These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1124 fasta sequence [CCGGGTGACGGGACCGACTGCGGCCATCCTCAGCTGGAACCCGGTGACGCCCGAATCGCTGCGCGGCCACTTCAAGGGCTACAAGATCCAAACCTGGACCGAGGCGGACGGCGAGGAGAACCTGCGCGAGATACTGATCACCGCCGACTCGAAGCAGGCGCTCGTGACGGACTTCGTGCCGGACGCGACCAACTACGCCCGCATCCTCGCGTACAACGGCCGGTACAACGGGCCGGCCAGCACGACGCTGTCGTTCGACACGCCCG-GGGCGTGCCGAACACGATCCAGGCGCTCGAGGCGTACCCGCTCGGGTCGTCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAACCGAACGGCAAGCTCACCGGCTACCGGATCTACTACGA-GGAGGTGAAGGGCACGACGGTGGGCCCGCGGATGGAGCGCGAACCGCACATCTCCGATCCGGCCGTGCTGG-AGGCGAAA-CTGGGCCGCCTGAAGCCGGCTGCCAAGTA-TCGTATTCACGTCGTCGCCACCACCAAGGCTGGCGAAGGTCAAGACTTCTACATCGAGCGGGCCACCTCGTCCGGTCTGGGTCTGCCACCGGACGTACCCAACTTCTACTGGGAAAACATCCGGTCGGAGAACGGGCTCGCCAACATCAAGGTGGTGTGGCAGCCGGCCCTCGGCGGCAAGGCTGGCTCGCACTTCTACGTCAAGTACCGCGTCAAGGACGAATCGAGCTGGCAGACGACCGATCCGGAGCTGTACGAAAACTATCTGATCGTGCACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCT-GGTTCATCGGCATGATGCT--GGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACGTGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGGAGTACTCGCAACCTTTGGACAATAAAAGCCAGGGCCGACAATCGCTGAACTC] [+] EMBL BM605648 [CCGGGTGACGGGACCGACTGCGGCCATCCTCAGCTGGAACCCGGTGACGCCCGAATCGCTGCGCGGCCACTTCAAGGGCTACAAGATCCAAACCTGGACCGAGGCGGACGGCGAGGAGAACCTGCGCGAGATACTGATCACCGCCGACTCGAAGCAGGCGCTCGTGACGGACTTCGTGCCGGACGCGACCAACTACGCCCGCATCCTCGCGTACAACGGCCGGTACAACGGGCCGGCCAGCACGACGCTGTCGTTCGACACGCCCGAGGGCGTGCCGAACACGATCCAGGCGCTCGAGGCGTACCCGCTCGGGTCGTCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAACCGAACGGCAAGCTCACCGGCTACCGGATCTACTACGAGGGAGGTGAAGGGCACGACGGTGGGCCCGCGGATGGAGCGCGAACCGCACATCTCCGATCCGGCCGTGCTGGAAGGCGAAAGCTGGGCCGCCTGAAGCCGGCTGCCAAGTATTCGTATTCACGTCGTCGCCACCACCAGGG ] [+] EMBL BM631547 [ ccACGCGTCCG GGGCGTGCCGAACACGATCCAGGCGCTCGAGGCGTACCCGCTCGGGTCGTCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAACCGAACGGCAAGCTCACCGGCTACCGGATCTACTACGA GGAGGTGAAGGGCACGACGGTGGGCCCGCGGATGGAGCGCGAACCGCACATCTCCGATCCGGCCGTGCTGG AGGCGAAA CTGGGCCGCCTGAAGCCGGCTGCCAAGTA TCGTATTCACGTCGTCGCCACCACCAAGGCTGGCGAAGGTCAAGACTTCTACATCGAGCGGGCCACCTCGTCCGGTCTGGGTCTGCCACCGGACGTACCCAACTTCTACTGGGAAAACATCCGGTCGGAGAACGGGCTCGCCAACATCAAGGTGGTGTGGCAGCCGGCCCTCGGCGGCAAGGCTGGCTCGCACTTCTACGTCAAGTACCGCGTCAAGGACGAATCGAGCTGGCAGACGACCGATCCGGAGCTGTACGAAAACTATCTGATCGTGCACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCTGGGTTCATCGGCATGATGCTTGGGCG ] [+] EMBL BM601113 [ ccgCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAACCGAACGGCAAGCTCACCGGCTACCGGATCTACTACGA GGAGGTGAAGGGCACGACGGTGGGCCCGCGGATGGAGCGCGAACCGCACATCTCCGATCCGGCCGTGCTGG AGGCGAAG CTGGGCCGCCTGAAGCCGGCTGCCAAGTA TCGTATTCACGTCGTCGCCACCACCAAGGCTGGCGAAGGTCAAGACTTCTACATCGAGCGGGCCACCTCGTCCGGTCTGGGTCTGCCACCGGACGTACCCAACTTCTACTGGGAAAACATCCGGTCGGAGAACGGGCTCGCCAACATCAAGGTGGTGTGGCAGCCGGCCCTCGGCGGCAAGGCTGGCTCGCACTTCTACGTCAAGTACCGCGTCAAGGACGAGTCGAGCTGGCAGACGACCGATCCGGAGCTGTACGAAAACTATCTGATCGTGCACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCT GGTTCATCGGCATGATGCT GGCGATCGCGTTCCTCATACT ] [+] EMBL AGA282565 [ AGCTGTACGAAAACTATCTGATCGTGCACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCT GGTTCATCGGCATGATGCT GGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACGTGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGGAGTACTCGCAACCTTTGGACAATAAAAGCCAGGGCCGACAATCGCTGAACTC] consensusID : consensus_7319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1050 fasta sequence [CCGGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCTGGTTCATCGGCATGATGCTGGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACGTGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGGAGTACTCGCAACCAAGGTATGAATGAGGACGGTTCCTTCATTGGGCAGTACGGCCGGAAGGGTGGCAAAAACGCGGATAGCAATTCGCAGGCGTTCGCAACACTAGTTTAGTGAGGGATGCGTGTGTGTGGTTTTTTTAGGAAAAAAAATCGTTGTAGAGCTACATCACTTCTTCTTTTTTTGTCCAAACCGCCTTTCTAGCGTGTATACGTACGCGCTTACCTTTCTCCCTTTTTTTACCCGCGCAACAGTAGCGTACAGATTGTAGAGTAAATGTGGATTGGAAACGAAAGCCGAATTCATGTTAGCGATACGAAAGAAGAATGTATTAGGATTAAAAAAAAAGGTAACAGGAACGGCGAGAGTTGGGAAAAGGGGGAGTATGATTAAGGGACAGTTACAGGTCAAAAGCCCCGTTCAAAAAGGCTAATTTGAAAATTTTGTACCGAAATGATGATGTTCTCCAACATCGATTCTCTGTAATTATGGATTGAGTTTCAAAGCTCACTAAAACAAACTTATAAAATCCACAACCGCTGCTCTCCTTTCCCACCTCTCCCCACACATCAACTCTCCCTCCAACTGCGTCGAACTAGTTTTTTTGCGCAATAAAAAAGAAATAAGAAAGCCACTACACTAGCTAGTAAGCGATCGAAGCGATGAAAAATGGCCTCAATAAAAACGGGCTGGGGTAGAATATTGGTGTGTTAGTCCGGGAACCGCACGATGATACCCCTTTTTTATCTCTCCGGCCACCTCTCGGCCGGCGGATGGGAAGGAAAAAAAA] [+] EMBL BM605860 [CCGGTCGGTCGACGGCGAATATCAGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCTGGTTCATCGGCATGATGCTGGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACGTGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGGAGTACTCGCAACCAAGGTATGAATGAGGACGGTTCCTTCATTGGGCAGTACGGCCGGAAGGGTGGCAAAAACGCGGATAGCAATTCGCAGGCGTTCGCAACACTAGTTTAGTGAGGGATGCGTGTGTGTGGTTTTTTTAGGAAAAAAAATCGTTGTAGAGCTACATCACTTCTTCTTTTTTTGTCCAAACCGCCTTTCTAGCGTGTATACGTACGCGCTTACCTTTCTCCCTTTTTTTACCCGCGCAACAGTAGCGTACAGAT ] [+] EMBL BM601571 [ ccgGGTTCCTTCATTGGGCAGTACGGCCGGAAGGGTGGCAAAAACGCGGATAGCAATTCGCAGGCGTTCGCAACACTAGTTTAGTGAGGGATGCGTGTGTGTGGTTTTTTTAGGAAAAAAAATCGTTGTAGAGCTACATCACTTCTTCTTTTTTTGTCCAAACCGCCTTTCTAGCGTGTATACGTACGCGCTTACCTTTCTCCCTTTTTTTACCCGCGCAACAGTAGCGTACAGATTGTAGAGTAAATGTGGATTGGAAACGAAAGCCGAATTCATGTTAGCGATACGAAAGAAGAATGTATTAGGATTAAAAAAAAAGGTAACAGGAACGGCGAGAGTTGGGAAAAGGGGGAGTATGATTAAGGGACAGTTACAGGTCAAAAGCCCCGTTCAAAAAGGCTAATTTGAAAATTTTGTACCGAAATGATGATGTTCTCCAACATCGATTCTCTGTAATTATGGATTGAGTTTCAAAGCTCACTAAAACAAACTTATAAAATCCACAACCGCTGCTCTCCTTTCCCACCTCTCCCCACACATCAACTCTCCCTCCAACTGCGTCGAACTAGTTTTTTTGCGCAATAAAAAAGAAATAAGAAAGCCACTACACTAGCTAGTAAGCGATCGAAGCGATGA ] [-] EMBL AGA280936 [ CCGCTGCTCTCCTATCCCACCTATCCCCACACATCAACTCTCCCACCAACTGAGTCGAACTAGTTTTTTTGCGCAATAAAAAAGAAATAAGAAAGCCACTACCCTAGCTAGTAAGAGATCGAAGCGATGAAAAATGGCCTCAATAAAAACGGGCTGGGGTAGAATATTGGTGTGTTAGTCCGGGAACCGCACGATGATACCCCTTTTTTATCTCTCCGGCCACCTCTCGGCCGGCGGATGGGAAGGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7319#0 CCGGGTGACGGGACCGACTGCGGCCATCCTCAGCTGGAACCCGGTGACGCCCGAA-TCGC 59 consensus_7319#1 --------CCGGTCGGTCGACGGCGAATATCAGACGGAATC-GGCCACGCAGGAAGTCGA 51 * ** * * * **** * **** **** * ** **** *** *** consensus_7319#0 TGCGCGGCCACTTCAAGGGCTAC---AAGATCCAAACCTGGACCGAGGCGGACGGCGAGG 116 consensus_7319#1 CAC-CTACGGCATCCAGAGCTCCGTGAAGGTGCCGGGCGATAACATTGCGACGGCCGGCT 110 * * * * ** ** *** * *** * * * * * *** * ** consensus_7319#0 AGAACCTGCGCGAGATACTGATCACCGCCGACTCGAAGCAGGCGCTCGTGACGGACTTCG 176 consensus_7319#1 GGTTCATCGGCATGATGCTGGCGATCGCGTTCCTCATACTGGTGCTGATCATCATCTGCA 170 * * * ** *** *** * *** * * * ** *** * * ** * consensus_7319#0 TGCCGGACGCGACCAACTACGCCCGCATCCTCGCGTACAACGGCCGGTACAACGGGCCGG 236 consensus_7319#1 TCGTGAA-GCG--CAACCGGGGCGGCAA------ATACGACGTGCACGATCGGGAGCTGG 221 * * * *** **** * * *** *** *** * * * ** ** consensus_7319#0 CCAGCACGACGCTGTCGTTCGACACGCCCGGGGCGTGCCGAACACGATCCAGGCGCTCGA 296 consensus_7319#1 CCAACG-GCCGCAACGACTACAC-CGAGGAGGGCG-GCTTCCCGGAGTACTCGCAACCAA 278 *** * * *** * ** ** ***** ** * * * ** * * consensus_7319#0 GGCGT--ACCCGCTCGGGTCGTCCGCGTTCCTGCTGCGCTGGAAGAAACCGCTGCAAC-C 353 consensus_7319#1 GGTATGAATGAGGACGGTTCCTTCATTGGGCAGTACGGCCGGAAGGG-TGGCAAAAACGC 337 ** * * * *** ** * * * * ** ***** ** *** * consensus_7319#0 GAACGGCAAGCTCACCGGCTACCGGATCTACTACGAGGAGGTGAAGGGCACGACGGTGGG 413 consensus_7319#1 GGATAGCAA-TTCGCAGGCGTTCGCAAC-ACTA--GTTTAGTGAGGGATGCGTGTGTGTG 393 * * **** ** * *** ** * * **** **** ** ** *** * consensus_7319#0 CCCGCGGATGGAGCGCGAACCGC-ACATCTCCGATCCGGCCGTGCTGGAGGCGAAACTGG 472 consensus_7319#1 GTTTTTTTAGGAAAAAAAATCGTTGTAGAGCTACATCACTTCTTCTTTTTTTGT--CCAA 451 *** ** ** * * * * ** * * consensus_7319#0 GCCGCCTGAAGCCGGCTGCCAAGTATCGTATTCACGTCGTCGCCACCACCAAGGCTGGCG 532 consensus_7319#1 ACCGCCTTTCTAGCGTGTATACGTA-CGCGCTTACCTTTCTCCCTTTTTTTACCCGCGCA 510 ****** * * *** ** * ** * ** * * ** consensus_7319#0 AAGGTCAAGACTTCTACATCGAGCGGGCCACCTCGTCCGGTCTGGGTCTGCCACCGGACG 592 consensus_7319#1 ACAGT---AGCGTACAGATTGTAGAGTAAATGTGGATTGGAAACGAAAGCCGAATTCATG 567 * ** * * * ** * * * * * ** * * * * * consensus_7319#0 TACCCAACTTCTACTGGGAAAACATCCGGTCGGAGAACGGGCTCGCCAACATCAAGGTGG 652 consensus_7319#1 TTAGCGATACGAAAGAAGAATGTATTAGGATTAAAAAAAAAGGTAACAGGAACGGCGAGA 627 * * * * *** ** ** * ** ** * * * * consensus_7319#0 TGTGGCAGCCGGCCCTCGGCGGCAAGGCTGGCTCGCACTTCTACGTCAAGTACCGCGTCA 712 consensus_7319#1 GTTGGGAAAAGG-----GGGAGTATGATTAAGGGACAGTTACAGGTCAAAAGCCCCGTTC 682 *** * ** ** * * * * ** ** * ***** ** *** consensus_7319#0 AGGACGAATCGAGCTGGCAGACGACCGATCCGGAGCTGTACGAAAACTATCTGATCGTGC 772 consensus_7319#1 AAAAAGGCT--AATTTGAAAATT------------TTGTACCGAAATGA--TGATGTTCT 726 * * * * * * * * * ***** *** * **** * consensus_7319#0 ACGGCATCAACCCGGACCATCTGTACGAGTTCCGGGTCGTGTCGGTCGACGGCGAATATC 832 consensus_7319#1 CCAACATCGATTCT--CTGTAATTATGGATTGAGTTTCAAAGCTCACTAAAACAAACTT- 783 * **** * * * * ** * ** * ** * * * * ** * consensus_7319#0 AGACGGAATCGGCCACGCAGGAAGTCGACACCTACGGCATCCAGAGCTCCGTGAAGGTGC 892 consensus_7319#1 --ATAAAATCCACAACCGCTGCTCTCCTTTCCCACCTCTCCCCACACATC---AACTCTC 838 * **** * ** * ** ** ** * ** * * ** * consensus_7319#0 CGGGCGATAACATTGCGACGGCCGGCTGGTTCATCGGCATGATGCTGGCGATCGCGTTCC 952 consensus_7319#1 CCTCCAACTGCGTCGAACTAGTTTTTTTGCGCAATAAAAAAGAAATAAGAA----AGCCA 894 * * * * * * * * * ** * * * * consensus_7319#0 TCATACTGGTGCTGATCATCATCTGCATCGTGAAGCGCAACCGGGGCGGCAAATACGACG 1012 consensus_7319#1 CTACACTA--GCTAGTAAGCGATCGAA--GCGATGAAAAATGGCCTCAATAAAAACGGGC 950 * *** *** * * * * * * ** * ** * * *** *** consensus_7319#0 TGCACGATCGGGAGCTGGCCAACGGCCGCAACGACTACACCGAGGAGGGCGGCTTCCCGG 1072 consensus_7319#1 TGG--GGTAGAATATTGGTGTGTTAGTCCGGGAACCGCAC-GATGATACCCCTTTTTTAT 1007 ** * * * *** * ** *** ** ** * ** consensus_7319#0 AGTACTCGCAACCTTT-GGACAATAAAAGCCAGGGCCGACAATCGCTGAACTC 1124 consensus_7319#1 CTCTCCGGCCACCTCTCGGCCGGCGGATGGGAAGGAAAAAAAA---------- 1050 * ** **** * ** * * * * ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||