These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1039 fasta sequence [CTGGAAAAACGTAAACAAACGTGCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTACCTGTTCGACAAGGAAGCGATCCTGACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGA-CTCCAG-AAGAAGCTGGATAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTCACACTGAATGAACAGCCCAGCACGAGCGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAG--G-CCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGC-TGGTGAAGGATCCGGCCGACAAG-AAGTCACTGATTGCGAAGGAAAACCGGTACATGTGTGCGGTGACGCATGGATATCCTGAGCAATTCCGTACCGTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTATTGAAAAAATCATCAAAAAGGACATGATCCACCCGCTGACGAATGAAAAGCTCTCGGAGTCGGATATTATACCACTACAGCGGGGCGGTACCGGTTTTGCAACGACGAATGAAAAACTGGAAGCCAAAGAGCAAAAGCCATTTCTGCAGGTTTAAGTGTGTGATTAAGTAACTTCAAGATTCAAAACTCAATAAAAATGACCTAGATGCTAAGGGGGAACCTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CNS08S6Q [CTGGAAAAACGTAAACAAACGTGCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGCACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTACCTGTTCGACAAGGAAGCGATCCTGACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGA CTCCAGAAAGAAGCTGGATAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTCACACTGAATGAACAGCCCAGCACGAGCGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAG G CCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGC TGGTGAAGGATCCGGCCGACAAG AAGTCACTGATTGCGAAGGAAAACCGGTACATGTGTGCGGTGACGCATGTATATCCTGAGCAATTCCGTACCGTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTATTGAAAAAATCATCAAAAAGGACATGATCCACCCGCTGACGAATGAAAAGCTCTCGGAGTCGGATATTATACCACTACAGCGGGGCGGTACCGGTTTTGCAACGACGAATGAAAAACTGGAAGCCAAAGAGCAAAAGCC ] [+] EMBL BM625046 [ ccgCGTAAACAAACGGGCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTATCTGTTCGACAAGGAAGCGATCCTAACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGAGCTCCAG AAGAAGCTGGACAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTCACACTGAATGAACAGCCCAGCACGAGTGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAGACG CCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGC TGGTGAAGGATCCGG ] [+] EMBL CNS08M9F [ CAAACGTGCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTACCTGTTCGACAAGGAAGCGATCCTGACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGA GTCCAG AAGAAGCTGGATAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTTACACTGAATGAACAGCCCAGCACGAGCGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAG GCCCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGC TGGTGAAGGATCCGGCCGACAAG AAGTCACTGATTGCGAAGGAAAACCGGTACATGTGTGCGGTGACGCATGGATATCCTGAGCAATTCCGTACCGTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTAT ] [+] EMBL BM588242 [ cCGCACTCATTACTGTTTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCGTCGCATCGGGAAAGATTCGGTCAAGAGCTTCGACTGCTGTTCCCTCACCTTGCAGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTATCTGTTCGACAAGGAAGCGATCCTAACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGAGTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGCGGAGCTCCAG AAGAAGCTGGACAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGTCACACTGAATGAACAGCCCAGCACGAGTGGCGCCATCTCGAACGTGTCGCTCGGCAAGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAGACG CCGGCCGCCAAGGTGTCGCGCATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAGGATCTGATCGAGGTGAAGTTTACGCTTGGTGAAGGATCCGGCCGACAAGAAAGTCACTG ] [-] EMBL CNS08S6R [ CACTGATTGCGAAGGAAAACCGGTACATGTGTGCGGTGACGCAT GATATCCTGAGCAATTCCGTCCCGTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTATTGAAAAAATCATCAAAAAGGACATGATCCACCCGCTGACGAATGAAAAGCTCTCGGAGTCGGATATTATACCACTACAGCGGGGCGGTACCGGTTTTGCAACGACGAATGAAAAACTGGAAGCCAAAGAGCAAAAGCCATTTCTGCAGGTTTAAGTGTGTGATTAAGTAACTTCAAGATTCAAAACTCAATAAAAATGACCTAGATGCTAAGGGGGAACCTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [GGCTCAGGCAAGAATTCCCCGAGGTTAANGGGNGCACTCATTACTGTCTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGGCATGCTAGCAAATTGTACTGCCGGGGCCGTTTACACTGTACCACGAGAAGAAGAAGGATGCGGCAACTACGTGGCTATCGGCACAACTGTACCCTGTACGCATCGGGAAAGATTCTGGTCAAGAGCCTTCGGACTGCTGTNNACCCTACACCTTGCCAGACGTGTCGGAATCCAGGTAACTACACCTAAACGATGGCCTATAGCTGTCCGACACAAGGCACAAGGCGGAACTCCCGTAAACCCGTTACCAAGTTCAACTCCGTTCGGTCANNACGTCACCGGCNANCCCGGCACGCTTANCCCAGGGCCCCCGGGGCACCCCGCACTTGGCACNACTGGGAGGCTTACCCGNGANTCCAACAGTCCACAGCAAATTGAAACANGCCCACNGNGNCAACCGNCAGCTGGGGCNCAGNTGCCACGGCGCAACTTGCCGCGGCCCCACANACAC] [+] EMBL AL696417 [GGCTCAGGCAAGAATTCCCCGAGGTTAANGGGNGCACTCATTACTGTCTCGTGAAATTTTATTAAGAAAAGCTAGTTAAATTATGACCCGGCATGCTAGCAAATTGTACTGCCGGGGCCGTTTACACTGTACCACGAGAAGAAGAAGGATGCGGCAACTACGTGGCTATCGGCACAACTGTACCCTGTACGCATCGGGAAAGATTCTGGTCAAGAGCCTTCGGACTGCTGTNNACCCTACACCTTGCCAGACGTGTCGGAATCCAGGTAACTACACCTAAACGATGGCCTATAGCTGTCCGACACAAGGCACAAGGCGGAACTCCCGTAAACCCGTTACCAAGTTCAACTCCGTTCGGTCANNACGTCACCGGCNANCCCGGCACGCTTANCCCAGGGCCCCCGGGGCACCCCGCACTTGGCACNACTGGGAGGCTTACCCGNGANTCCAACAGTCCACAGCAAATTGAAACANGCCCACNGNGNCAACCGNCAGCTGGGGCNCAGNTGCCACGGCGCAACTTGCCGCGGCCCCACANACAC] consensusID : consensus_7332#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [CGCCGAGTTATTAAGAAAAGCTAGTTAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCCTGGGGGTGTTTCCCGGACGAATTCCCGTAGGAGCAGTACAAACAACAACGACGGCATTATCCCGCNGGTCGCGTTACCAAGAANGAGGGGGCAAAAATACGGGCCCCCCNTTTTANTTTCCCCCACGCGGAAAAACCCCCCTTTNTGGGGGCCTTTATGGGGTTATATTCCACCCATGTTACATCCCTTTAGGGCCAAAAGGA] [+] EMBL AL934910 [CGCCGAGTTATTAAGAAAAGCTAGTTAATTATGACCCGCCACGCTAGAAATTGTACTGCCGGGGCCGTTTACACGTACCACGAGAAGAAGAAGGATGCGGCCAACTCGGGCTTCGGCACAACGTCCCCTGGGGGTGTTTCCCGGACGAATTCCCGTAGGAGCAGTACAAACAACAACGACGGCATTATCCCGCNGGTCGCGTTACCAAGAANGAGGGGGCAAAAATACGGGCCCCCCNTTTTANTTTCCCCCACGCGGAAAAACCCCCCTTTNTGGGGGCCTTTATGGGGTTATATTCCACCCATGTTACATCCCTTTAGGGCCAAAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7332#0 ----CTGGAAAAACGT-----AAACAAACGTGCGCACTCATTACTGTTTCGTGAAATTTT 51 consensus_7332#1 GGCTCAGGCAAGAATTCCCCGAGGTTAANGGGNGCACTCATTACTGTCTCGTGAAATTTT 60 consensus_7332#2 -------------------------------------------------CGCCGAGT--T 9 ** * * * consensus_7332#0 ATTAAGAAAAGCTAGTTAAATTATGACCCGCCACGCTAG-AAATTGTACTGCCGGGGCCG 110 consensus_7332#1 ATTAAGAAAAGCTAGTTAAATTATGACCCGGCATGCTAGCAAATTGTACTGCCGGGGCCG 120 consensus_7332#2 ATTAAGAAAAGCTAGTTAA-TTATGACCCGCCACGCTAG-AAATTGTACTGCCGGGGCCG 67 ******************* ********** ** ***** ******************** consensus_7332#0 TTTACAC-GTACCACGAGAAGAAGAAGGATGCGGCCA--ACTCGGGCTTCGGCACAAC-- 165 consensus_7332#1 TTTACACTGTACCACGAGAAGAAGAAGGATGCGGCAACTACGTGGCTATCGGCACAACTG 180 consensus_7332#2 TTTACAC-GTACCACGAGAAGAAGAAGGATGCGGCCA--ACTCGGGCTTCGGCACAAC-G 123 ******* *************************** * ** ** ********** consensus_7332#0 -GTCCCGT-CGCAT---CGGGAAAGATTC-GGTCAAGAGCTTC--GACTGCTGTTCCCTC 217 consensus_7332#1 TACCCTGTACGCAT---CGGGAAAGATTCTGGTCAAGAGCCTTCGGACTGCTGTNNACCC 237 consensus_7332#2 TCCCCTGGGGGTGTTTCCCGGACGAATTCCCGTAGGAGCAGTACAAACAACAACGACGGC 183 ** * * * * *** **** ** * ** * * consensus_7332#0 ---ACCTTGC-AGCCGTGTCGGAATCCAGTAATAACTAAAGATGGCTACCTGTTCGACAA 273 consensus_7332#1 TACACCTTGCCAGACGTGTCGGAATCCAG--GTAACTACAC----CTAAACGATGGCCTA 291 consensus_7332#2 ATTATCCCGCNGGTCGCGTTACCAAGAANGAGGGGGCAAAAA----TACGGGCCCCCCNT 239 * * ** * ** ** * * * * ** * * consensus_7332#0 GGAAGCGATCCTGACGTACATCATCTCGAAGAAGAACGAGTACAGCCGGAAGATGAAGGA 333 consensus_7332#1 --TAGCTGTCC-GACACAAGGCA---CAAGGCGGAAC---TCCCGTAAACCCGTTACCAA 342 consensus_7332#2 TTTANTTTCCCCCACGCG---------GAAAAACCCCCCTTTNTGGGGGCCTTTATGGGG 290 * ** ** * * * * * consensus_7332#0 GTACGAGAAGCAGATGAAGCAGGACGAGGAGGAGGATGCGGCCAAAGCGAACGC-GGACT 392 consensus_7332#1 GTTCAAC--TCCGTTCGGTCANNACGTCACCGGCNANCCCGGCACGCTTANCCCAGGGCC 400 consensus_7332#2 TTATATTCCACCCATGTTACATCCCTTTAGGGCCAAAAGGA------------------- 331 * * * ** * * * consensus_7332#0 CCAGAAGAAGCTGGATAAATTCATTTCCACCGAGAAGAACATCGTCAGCAACAAAGCAGT 452 consensus_7332#1 CCCGGGGCACCCCG---CACTTGGCACNACTGGGAGGCTTACC--CGNGANTCCAACAGT 455 consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 C-ACACTGAAT--GAACAGCCCAGCACGAGCGGC-GCCATCTCGAACGTGTCGCTCGGCA 508 consensus_7332#1 CCACAGCAAATTGAAACANGCCCACNGNGNCAACCGNCAGCTGGGGCNCA--GNTGCCAC 513 consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 AGCGTAAGGAGCTGCCCAGCTTCTGGGTACCGTCGCAGGCCGGCCGCCAAGGTGTCGCGC 568 consensus_7332#1 GGCGCAACTTGCCGCG-GCCCCACANACAC------------------------------ 542 consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 ATCGAAAAGCCGGACAGCAAGATCTACTGTCCCGTGTCGAACAAACCGCTCAAGGCGAAG 628 consensus_7332#1 ------------------------------------------------------------ consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 GATCTGATCGAGGTGAAGTTTACGCTGGTGAAGGATCCGGCCGACAAGAAGTCACTGATT 688 consensus_7332#1 ------------------------------------------------------------ consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 GCGAAGGAAAACCGGTACATGTGTGCGGTGACGCATGGATATCCTGAGCAATTCCGTACC 748 consensus_7332#1 ------------------------------------------------------------ consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 GTGCGCAGTGCTGAAACCGACCGGAGACGTCGTTACGATGGAGTGTATTGAAAAAATCAT 808 consensus_7332#1 ------------------------------------------------------------ consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 CAAAAAGGACATGATCCACCCGCTGACGAATGAAAAGCTCTCGGAGTCGGATATTATACC 868 consensus_7332#1 ------------------------------------------------------------ consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 ACTACAGCGGGGCGGTACCGGTTTTGCAACGACGAATGAAAAACTGGAAGCCAAAGAGCA 928 consensus_7332#1 ------------------------------------------------------------ consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 AAAGCCATTTCTGCAGGTTTAAGTGTGTGATTAAGTAACTTCAAGATTCAAAACTCAATA 988 consensus_7332#1 ------------------------------------------------------------ consensus_7332#2 ------------------------------------------------------------ consensus_7332#0 AAAATGACCTAGATGCTAAGGGGGAACCTAAAAAAAAAAAAAAAAAAAAAA 1039 consensus_7332#1 --------------------------------------------------- consensus_7332#2 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||