These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 742 fasta sequence [TACGCGAGCGAGCGTGTGTGGTTGTGTGTTCAGCCGAGTAATGCTTATTTATATTCATATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA-TAACCTTAACTAGCAAAAAAAAAA--AACATACGTACCAGCGCAAAACGAAGCTCTAGCTCTCCTCTCCCGCACACACCACCATCTCAAGTCCGGCTAGCTAGTAGCGGCGCAGCTTGGACAGCGGATGTGTAATGCATATTGATTACGTGTCTTCCTACTC---CTTCCGCTTTTT-TCTCCGGTTTCAGTACGTATCCCTTTTCTTTACCGACTGTGTTTCGTCGTGCTAA-TTACGAACGTTCCACACGAAACGAAACAAAACTCCCCCCG-AAAAAAAACTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACGAAAAAAAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCCTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCGGTTACTTCGATCCGCAAAAGCTACACACA] [+] EMBL CNS09CWZ [TACGCGAGCGAGCGTGTGTGGTTGTGTGTTCAGCCGAGTAATGCTTATATATATTCATATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA TAACCTTAACTAGCAAAAA ] [+] EMBL BM589497 [ TGTGTGTTCAGCCGAGTAATGCTTATTTATATTCAAATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTA GTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA TAACCTT ] [-] EMBL BM641334 [ CAGCCGAGTAATGCTTATTTATATTCAAATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGTAACATCCATTCTATGGTATTAACCTTAACTAGCAAAAAAAAAA AACATACGTACCAGCGCAAAACGAAGCTCTAGCTCTCCTCTCCCGCACACACCACCATCTCAAGTCCGGCTAGCTAGTAGCGGCGCAGCTTGGACAGCGGATGTGTAATGCATATTGATTACGTGTCTTCCTACTC CTTCCGCTTTTT TCTCCGG ] [+] EMBL CNS0935F [ AAGGCTTATTTATATTCATATTATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA TAACCTTAACTAGC AAAAAAAA AACATACGTACCAGCGCAAAACGAAGCTCTAGCTCACCTCTCCCGCACACACCACCATCTCAAGTCCGGCTAGCTAGTAGCGGCGCA CTTGGACAGCGGGGGGGGAATGCATATTGATTACGTGTCTTCCTACTCCTTCTTCCGCTTTTTCTCTCC TTTCAGTACGTATCCCTTTTCTTTACCGACTGTGTTTCGTCGTGCTAA TTACGAACGTTCCACACGAAACGAAACAAAACTCCCCCCG AAAAAAAACTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACGAAAAAAAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGTACTTCTC ] [-] EMBL BX624458 [ TAGTAGAGATAGTTCCAGAAGTAGTAGTAGTAGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATAATCGCAACATCCATTCTATGGTA TAACCTTAACTAGCAAAAAAAAAAAGAACATACGTACCAGCGCAAAACGAAGCTCTAGCTCTCCTCTCCCGCACACACCACCATCTCAAGTCCGACTAGCTAGTAGCGGCGCAGCTTGGACAGCGGATGTGTAATGCATATTGATTACGTGTCTTCCTACTC CTTCCGCTTTTT TCTCTCCTTTCAGTACGTATCCCTCTTCTTTACCGACTGTGTTTCGTCGTGCTAAGCTACGAACGTTCCACACGAAACGAAACAAAACTCCCCCCGAAAAAAAAACTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACG AAAAAAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCNTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGCNCTTCTCTCCTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCGGTTACTTCGATCCGCAAAAGCTACACACA] consensusID : consensus_7316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCCAGTTCTAGTGGTATTAAACCGTGTAGNTAGCGTTATGTGTGAATGAGCATAGCGTAGCCAGGCGCATANTGGCGGANGCTCTTAGCNTCTCGCTNTGCCCCGCACAACAGGCAGCGCAGTGCGTGCAAGGTTCCGATCGTAGGGCTAGGTAGGCGGGCGCAGCTGTGGACAGCGGATGTGTAATGCATAGTGGANTACGTGTCTTCCTACTCGNTTCNGCGTGTGTGGTTNCGTGCGTCCGGTGTCAGTACGTATCCCTCTTCTTGTACCGACTGTGTTTCGTCGTGCTAAGCTACGAACGTTCGCACACGTAAACGAAACNNGACTCCCCGCCGANNGAGNGNAGAAGCTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACGAAAAAAAAAGAATGAAAAGAAGCTACACTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTGTTCCCCTGCTTTTTGTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCACTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCAGGTTACTTCGATCCGCAAAAGCTACACACACCGTCGCCGTGCGGCTTTCTATTTTAACCTC] [-] EMBL AL934582 [CCCAGTTCTAGTGGTATTAAACCGTGTAGNTAGCGTTATGTGTGAATGAGCATAGCGTAGCCAGGCGCATANTGGCGGANGCTCTTAGCNTCTCGCTNTGCCCCGCACAACAGGCAGCGCAGTGCGTGCAAGGTTCCGATCGTAGGGCTAGGTAGGCGGGCGCAGCTGTGGACAGCGGATGTGTAATGCATAGTGGANTACGTGTCTTCCTACTCGNTTCNGCGTGTGTGGTTNCGTGCGTCCGGTGTCAGTACGTATCCCTCTTCTTGTACCGACTGTGTTTCGTCGTGCTAAGCTACGAACGTTCGCACACGTAAACGAAACNNGACTCCCCGCCGANNGAGNGNAGAAGCTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAACGAAAAAAAAAGAATGAAAAGAAGCTACACTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTGTTCCCCTGCTTTTTGTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCACTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCAGGTTACTTCGATCCGCAAAAGCTACACACACCGTCGCCGTGCGGCTTTCTATTTTAACCTC] consensusID : consensus_7316#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [TTTTTTTTTCTCTTTTTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAAACGAAAAACAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCCTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCGGTTACTTCGATCCGCAAAAGCTACACACACCGTCGCCGTGCGGCTTTCTATTTCTCTACTCCGGACACACACTCCCACCCTCCTCTCACACCTTCTTGCCGCTGGCTGCACTATAGTTTGGGCCTTCTTCTTGTTCTCCCATTTCTCACANTCGTGCGGAATTCTTGCC] [-] EMBL BX468018 [TTTTTTTTTCTCTTTTTCTATTCCCTGCTGCTCGCTCTGTGTAGCCGTAACGGATGAATAAAACAAAACGAAAAACAAAAAGAATGAAAAGAAGCTACCTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTTTCTGTTGCTTTTTTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCCTGCTTCATGCCCAACTTCTGCGTTGCATTCACGGGTCCGCGGTTACTTCGATCCGCAAAAGCTACACACACCGTCGCCGTGCGGCTTTCTATTTCTCTACTCCGGACACACACTCCCACCCTCCTCTCACACCTTCTTGCCGCTGGCTGCACTATAGTTTGGGCCTTCTTCTTGTTCTCCCATTTCTCACANTCGTGCGGAATTCTTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7316#1 ------------------------------------------------------------ consensus_7316#2 ------------------------------------------------------------ consensus_7316#0 TACGCGAGCGAGCGTGTGTGGTTGTGTGTTCAGCCGAGTAATGCTTATTTATATTCATAT 60 consensus_7316#1 ------------------------------------------------------------ consensus_7316#2 ------------------------------------------------------------ consensus_7316#0 TATTCCATAAACAATAGTACAGAGTAGATTAGTAGAGATAGTTCCAGAAGTAGTAGTAGT 120 consensus_7316#1 -----------------CCCAGTTCTAGTGGTATTAAACCGTGTAGNTAGCGTTATGTGT 43 consensus_7316#2 ------------------------------------------------------------ consensus_7316#0 AGTAGTAGTTGGTAGTTGGTAGTACACATGTGTTTTCAATACATA-ATCGCAACATCCAT 179 consensus_7316#1 GAATGAGCATAGCGTAGCCAGGCGCATANTGGCGGANGCTCTTAGCNTCTCGCTNTGCCC 103 consensus_7316#2 ------------------------------------------------------------ consensus_7316#0 TCTATGGTATAACCTTAACTAGCAAAAAAAAA-AAACATACGTACCAGCGCAAAACGAAG 238 consensus_7316#1 CGCACAACAGGCAGCGCAGTGCGTGCAAGGTTCCGATCGTAGGGCTAGGTAGGCGGGCGC 163 consensus_7316#2 ------------------------------------------------------------ consensus_7316#0 CTCTAGCTCTCCTCTCCCGCACACACCACCATCTCAA-GTCCGGCTAGCTAGTAGCGGCG 297 consensus_7316#1 AGCTGTGGACAGCGGATGTGTAATGCATAGTGGANTACGTGTCTTCCTACTCGNTTCNGC 223 consensus_7316#2 ------------------------------------------------------------ consensus_7316#0 CAGCTTGGACAGCGGATGTGTAATGCATATTG-ATTACGTGTCTTCCTACTCCTTCCG-- 354 consensus_7316#1 GTGTGTGGTTNCGTGCGTCCGGTGTCAGTACGTATCCCTCTTCTTGTACCGACTGTGTTT 283 consensus_7316#2 ------------------------------------------------------------ consensus_7316#0 ---------CTTTTTTCTCCGGTTTCAGTACGTATCCCTTTTCTT-TACCGACTGTGTTT 404 consensus_7316#1 CGTCGTGCTAAGCTACGAACGTTCGCACACGTAAACGAAACNNGACTCCCCGCCGANNGA 343 consensus_7316#2 ------------------------------------------------------------ consensus_7316#0 CGTCGTGCTAA-TTACGAACGTTC-CACACG-AAACGAAACAAAACTCCCCCC------- 454 consensus_7316#1 GNGNAGAAGCTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCT 403 consensus_7316#2 ----------------------TTTTTTTTTCTCTTTTTCTATTCCCTGCTGCTCGCTCT 38 consensus_7316#0 GAAAAAAAACTGATTATAACGATCCGGGGCTTGAAGACTCTATTCCCTGCTGCTCGCTCT 514 * * ********************** consensus_7316#1 GTGTAGCCGTAACGGATGAATAAAACAAA-CGAAAAA--AAAAGAATGAAAAGAAGCTAC 460 consensus_7316#2 GTGTAGCCGTAACGGATGAATAAAACAAAACGAAAAACAAAAAGAATGAAAAGAAGCTAC 98 consensus_7316#0 GTGTAGCCGTAACGGATGAATAAAACAAA-CGAAAAAAAAAAAGAATGAAAAGAAGCTAC 573 ***************************** ******* ********************* consensus_7316#1 ACTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGTGTTCCCCTGCTTTT 520 consensus_7316#2 -CTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGT-TTCTGTTGCTTTT 156 consensus_7316#0 -CTAACCAGAAGAGAACCTTTCCTTGCACCCAAGCGCACTTAAAGT-TTCTGTTGCTTTT 631 ********************************************* *** ******* consensus_7316#1 TGTTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTCACTGCTTCATGCCCAACTT 580 consensus_7316#2 T-TTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTC-CTGCTTCATGCCCAACTT 214 consensus_7316#0 T-TTCTATTAATCTGTACAAATCGCATACTGTACTTCTCTC-CTGCTTCATGCCCAACTT 689 * *************************************** ****************** consensus_7316#1 CTGCGTTGCATTCACGGGTCCGCAGGTTACTTCGATCCGCAAAAGCTACACACACCGTCG 640 consensus_7316#2 CTGCGTTGCATTCACGGGTCCGC-GGTTACTTCGATCCGCAAAAGCTACACACACCGTCG 273 consensus_7316#0 CTGCGTTGCATTCACGGGTCCGC-GGTTACTTCGATCCGCAAAAGCTACACACA------ 742 *********************** ****************************** consensus_7316#1 CCGTGCGGCTTTCTATTTTA--ACCTC--------------------------------- 665 consensus_7316#2 CCGTGCGGCTTTCTATTTCTCTACTCCGGACACACACTCCCACCCTCCTCTCACACCTTC 333 consensus_7316#0 ------------------------------------------------------------ consensus_7316#1 ------------------------------------------------------------ consensus_7316#2 TTGCCGCTGGCTGCACTATAGTTTGGGCCTTCTTCTTGTTCTCCCATTTCTCACANTCGT 393 consensus_7316#0 ------------------------------------------------------------ consensus_7316#1 -------------- consensus_7316#2 GCGGAATTCTTGCC 407 consensus_7316#0 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||