These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1148 fasta sequence [CCATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGTTGAGAATAAACAACCACAGCAAACGGTAGTTCTGTGTTTTCTCATCTTGTGAATAGAAAAGTGTTGTGCTTTATCAAATCTTTGGATGAATCTCGTGGGATCAGGAAAAGAAGATTTATGAATCCCCAGAGGTGCATCAATATCTAAAGAGTTAACATTTGCACTCTCCTTGTTACGGGTAGCTATGAACTTCGAATGAGACGGACCCTCGCATATGACAAGCACTGGTCAGCTATGACGAGATGCGTAAAAGCGTATGCGAATTTATATTTAATACACACTCTTACAATGAAACAAGCCATCAATCATAGTGCCAACAGACAATTGTTCGGCGTGAAGTGCAATGAAGAGGCAATTTATTCATAAGTCTTTAGATATTCGTGGTTTTTAAGAGATTCGAATGTCTTTGCCGTAGGTTTATAAAACTTTTAATGCTCATGAATCTCTGTATGAAAGTCTTTAAATACATTCCCTTCAAAGATTGACTGATTTAAAGACTTTAAAGATGAATTCNCATCATAGCTACCAACTAAGGNGC] [+] EMBL BX609823 [CCATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGTACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGTTGAGAATAAACA ] [+] EMBL BX621959 [ CATAGCTTCGTACTTTGTTTGCTTTATTGCATCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACNGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGGTGAGAATAAACAAC ] [+] EMBL BX625727 [ GCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGTTGAGAATAAACAACCACA ] [+] EMBL BX627836 [ CCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGTTGAGAATAAACAACCACAGCAAACGGTAGTTCTGTGTTTTCTCATCTTGTGAATAGAAAAGTGTTGTGCTTTATCAAATCTTTGGATGAATCTCGTGGGATCAGGAAAAGAAGATTTATGAATCCCCAGAGGTGCATCAATATCTAAAGAGTTAACATTTGCACTCTCCTTGTTACGGGTAGCTATGAACTTCGAATGAGACGGACCCTCGCATATGACAAGCACTGGTCAGCTATGACGAGATGCGTAAAAGCGTATGCGAATTTATATTTAATACACACTCTTACAATGAAACAAGCCATCAATCATAGTGCCAACAGACAATTGTTCGGCGTGAAGTGCAATGAAGAGGCAATTTATTCATAAGTCTTTAGATATTCGTGGTTTTTAAGAGATTCGAATGTCTTTGCCGTAGGTTTATAAAACTTTTAATGCTCATGAATCTCTGTATGAAAGTCTTTAAATACATTCCCTTCAAAGATTGACTGATTTAAAGACTTTAAAGATGAATTCNCATCATAGCTACCAACTAAGGNGC] consensusID : consensus_7327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence [CAGAATCNGCNCACGAGGGCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGGTTTGGTTGTGTGCGTTATTTATTACCGTTTTTTGTTTCGTTTANTGAGATTGTTGAGAATAAACAACCACAGCAAACGGTAAAAAAAAAAAAATANCAAAAAAGNNGCAGCATGTG] [+] EMBL BX467627 [CAGAATCNGCNCACGAGGGCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGGTTTGGTTGTGTGCGTTATTTATTACCGTTTTTTGTTTCGTTTANTGAGATTGTTGAGAATAAACAACCAC ] [-] EMBL BX466901 [ gtgcgatcGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCT TACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAA GTTTGGTTGTGTGCGTTATTTATTACC TTTTTTGTTTCGTTT TTTTTTTGTTGAGAATAAACAACCACAGCAAACGGTAAAAAAAAAAAAATANCAAAAAAGNNGCAGCATGTG] consensusID : consensus_7327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CAGAATNCCCGAGGTTATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACTGGGCTGTCGTACTGTTGCTGGCCTGCTCCGGCACCTGTACTGTGAAGTACTGCCTGCGCCTGGCCGTATCTGGTCGTCCATGCCGCACCGGCCCCCGGTGCTGAAGTATGCCTGTGGCTGCCGGCCCGATCGTGAACGTGCGGTTGCACCGGTCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGCTAGTGCATGCGGACACCGGTGGTTAAGTACGCCGACACCGGNCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGATCGTCGCTCATGACGCCCGCCTCCGCTGCTCACAGCTACGCGCCCGACCTACCACGGCATGGTAAGCAAGCACCAAAGCAAGACCGTCCACCCTATNNGGCTGGCCANACGGCANACGTTCGCCCGATCATACTCTACGCCATCTGTACTCCANAGCCCAGCT] [+] EMBL AL930973 [CAGAATNCCCGAGGTTATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACTGGGCTGTCGTACTGTTGCTGGCCTGCTCCGGCACCTGTACTGTGAAGTACTGCCTGCGCCTGGCCGTATCTGGTCGTCCATGCCGCACCGGCCCCCGGTGCTGAAGTATGCCTGTGGCTGCCGGCCCGATCGTGAACGTGCGGTTGCACCGGTCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGCTAGTGCATGCGGACACCGGTGGTTAAGTACGCCGACACCGGNCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGATCGTCGCTCATGACGCCCGCCTCCGCTGCTCACAGCTACGCGCCCGACCTACCACGGCATGGTAAGCAAGCACCAAAGCAAGACCGTCCACCCTATNNGGCTGGCCANACGGCANACGTTCGCCCGATCATACTCTACGCCATCTGTACTCCANAGCCCAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7327#0 --------------CCATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAA 46 consensus_7327#1 -----CAGAATCNGCNCACGAGGGCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAA 55 consensus_7327#2 CAGAATNCCCGAGGTTATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAA 60 * ************************************ consensus_7327#0 TTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGC 106 consensus_7327#1 TTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGC 115 consensus_7327#2 TTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGC 120 ************************************************************ consensus_7327#0 TCCGGGCTACTACGGCGATCAC-GGGCTGTCGTAC-GTTGCGG--CCGCTCCGGCACC-G 161 consensus_7327#1 TCCGGGCTACTACGGCGATCAC-GGGCTGTCGTAC-GTTGCGG--CCGCTCCGGCACC-G 170 consensus_7327#2 TCCGGGCTACTACGGCGATCACTGGGCTGTCGTACTGTTGCTGGCCTGCTCCGGCACCTG 180 ********************** ************ ***** * * *********** * consensus_7327#0 TAC-GTGAAGTACG--CCGCGCC-GGCCGTATC-GGTCGTCCATGCCGCACCGGCCCCCG 216 consensus_7327#1 TAC-GTGAAGTACG--CCGCGCC-GGCCGTATC-GGTCGTCCATGCCGCACCGGCCCCCG 225 consensus_7327#2 TACTGTGAAGTACTGCCTGCGCCTGGCCGTATCTGGTCGTCCATGCCGCACCGGCCCCCG 240 *** ********* * ***** ********* ************************** consensus_7327#0 -TGCTGAAGTATGCC-GTGGCGCCGGCCCCGATCGTGAAGG--CGGTTGCACCGG-CGGC 271 consensus_7327#1 -TGCTGAAGTATGCC-GTGGCGCCGGCCCCGATCGTGAAGG--CGGTTGCACCGG-CGGC 280 consensus_7327#2 GTGCTGAAGTATGCCTGTGGCTGCCGGCCCGATCGTGAACGTGCGGTTGCACCGGTCGGC 300 ************** ***** * * ************ * ************ **** consensus_7327#0 CACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGG-TAGTGCATGCGG-CACCGGTG 329 consensus_7327#1 CACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGG-TAGTGCATGCGG-CACCGGTG 338 consensus_7327#2 CACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGCTAGTGCATGCGGACACCGGTG 360 ************************************** ************ ******** consensus_7327#0 GTTAAGTACGCCG-CACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGG-TCG 387 consensus_7327#1 GTTAAGTACGCCG-CACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGG-TCG 396 consensus_7327#2 GTTAAGTACGCCGACACCGGNCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGATCG 420 ************* ****** *********************************** *** consensus_7327#0 TCGCTCATG-CGCCCGC-TCCGCTGCTCAAG--TACGCGCCCG-CCTACCACGG-ATGGT 441 consensus_7327#1 TCGCTCATG-CGCCCGC-TCCGCTGCTCAAG--TACGCGCCCG-CCTACCACGG-ATGGT 450 consensus_7327#2 TCGCTCATGACGCCCGCCTCCGCTGCTCACAGCTACGCGCCCGACCTACCACGGCATGGT 480 ********* ******* *********** ********** ********** ***** consensus_7327#0 AAGCAAGCACCAAAG-AAGACCGTCCACCCTTTGG---TGGCAAGG-----AACGTTCGC 492 consensus_7327#1 AAGCAAGCACCAAAG-AAGACCGTCCACCCTTTGG---TGGCAAGG-----AACGTTCGC 501 consensus_7327#2 AAGCAAGCACCAAAGCAAGACCGTCCACCCTATNNGGCTGGCCANACGGCANACGTTCGC 540 *************** *************** * **** * ******** consensus_7327#0 CCGATCAT-CTCTACGCCATCTGT--TTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAG 549 consensus_7327#1 CCGATCAT-CTCTACGCCATCTGT--TTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAG 558 consensus_7327#2 CCGATCATACTCTACGCCATCTGTACTCCANAGCCCAGCT-------------------- 580 ******** *************** * * ********* consensus_7327#0 CCATAGTGAAG-TTTGGTTGTGTGCGTTATTTATTACC-TTTTTTGTTTCGTTTTTTTT- 606 consensus_7327#1 CCATAGTGAAGGTTTGGTTGTGTGCGTTATTTATTACCGTTTTTTGTTTCGTTTANTGAG 618 consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 -TTGTTGAGAATAAACAACCACAGCAAACGGTAGTTCTGTGTTTTCTCATCTTGTGAATA 665 consensus_7327#1 ATTGTTGAGAATAAACAACCACAGCAAACGGTAAAAAAAAA-------AAAATANCAAAA 671 consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 GAAAAGTGTTGTGCTTTATCAAATCTTTGGATGAATCTCGTGGGATCAGGAAAAGAAGAT 725 consensus_7327#1 AAGNNGCAGCATGTG--------------------------------------------- 686 consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 TTATGAATCCCCAGAGGTGCATCAATATCTAAAGAGTTAACATTTGCACTCTCCTTGTTA 785 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 CGGGTAGCTATGAACTTCGAATGAGACGGACCCTCGCATATGACAAGCACTGGTCAGCTA 845 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 TGACGAGATGCGTAAAAGCGTATGCGAATTTATATTTAATACACACTCTTACAATGAAAC 905 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 AAGCCATCAATCATAGTGCCAACAGACAATTGTTCGGCGTGAAGTGCAATGAAGAGGCAA 965 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 TTTATTCATAAGTCTTTAGATATTCGTGGTTTTTAAGAGATTCGAATGTCTTTGCCGTAG 1025 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 GTTTATAAAACTTTTAATGCTCATGAATCTCTGTATGAAAGTCTTTAAATACATTCCCTT 1085 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 CAAAGATTGACTGATTTAAAGACTTTAAAGATGAATTCNCATCATAGCTACCAACTAAGG 1145 consensus_7327#1 ------------------------------------------------------------ consensus_7327#2 ------------------------------------------------------------ consensus_7327#0 NGC 1148 consensus_7327#1 --- consensus_7327#2 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||