGCGGATGCGCATANTAGAGACAAGCGAAGATAAAGG GTGGGTGTATAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTTTTATTTGTCGAAAAAAAA] consensusID : consensus_7307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [GGTTAATAAAAGTCAAACATTTCTGTGGGCAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAACAAGGAAAGTGCCTGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCTGCCGCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTTGCGATACCTGGGCAACAACGAGCAGTGATCCAGCGGTTGGCGACTCGTACCCGCTGCGCAGGGGCCGCCAGATTGGTGCTTGAGCGCGTACTAATCGCAAGTCGGTCCATTGGCTGGANGCCAGGCAGGAAAGCCTGAATCCGGGCACATTGTTCCGCCCCGGCAAGACAGNGGTTTGCCAAGCAAGGGCGGTTTNNCAGCCACCTTTCCAAGTTTCGAAACGGTTGCAGCANGGAGAATCGCACAAATGTCCGNGACGAAATTGACTTTGGGGGCANAACGAAACAAGTGAAAGGTTGAA] [+] EMBL AL693759 [GGTTAATAAAAGTCAAACATTTCTGTGGGCAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAACAAGGAAAGTGCCTGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGCAGCCCGATCAACCATCCGCAAGCTGCACGGGATCGAGTACAGCAAGGAAGAGCAGCTGCGACGGCTCGAAAGTTTGCGCAAACAGCTCGCCCTGAAGCAGGCAGCTGATCAAGAAGTACAAGAACGTTCAGTTCTAGAAGCCCAAACCCTGCCGCCCGAACCGCTCTCGCGATGGTGTTGCAACTGATTCTTGCGATACCTGGGCAACAACGAGCAGTGATCCAGCGGTTGGCGACTCGTACCCGCTGCGCAGGGGCCGCCAGATTGGTGCTTGAGCGCGTACTAATCGCAAGTCGGTCCATTGGCTGGANGCCAGGCAGGAAAGCCTGAATCCGGGCACATTGTTCCGCCCCGGCAAGACAGNGGTTTGCCAAGCAAGGGCGGTTTNNCAGCCACCTTTCCAAGTTTCGAAACGGTTGCAGCANGGAGAATCGCACAAATGTCCGNGACGAAATTGACTTTGGGGGCANAACGAAACAAGTGAAAGGTTGAA] consensusID : consensus_7307#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [ATTCTCGAAGCAGAATCGGCACGAGGGTGGCCGCAACATGCCTGTTTTTTTNCTTGTTTTTTTTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAANCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGGCAGCCCGATCGAACCATCCGCAAGCTGCACGGGATCGAGTACACGCAAGGAAGAGCAGCTGNCGACGGCNTCGAAAGTTTGCGCAAACAGNTCGCCCTGAAGGCAGGCAGCTGATCAAGAAGTACAAGANACGTTCAGTTCTAGGAAGCCCAANACCCGTCGCGCCCGAAGCCGGNTACTCGGCGAGTGGTGTTGGACANGCTGATTCTGCGATTACCTG] [+] EMBL BX469337 [ATTCTCGAAGCAGAATCGGCACGAGGGTGGCCGCAACATGCCTGTTTTTTTNCTTGTTTTTTTTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAACATTCCAGAAANCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATTATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAAAAGGAAAGTGCCGAGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGGCAGCCCGATCGAACCATCCGCAAGCTGCACGGGATCGAGTACACGCAAGGAAGAGCAGCTGNCGACGGCNTCGAAAGTTTGCGCAAACAGNTCGCCCTGAAGGCAGGCAGCTGATCAAGAAGTACAAGANACGTTCAGTTCTAGGAAGCCCAANACCCGTCGCGCCCGAAGCCGGNTACTCGGCGAGTGGTGTTGGACANGCTGATTCTGCGATTACCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7307#0 -----------------------------------------CCGCCCACGCGT-CCGAAC 18 consensus_7307#2 ATTCTCGAAGCAGAATCGGCACGAGGGTGGCCGCAACATGCCTGTTTTTTTNC-TTGTTT 59 consensus_7307#1 ------------------------------------------GGTTAATAAAAGTCAAAC 18 * consensus_7307#0 ATTT--CGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAAC 76 consensus_7307#2 TTTTTTCGTGGGCAAACAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAAC 119 consensus_7307#1 ATTTC-TGTGGGCAA-CAGGAACGATGGACGCCCTCGAAACAAAACCACAAATCTGCAAC 76 *** ******** ******************************************** consensus_7307#0 ATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATT 136 consensus_7307#2 ATTCCAGAAANCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATT 179 consensus_7307#1 ATTCCAGAAACCAAAATTCAGCCCGTAGAAATCGAGATACTGCCCGTGGTGTACGACATT 136 ********** ************************************************* consensus_7307#0 ATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAA-AAGGAAAGTGCC-G 194 consensus_7307#2 ATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAA-AAGGAAAGTGCC-G 237 consensus_7307#1 ATCCGAAGTGTTGAGAAGGATCCGATAGATAACACCGCGAAACAACAAGGAAAGTGCCTG 196 ********************************************* ************ * consensus_7307#0 AGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAG-CAGCCCGATC-AACCAT 252 consensus_7307#2 AGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAGGCAGCCCGATCGAACCAT 297 consensus_7307#1 AGTGCAGCCATAAGGTCACTGAGCTTCAAAAAACACTCGAAG-CAGCCCGATC-AACCAT 254 ****************************************** ********** ****** consensus_7307#0 CCGCAAGCTGCACGGGATCGAGTACA-GCAAGGAAGAGCAGCTGC-GACGGCT-CGAAAG 309 consensus_7307#2 CCGCAAGCTGCACGGGATCGAGTACACGCAAGGAAGAGCAGCTGNCGACGGCNTCGAAAG 357 consensus_7307#1 CCGCAAGCTGCACGGGATCGAGTACA-GCAAGGAAGAGCAGCTGC-GACGGCT-CGAAAG 311 ************************** ***************** ****** ****** consensus_7307#0 TTTGCGCAAACAGCTCGCCCTGAAGC--AGCAGCTGATCAAGAAGTACAAGAA-CGTTCA 366 consensus_7307#2 TTTGCGCAAACAGNTCGCCCTGAAGGCAGGCAGCTGATCAAGAAGTACAAGANACGTTCA 417 consensus_7307#1 TTTGCGCAAACAGCTCGCCCTGAAGC-AGGCAGCTGATCAAGAAGTACAAGAA-CGTTCA 369 ************* *********** *********************** ****** consensus_7307#0 GTTCTAG-AAGCCCAAA-CCCGCCGC-CCCGAA-CCGCTCTCGCGA----TGGTGTTGCA 418 consensus_7307#2 GTTCTAGGAAGCCCAANACCCGTCGCGCCCGAAGCCGGNTACTCGGCGAGTGGTGTTGGA 477 consensus_7307#1 GTTCTAG-AAGCCCAAACCCTGCCGC--CCGAA-CCGCTCTCGCGA----TGGTGTTGCA 421 ******* ******** ** * *** ***** *** * ** ******** * consensus_7307#0 ---ACTGATTCT-GCGAT-ACCTGGCCAACAACGAGCAGCTGATCCAGCGGTTGGCCGAC 473 consensus_7307#2 CANGCTGATTCT-GCGATTACCTG------------------------------------ 500 consensus_7307#1 ---ACTGATTCTTGCGAT-ACCTGGGCAACAACGAGCAG-TGATCCAGCGGTTGGC-GAC 475 ******** ***** ***** consensus_7307#0 TCGTACCCGCTGCGCAGGGCCGCCCAGAT-GGTGCT-GAGCGCGTACTA-TCGCA-GTCG 529 consensus_7307#2 ------------------------------------------------------------ consensus_7307#1 TCGTACCCGCTGCGCAGGGGCCGCCAGATTGGTGCTTGAGCGCGTACTAATCGCAAGTCG 535 consensus_7307#0 CTCCATTGCCGAGCAGCAG---AAGCTGATCGGAATGTCGCCGGAGCGGTTGCAGCAGGC 586 consensus_7307#2 ------------------------------------------------------------ consensus_7307#1 GTCCATTGGCTGGANGCCAGGCAGGAAAGCCTGAATCCGGGCACATTGTTCCGCCCCGGC 595 consensus_7307#0 GTTGCGCAGCTTCAAGTCGAACGTGCAGAAGGAGATCGAAAATGCGAAGAATGATTTGGG 646 consensus_7307#2 ------------------------------------------------------------ consensus_7307#1 AAGACAGNGGTTTGCCAAGCAAGGGCGGTTTNNCAGCCACCTTTCCAAGTTTCGAAACGG 655 consensus_7307#0 CAAGAAAAAGTGAAGTGACCGCGCGTTCCAGCGCGGATGCGCATACTAGAGACAAGCGAA 706 consensus_7307#2 ------------------------------------------------------------ consensus_7307#1 TTGCAGCANGGAGAATCGCACAAATGTCCGNGACGAAATTGACTTTGGGGGCANAACGAA 715 consensus_7307#0 GATAAAGGGTGGGTGTATAAACTGTGCCGTGCTTCAATGTAATTAAAATTTATTTTTATT 766 consensus_7307#2 ------------------------------------------------------------ consensus_7307#1 ACAAGTGAAAGGTTGAA------------------------------------------- 732 consensus_7307#0 TGTCGAAAAAAAA 779 consensus_7307#2 ------------- consensus_7307#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||