These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1791 fasta sequence [CCGCCCACGCGTCCGCACCCAAGCTGAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCTCGGTCTGGGCGATATCGTGATG-CGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGG-CGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGG-ACAG-CTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTGCGACGCATGTGGAGTGAACCGTTCATCATCCAACAAGCTTCGAAGCAGCTAGAGGTATAAACCACACTGATCACATGCTCTCCACGGAAGCGAATACAATACAGCAACACACAATCTGTACGCAAAATAGTATTAAGTGCAACTAACTACACAAACACACGTACACGGGGCGAACGATCGATCGTAGTAGTGTACTAGGAAAAGGATTACTACTATAACTACTACTGCAATTATATGCAACCGTACATAGCGTATCTCATGCTGGTACCGCCCAACTGACGGTACCGGGCCGAAGGGGGGAAAGTCAATAAGTGGGCAGTGTGGATATGCCGAGATTGAACAAAACTCTTGAACAAAGATCCCTTTTTCTAGTACACACCCCCCTTTCCTGGAAAGCACTCGAGACCAGCACGGGAAATACCTTCCGGGCACGGTAGCAGCAGTGTAGGTTTAGATTGTGGTTAGGTTTAACGTGACGGGAAGGGAGCGAATGCAAGCAACAGGGGTGGACGGCGATATGGCACGAATGAATCATTTAAGGTAGTTTAACAATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGTGTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGC--AAAACGTTCGCTAATCAAAACGAGCAGAGACGACAGAGTGTCGTCGGTACAGGTGTACGCTCGGGCGCGCGGACGTACGAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACAACCCACTTTCCTATGCATATTACACCAACGAACGATTCATACACGCCTGGTGAGTCACGTTGCAGCGCGCAGTGCACGCTTCCGTTGACTTGCCTGCCGCCTACTACCTGCTATACCGGATAAAGGTGTGTTCTTTTGTTTTTGCGCGCGACAGACATTTGTGTTTTTTTTTCTAATCGCGCAGCTTTTGTCTCTCGCTATCTCTCGCTATCTCTCTATCACTCTTTCCGTCTCTCTTTTCTCTTCCCGGAGGAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTACCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAGCGCAGTACTGTTTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCCGAATTTTTGAGTAGGTGCGAATTGGTATAGATGTATCACATTATACCCGGGTTAGCAAAGGATATACAATTTGCTCTCATACAAAAAAACAAATGTTAAAACTATCATGTAAAAACTGAACGTACCTATGCGACGCACCACACCAGCACTGCTTGCATCTGCATATGCTGGTTCATCTTTGGCCTGTAAGACAAAATTGGATACTAAAACGAAAAAC] [+] EMBL BM636508 [CCGCCCACGCGTCCGCACCCAAGCTGAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCTCGGTCTGGGCGATATCGTGATGCCGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGGCCGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGGCACAGCCTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTGCGACGCATGTGGAGTGAACCGTTCATCATCCAACAAGCTTCGAAGCAGCTAGAGGTATAAACCACACTGATCACATGCTCTCCACGGAAGCGAATAC ] [+] EMBL AL930961 [ cgTATCGTGATG CGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGG CGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGG ACAG CTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTGCGACGCATGTGGAGTGAACCGTTCATCATCCAACAAGCTTCGAAGCAGCTAGAGGTATAAACCACACTGATCACATGCTCTCCACGGAAGCGAATACAATACAGCAACACACAATCTGTACGCAAAATAGTATTAAGTGCAACTAACTACACAAACACACGTACACGGGGCGAACGATCGATCGTAGTAGTGTACTAGGAAAAGGATTACTACTA ] [+] EMBL BX625761 [ CAAACACACGTACACGGGGCGAACGATCGATCGTAGTAGTGTACTAGGAAAAGGATTACTACTATAACTACTACTGCAATTATATGCAACCGTACATAGCGTATCTCATGCTGGTACCGCCCAACTGACGGTACCGGGCCGAAGGGGGGAAAGTCAATAAGTGGGCAGTGTGGATATGCCGAGATTGAACAAAACTCTTGAACAAAGATCCCTTTTTCTAGTACACACCCCCCTTTCCTGGAAAGCACTCGAGACCAGCACGGGAAATACCTTCCGGGCACGGTAGCAGCAGTGTAGGTTTAGATTGTGGTTAGGTTTAACGTGACGGGAAGGGAGCGAATGCAAGCAACAGGGGTGGACGGCGATATGGCACGAATGAATCATTTAAGGTAGTTTAACAATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGTGTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGCAGAAAACGTTCGCTAATCAAAACGAGCAGAGACGACAGAGTGTCGTCGGTACAGGTGTACGCTCGGGCGCGCGCACGTACGAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACNACCCACTTTCCTATGCATATTACACCAACGAACGATTCATACACGCCTGGTGAGTCACGTTGCAGCGCGCAGTGCACGCTTCCGTTGACTTGCCTGCCGCCTACTACCTGCTATACCGGA ] [+] EMBL CNS08WIE [ ggggctggGAGA CAGCACGGGAAATACCTTCCGGGCACGGTAGCAGCAGTGTAGGTTTAGATTGTGGTTAGGTTTAACGTGACGGGAAGGGATCGAATGCAAGCGACAGGGGCGGGCGGCGACATGGCACGAATGAATCATTTAAGGTAGTTTAACAATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGTGTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGC AAAACGTTCGCTAATCAAAACGAGCAGAGACGACAGAGTGTCGTCGGTACAGGTGTACGCTCGGGCGCGCGGACGTACGAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACAACCCACTTTCCTATGCATATTACACCAACGAACGATTCATACACGCCTGGTGAGTCACGTTGCAGCGCGCAGTGCACGCTTCCGTTGACTTGCCTGCCGCCTACTACCTGCTATACCGGATAAAGGTGTGTTCTTTTGTTTTTGCGCGCGACAGACATTTGTGTTTTTTTTTCTAATCGCGCA CTTTTGTCTCTCGCTATCTCTCGCTATCTCTCTATCACTCTTTCCGTCTCTCTTTTCTCTTCCCGGA GAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTACCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAACGCAGTACTGTTTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCCGAATTTTTGAGTAGGTGCGAATTGGTATAGATGTATCACATTATACCCGGGTTAGCAAAGGATATACAATTTGCTCTCATACAAAAAAACAAATGTTAAAACTATCATGTAAAAACTGAACGTACCTATGCGACGCACCACACCAGCACTGCTTGCATCTGCATATGCTGGTT ] [-] EMBL CNS08WIF [ AAGGTAGTTTAACAATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGTGTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGC AAAACGTTCGTTTTTCAAAACGAGCAGAGACGACAAAGTGTCGTCGGAACAGGTGTACGCTCGGGCGCGCGAACGTACGAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACAACCCACTTTCCTATGCATATTACACCAACGAACGATTAATACACGCCTGGTAAGTCACGTTGCAGCGCGCAGTGCACGCTTCCGTTAACTTGCCTGCCGCCTACTACCTGCTATACCGGATAAAGGTGTGTTCTTTTGTTTTTGCGCGCAACAGACATTTGTGTTTTTTTTTCTAATCGCGCAGCTTTTTTCTCTCGCTATCTCTCGCTATCTCTCTATAACTCTTTCCGTCTCTCTTTTCTCTTCCCGGAGGAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTACCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAGCGCAGTACTTTTTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCCGAATTTTTGAGTAGGTGCGAATTGGTATAGATGTATCACATTATCCCCGGGTTAGCAAAGGATATACAA TTGCTCTCATACAAAAAAACAAATGTTAAAACTATCATGTAAAAACTGAACGTACCTATGCGACGCACCACACCAGCACTGCTTGCATCTGCATATGCTGGTTCATCTTTGGCCTGTAAGACAAAATTGGATACTAAAACGAAAAAC] [-] EMBL BM643140 [ GCGCGCGACAGACATTTGTG TTTTTTTCTAATCGCGCAGCTTTTGTCTCTCGCTGTCTCTCGCTTTCTCTCTATCACTCTTTCCGTCTCTCTTTTCTCTTCCCGGAGGAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTACCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAGCGCAGTACTGTTTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCTGAATTTTTGAGTAGGTGCGAATTGGTATAGATGTATCGCATTATACCCGGGTTAGCAAAGGATATACAATTgc ] consensusID : consensus_7322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [CCGGTCGACGCTGCTGCTGACCGGGCTGCTCATCTACGACGTGTTTTGGGTGTTCTTTTCCTCGTACATCTTCAGCACGAACGTGATGGTGAAGGTGGCGACCCGGCCGGCCGACAATCCGGTCGGCATTGTGGCGCGCAAGCTGAACCTGGGCGGCATCGTGAAGGAACCGCCCAAGCTGAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCTCGGTCTGGGCGATATCGTGATGCCGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGGCCGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGGCACAGCCTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTACGACGCATGTGGGAG] [+] EMBL BM580752 [CCGGTCGACGCTGCTGCTGACCGGGCTGCTCATCTACGACGTGTTTTGGGTGTTCTTTTCCTCGTACATCTTCAGCACGAACGTGATGGTGAAGGTGGCGACCCGGCCGGCCGACAATCCGGTCGGCATTGTGGCGCGCAAGCTGAACCTGGGCGGCATCGTGAAGGAACCGCCCAAGCTGAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCTCGGTCTGGGCGATATCGTGATGCCGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGCTTACAAAAAGTCCCAGTCCACCCAGACGGCCGAGGCCGGCGTTCCACCACCGAAAGGAGTTGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAACCGCGACTGTCAGTTCTGAAGTATTCAAAGCGGCACAGCCTGCGCTGCTGTATCTCGTACCGTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTACGACGCATGTGGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7322#0 ------------------------------------------------------------ consensus_7322#1 CCGGTCGACGCTGCTGCTGACCGGGCTGCTCATCTACGACGTGTTTTGGGTGTTCTTTTC 60 consensus_7322#0 ------------------------------------------------------------ consensus_7322#1 CTCGTACATCTTCAGCACGAACGTGATGGTGAAGGTGGCGACCCGGCCGGCCGACAATCC 120 consensus_7322#0 --------------------------------CCGCCCACGCGTCCG---CACCCAAGCT 25 consensus_7322#1 GGTCGGCATTGTGGCGCGCAAGCTGAACCTGGGCGGCATCGTGAAGGAACCGCCCAAGCT 180 ** * ** * * * ******** consensus_7322#0 GAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCT 85 consensus_7322#1 GAACCTGCCCGGCAAGCTGGTGTTTCCGAGCATCCACAACAGCGGCCACTTTTCGATGCT 240 ************************************************************ consensus_7322#0 CGGTCTGGGCGATATCGTGATGC-GGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGC 144 consensus_7322#1 CGGTCTGGGCGATATCGTGATGCCGGGGCTGCTGCTGTGCTTTGTGCTGCGCTACGACGC 300 *********************** ************************************ consensus_7322#0 TTACAAAAAGTCCCAGTCCACCCAGACGGC-GAGGCCGGCGTTCCACCACCGAAAGGAGT 203 consensus_7322#1 TTACAAAAAGTCCCAGTCCACCCAGACGGCCGAGGCCGGCGTTCCACCACCGAAAGGAGT 360 ****************************** ***************************** consensus_7322#0 TGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAAC 263 consensus_7322#1 TGGCTCGAAGCTTACTTATTTTCATTGTTCCTTATTAGGTTACTTCCTTGGATTGTTAAC 420 ************************************************************ consensus_7322#0 CGCGACTGTCAGTTCTGAAGTATTCAAAGCGG-ACAGC-TGCGCTGCTGTATCTCGTACC 321 consensus_7322#1 CGCGACTGTCAGTTCTGAAGTATTCAAAGCGGCACAGCCTGCGCTGCTGTATCTCGTACC 480 ******************************** ***** ********************* consensus_7322#0 GTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTGCGACGCATGTG 381 consensus_7322#1 GTTTACACTGCTACCTCTGCTTACGATGGCATATCTGAAGGGTGATCTACGACGCATGTG 540 ************************************************ *********** consensus_7322#0 GAGTGAACCGTTCATCATCCAACAAGCTTCGAAGCAGCTAGAGGTATAAACCACACTGAT 441 consensus_7322#1 GGAG-------------------------------------------------------- 544 * consensus_7322#0 CACATGCTCTCCACGGAAGCGAATACAATACAGCAACACACAATCTGTACGCAAAATAGT 501 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 ATTAAGTGCAACTAACTACACAAACACACGTACACGGGGCGAACGATCGATCGTAGTAGT 561 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GTACTAGGAAAAGGATTACTACTATAACTACTACTGCAATTATATGCAACCGTACATAGC 621 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GTATCTCATGCTGGTACCGCCCAACTGACGGTACCGGGCCGAAGGGGGGAAAGTCAATAA 681 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GTGGGCAGTGTGGATATGCCGAGATTGAACAAAACTCTTGAACAAAGATCCCTTTTTCTA 741 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GTACACACCCCCCTTTCCTGGAAAGCACTCGAGACCAGCACGGGAAATACCTTCCGGGCA 801 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 CGGTAGCAGCAGTGTAGGTTTAGATTGTGGTTAGGTTTAACGTGACGGGAAGGGAGCGAA 861 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 TGCAAGCAACAGGGGTGGACGGCGATATGGCACGAATGAATCATTTAAGGTAGTTTAACA 921 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 ATATTTGAATGTGATTAGGCGTTAGGGAATTAGTAGAGCCGTTTGTGTGTTTGTATGTGT 981 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GTGTGTGTGTTTTCAGAACCGTGTGCCGGTGGCAGAAAACGCAAAACGTTCGCTAATCAA 1041 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 AACGAGCAGAGACGACAGAGTGTCGTCGGTACAGGTGTACGCTCGGGCGCGCGGACGTAC 1101 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GAGTTAGGTTATTATAGGATTACATCTCATTTTGCATCGTCTCTGTACACAACCCACTTT 1161 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 CCTATGCATATTACACCAACGAACGATTCATACACGCCTGGTGAGTCACGTTGCAGCGCG 1221 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 CAGTGCACGCTTCCGTTGACTTGCCTGCCGCCTACTACCTGCTATACCGGATAAAGGTGT 1281 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GTTCTTTTGTTTTTGCGCGCGACAGACATTTGTGTTTTTTTTTCTAATCGCGCAGCTTTT 1341 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GTCTCTCGCTATCTCTCGCTATCTCTCTATCACTCTTTCCGTCTCTCTTTTCTCTTCCCG 1401 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 GAGGAACATGATATGGCCGTGGATGTTTTAAATTTAAAGCAGAACGCATTTTTCTTCGTA 1461 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 CCTTAGCATTGTTAGCGAATCGGATGGATAACTTTATTGACCGTTACAGCGCAGTACTGT 1521 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 TTGGCGTAATGCAACTACAATATTAATTATGTTTAAACTTTTTTCTCATCTCCGAATTTT 1581 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 TGAGTAGGTGCGAATTGGTATAGATGTATCACATTATACCCGGGTTAGCAAAGGATATAC 1641 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 AATTTGCTCTCATACAAAAAAACAAATGTTAAAACTATCATGTAAAAACTGAACGTACCT 1701 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 ATGCGACGCACCACACCAGCACTGCTTGCATCTGCATATGCTGGTTCATCTTTGGCCTGT 1761 consensus_7322#1 ------------------------------------------------------------ consensus_7322#0 AAGACAAAATTGGATACTAAAACGAAAAAC 1791 consensus_7322#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||