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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1478 fasta sequence
[CCGGTTGGTGTTTCATCAGAAGAAACCGCTCGGGCCGGATGGTTTCCGATGGCTGAAGCTTCACTGCATTAATCTGACGGGGCTGAAAAAGCGTGACTCGGTGGAGGAGAGGCTACGGTACGCGGATGAGATAATGGACGACATACTGGACTCGGCCGATCGACCGCTGACGGGGCGAATGTGGTGGAGCAACTCGGACGAACCGTGGCAAACGCTCTCCTGCTGCATGGAAATAGCGAAGGTTCATCGATGTGCCGATCCGGAAAAGTTTGAAAGTGGCTTCCCGATCCATCAGGATGGTTCCTGCAACGGATTGCAGCATTATGCCGCGCTGGGTCGCGACACGCCCGGTGCGATCAGTGTCAACCTGGCGCCGGCCGAGGTGCCCCAGGATGTGTACAGCGCAGTGGCGGCACTGGTGGAGGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAG-TTTTTGGTACAGAAGTACAGCTACGATGAGAATGAAATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGCTAGAAAGCAATCACACGCGCCAAACTTAAAGGATTGGTCTAGTCAAGCCGGATCCCAAAAAGAATCCCAGCTCTCGTGCGGATGCGCGGTTCCGATACTGCGTGGTTCCCAGGATGCCCAGTATTCCTATGCCTAATGTCCGTTCGCTTCCCGCGCATACTTATACTAGCCATTGATGGACCGGAAAGGTACACATACGCACGGCCTCCTCTCCTGCCCCAGTGAGTTTGCC]
[+] EMBL BM602144 [CCGGTTGGTGTTTCATCAGAAGAAACCGCTCGGGCCGGATGGTTTCCGATGGCTGAAGCTTCACTGCATTAATCTGACGGGGCTGAAAAAGCGTGACTCGGTGGAGGAGAGGCTACGGTACGCGGATGAGATAATGGACGACATACTGGACTCGGCCGATCGACCGCTGACGGGGCGAATGTGGTGGAGCAACTCGGACGAACCGTGGCAAACGCTCTCCTGCTGCATGGAAATAGCGAAGGTTCATCGATGTGCCGATCCGGAAAAGTTTGAAAGTGGCTTCCCGATCCATCAGGATGGTTCCTGCAACGGATTGCAGCATTATGCCGCGCTGGGTCGCGACACGCCCGGTGCGATCAGTGTCAACCTGGCGCCGGCCGAGGTGCCCCAGGATGTGTACAGCGCAGTGGCGGCACTGGTGGAGGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGT ]
[+] EMBL BM618398 [ ccgGGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACT TGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAGTTTTTTGGTACA ]
[+] EMBL BM629226 [ ccGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTTCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGAC ]
[+] EMBL BX618189 [ TGAAGGTGGCGGCCGTGCTGGACGGTTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACGGTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGAGTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACTCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAG TTTTTGGTACAGAAGTACAGCTACGATGAGAATGAAATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATT ]
[+] EMBL BM596213 [ ccgAAACGTTCGATGCGCTGAGCGAGATGTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACAC ]
[+] EMBL BX612937 [ ACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAG TTTTTGGTACAGAAGTACAGCTACGATGAGAATGAAATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGCTAGAAAGCAATCACACGCGCCAAACTTAAAGGATTGGTCTAGTCAAGCCGGATCCCAAAAAGAATCCCAGCTCTCGTGCGGATGCGCGGTTCCGATACTGCGTGGTTCCCAGGATGCCCAGTATTCCTATGCCTAATGTCCGTTCGCTTCCCGCGCATACTTATACTAGCCATTGATGGACCGGAAAGGTACACATACGCACGGCCTCCTCTCCTGCCCCAGTGAGTTTGCC]
consensusID : consensus_7333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence
[CAGAATCGGCACGTAGGAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAGTTTTATGGTACAGAAGTACAGCTACGATGAGAATGAACATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGGCTAGAAAGCAATCACAGCGGCGCCAAACTTAAAGGATTGGTCTAGGTCAAGCCGGATCCGAGNAAGAATCCCAAGGTACTACGGTGGCGGGAATTGCTCGCAGGGATTTCCCGAATTACGTGGAGCGATTGGGTTTCCCCCAAGGGAATTGNCCCGAAGGTAATTTCCCTAATTGGGCGCCTTAAAATNGGTCCACGAGGTACAGGGGTTTTCCCCGGGAGGCATTNNGC]
[+] EMBL BX468315 [CAGAATCGGCACGTAGGAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGCCGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTACAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGCGATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTTTGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGGGCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGATGAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTTGTCCAAGTTTTATGGTACAGAAGTACAGCTACGATGAGAATGAACATCAGCAACGATGGTTCGGTAATTGATCTCACCAAACGCAAGCTGAACCGGCATCCTGCAGCAGTGTCCCGATAAGGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGGCTAGAAAGCAATCACAGCGGCGCCAAACTTAAAGGATTGGTCTAGGTCAAGCCGGATCCGAGNAAGAATCCCAAGGTACTACGGTGGCGGGAATTGCTCGCAGGGATTTCCCGAATTACGTGGAGCGATTGGGTTTCCCCCAAGGGAATTGNCCCGAAGGTAATTTCCCTAATTGGGCGCCTTAAAATNGGTCCACGAGGTACAGGGGTTTTCCCCGGGAGGCATTNNGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7333#0 CCGGTTGGTGTTTCATCAGAAGAAACCGCTCGGGCCGGATGGTTTCCGATGGCTGAAGCT 60
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 TCACTGCATTAATCTGACGGGGCTGAAAAAGCGTGACTCGGTGGAGGAGAGGCTACGGTA 120
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 CGCGGATGAGATAATGGACGACATACTGGACTCGGCCGATCGACCGCTGACGGGGCGAAT 180
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 GTGGTGGAGCAACTCGGACGAACCGTGGCAAACGCTCTCCTGCTGCATGGAAATAGCGAA 240
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 GGTTCATCGATGTGCCGATCCGGAAAAGTTTGAAAGTGGCTTCCCGATCCATCAGGATGG 300
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 TTCCTGCAACGGATTGCAGCATTATGCCGCGCTGGGTCGCGACACGCCCGGTGCGATCAG 360
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 TGTCAACCTGGCGCCGGCCGAGGTGCCCCAGGATGTGTACAGCGCAGTGGCGGCACTGGT 420
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 GGAGGAAAACCGTGCCCGCGATGCGCAGAACAACGTGAAGGTGGCGGCCGTGCTGGACGG 480
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 TTTCATCCGGCGCAAGGTGATCAAACAAACTGTGATGACGACGGTGTACGGCGTGACACG 540
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 GTACGGCGCGCGGAAGCAGATCGCCCGCCAGCTCGAGTACATCGACGAGTTCCCGAAGGA 600
consensus_7333#1 ------------------------------------------------------------
consensus_7333#0 GTGGATCTGGCCCGCCTCGAGCTACCTGACGGTGAAAACGTTCGATGCGCTGAGCGAGAT 660
consensus_7333#1 ------------------------------------------------------CAGAAT 6
* **
consensus_7333#0 GTTCACCTCGGCCAAGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGC 720
consensus_7333#1 CGGCACGTAGG---AGGAAATACAGGACTGGTTCACCGACTGTGCCCGGTTGATATCGGC 63
*** * ** **********************************************
consensus_7333#0 CGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTA 780
consensus_7333#1 CGTCTGTGCGCAGAACGTGGAGTGGGTGACGCCGCTCGGGCTGCCCGTCGTGCAGCCGTA 123
************************************************************
consensus_7333#0 CAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGC 840
consensus_7333#1 CAATCGGGCGGATCGACCGGTGGCCTCCAGCAAGTCCGCCCAGCTGCCGGAACACTTTGC 183
************************************************************
consensus_7333#0 GATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTT 900
consensus_7333#1 GATGGATTCGTACGAGAAGCCCAACATCATGAAGCAGAAGAACGCGTTCCCGCCCAACTT 243
************************************************************
consensus_7333#0 TGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGG 960
consensus_7333#1 TGTGCATTCGCTCGATTCGAGCCACATGATGCTGACGTCGCTGTACTGCGAGCGGGCCGG 303
************************************************************
consensus_7333#0 GCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGAT 1020
consensus_7333#1 GCTGACGTTCATCTCCGTTCACGATTGCTACTGGACGCATGCCTGCACTGTTCCCACGAT 363
************************************************************
consensus_7333#0 GAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTT 1080
consensus_7333#1 GAACCGGATTTGTCGCGAGCAGTTTGTAGCGCTGCACTCCGAACCGATTCTGGAGGATTT 423
************************************************************
consensus_7333#0 GTCCAAGTTTT-TGGTACAGAAGTACAGCTACGATGAGAATGAA-ATCAGCAACGATGGT 1138
consensus_7333#1 GTCCAAGTTTTATGGTACAGAAGTACAGCTACGATGAGAATGAACATCAGCAACGATGGT 483
*********** ******************************** ***************
consensus_7333#0 TCGGTAATTGATCTCACCAAACGCAAGCTGAACCG-CATCCTGCAGCAGTGTCCCGATAA 1197
consensus_7333#1 TCGGTAATTGATCTCACCAAACGCAAGCTGAACCGGCATCCTGCAGCAGTGTCCCGATAA 543
*********************************** ************************
consensus_7333#0 GGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAG-CTAGAAAGCAA 1256
consensus_7333#1 GGGCGACTTCGACCTACGCAAAGTGCTTGATTCGGTGTACTTCTTCAGGCTAGAAAGCAA 603
************************************************ ***********
consensus_7333#0 TCACAC--GCGCCAAACTTAAAGGATTGGTCTAG-TCAAGCCGGATCCCAAAAAGAATCC 1313
consensus_7333#1 TCACAGCGGCGCCAAACTTAAAGGATTGGTCTAGGTCAAGCCGGATCCGAGNAAGAATCC 663
***** ************************** ************* * ********
consensus_7333#0 CAGCTCTCGTGCGGATGCGCGGTTCCGATACTGCGTGGTTCCCAGGATGCCCAGTATTCC 1373
consensus_7333#1 CAAGGTAC-TACGGTGGCG-GGAATTGCTCGCAGGGATTTCCCGAATTACGTGGAGCGAT 721
** * * *** *** ** * * * ***** * * *
consensus_7333#0 TATGCCTAATGTCCGTTCGCT-TCCCGCGCATACTTATACTAGCCATTGATGGACCGGAA 1432
consensus_7333#1 TGGGTTTCCCCCAAGGGAATTGNCCCGAAGGTAATTTCCCTAAT--TGGGCGCCTTAAAA 779
* * * * * **** ** ** *** * * * **
consensus_7333#0 -AGGTACAC-ATACGCACGGCCTCCTCTCCTGCCCCAGTGAGTTTGCC 1478
consensus_7333#1 TNGGTCCACGAGGTACAGGGGTTTTCCCCGGGAGGCATTNNGC----- 822
*** *** * ** ** * * * * ** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||