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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 932 fasta sequence
[CAGATCGGCACAGGATTGTAGTTGTCCCGCTCGCTTTCCCACAAAGCCTTAACTAATCCATTTCAACTTAACCCTCCATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGATAGTTGTCTTGAAGCGATGGTGATAGCTTACAGTATCAGGCAGAAATGTATTTCCTCGGACAGAAAGCTGCGGAAAATACTGCTCCGCAGTAACGCTTGCAGTGTGCCACAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTGATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGAATGAA-AAGGAGTCTAGTGGGGCGGACGAGGACTCAACATCAGAAAACGCTATCGAAATTGTGTTGAAGGAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTACACAGAGCAGCCCGAA-GATGGTGACGGTGCAGAGCAACAAATCGC-GGAA-GATGAATCGAATGATGAGAAGCTTGAATTA-GCAGATCTCGAA-CAA-TA-TCC-ACA-GCA-CGG-TGT-GGA-GA--AACT-GTTTA-CCT--GC-GAA-ATATGCG-AG-AAG-CGTTT-----CGCGACCAA-GGGCAATAT--GAAA--GCTCA-CG--CGC-TGCT-GCACAGCAACCACNAACCGTTTAGCTGTGAGCTGTGCNGGGCAACGTTTGCC-AAAAGCATAACTACAACATGCACACGATGCGTCACGCCGGCAATCGAACCCACCCGTGTCCGGNGTGTGAAAAGTCGTTCGTGTGTGCGGNGAATTTGAAGAACATATGCGCATCAC]
[+] EMBL BX466380 [CAGATCGGCACAGGATTGTAGTTGTCCCGCTCGCTTTCCCACAAAGCCTTAACTAATCCATTTCAACTTAAACCTCAATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGATAGTTGTCTTGAAGCGATGGTGATAGCTTACAGTATCAGGCAGAAATGTATTTCCTCGGACAGAAAGCTGCGGAAAATACTGCTCCGCAGTAACGCTTGCAGTGTGGCACAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTGATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGCATGAANAAGGAGTCTAGTGGGGCGGACGAGGACTCAACATCAGAAAACGCTATCGAAATTGTGTTAAAGGAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTACACAGAGCAGCCCGAANGATGGTGACGGTGCAGAGCAACAAATCGCGGGAAGGATGAATCGAATGNTGAGAAGCTTGAATTAGGCNGATCTCGAACCAATTATTCCAACAGGCACCGGTTGTGGGANGAACAACTNGTTTANCCTTGGCGGAACATATGCGAAGAAAGCCGTTTTCANACGGAACCAANGGGCAATATTGGAAAAGGCTCACCGACCGCTTGATGGCACA ]
[+] EMBL BX628682 [ ACTAATTCATTTCAATATAACCCTCCATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGTGCCAAGATTCCACTGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGATAGTTGTCTTGAAGCGATGGTGATAGCTTACAGTATCAGGCAGAAATGTATTTCCTCTGACAGAAAGCTGCGGAAAATACTGCTGCGCAGTAACGCTTGCAGTGTGCCACAAGAGGTGAAACAGCAGGAACATTTGACAGACGAAACCGTGGAAAGTGATCGAGAGACCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGAATGAA AAGGAGTCTAGTGGGGCGGACGAGGACTCAACATCAGAAAACGCTATCGAAATTGTGTTGAAGGAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTACACAGAGCAGCCCGAA GATGGTGACGGTGCAGAGCAACAAATCGC GGAA GATGAATCGAATGATGAGAAGCTTGAATTA GCAGATCTCGAA CAA TA TCC ACA GCA CGG TGT GGA GA AACT GTTTA CCT GC GAA ATATGCG AG AAG CGTTT CGCGACCAA GGGCAATAT GAAA GCTCA CG CGC TGCT GCACAGCAACCACNAACCGTTTAGCTGTGAGCTGTGCNGGGCAACGTTTGCC AAAAGCATAACTACAACATGCACACGATGC ]
[+] EMBL BX625078 [ CCCTCCATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGATAGTTGTCTTGAAGCGATGGCGATAGCTTACACTATTAGGCAGAAATGCATTTCCTCGGACAGAAAGCTGCGGAAAATACTGCTCCGCAGTAACGCTTGCAGTGTGCCACTAGAGGTGAAACAGCAGGAACATTCTACAGACGAAACCGTGGAAAGTGATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGAATGAA AAGGAGTCTAGTGGGGCGGACGAGGACTCAACATCAGAAAACGCTATCGAAATTGTGTTGAAGGAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTACACAGAGCAGCCCGAA GATGGTGACGGTGCAGAGCAACAAATCGC GGAA GATCAATCTAATGATGAGAGGCTTGAATTA GCAGATCTTGAA CNA TA TCC ACA GCA CGG TGT GGA GA AACT GNTTA CC ]
[+] EMBL BX625074 [ CCTCCATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGATAGTTGTCTTGAAGCGATGGCGATAGCTTACACTATTAGGCAGAAATGCATTTCCTCGGACAGAAAGCTGCGGAAAATACTGCTCCGCAGTAACGCTTGCAGTGTGCCACTAGAGGTGAAACAGCAGGAACATTCTACAGACGAAACCGTGGAAAGTGATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGAATGAA AAGGAGTCTAGTGGGGCGGACGAGGACTCAACATCAGAAAACGCTATCGAAATTGTGTTGAAGGAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTACACAGAGCAGCCCGAA GATGGTGACGGTGCAGAGCAACAAATCGC GGAA GATCAATCTAATGATGAGAGGCTTGAATTA GCAGATCTTGAA CAA TA TCC ACA GCA CGG TGT GGA GA AACT GTTTA C ]
[+] EMBL BX624179 [ tGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGATAGTTGTCTTGAAGCGATGGTGATAGCTTACAGTATCAGGCAGAAATGTATTTCCTCTGACAGAAAGCTGCGGAAAATACTGCTGCGCAGTAACGCTTGCAGTGTGCCACAAGAGGTGAAACAGCAGGAACATTTGACAGACGAAACCGTGGAAAGTGATCGAGAGACCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGAATGAA AAGGAGTCTAGTGGGGCGGACGAGGACTCAACATCAGAAAACGCTATCGAAATTGTGTTGAAGGAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTACACAGAGCAGCCCGAA GATGGTGACGGTGCAGAGCAACAAATCGC GGAA GATGAATCGAATGATGAGAAGCTTGAATTA GCAGATCTCGAA CAA TA TCC ACA GCA CGG TGT GGA GA AACT GTTTA CCT GC GAA ATATGCG AG AAG CGTTT CGCGACCAA GGGCAATAT GAAA GCTCA CG CGC TGCT GCACAGCAACCACAAACCGTTTAGCTGTGAGCTGTGCGGGGCAACGTTTGCCAAAAAGCATAACTACAACATGCACACGATGCGTCACGCCGGCAATCGAACCCACCCGTGTCCGGNGTGTGAAAAGTCGTTCGTGTGTGCGGNGAATTTGAAGAACATATGCGCATCAC]
consensusID : consensus_7337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CCGCGGACGCGTGGGTTTCAATTTAAACCTCAATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGACAGTTGTCTTGAAGCGATGGCGATAGCTTACACTATCAGGCAGAAATGCATTTCCTCGGACAGAAAGCTGCGGAAAATACTGCTCCGCAGTAACGCTTGCACTGTGCCCCAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTGATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGCATGAAAAGGAGTCTAGTGGGGCGGACGAGGACTCAACATCAGAAAACGCTATCGAAATTGCGTTGAAGCAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTACACAGAGCAGCCCGAAGATGGTGACGGTGCAGAGCAACAAATCGCGGAAGATGAATCTAATGATGAGAAGCTTGAATTAGCAGATCTCGAACAATATCCACAGCACGGT]
[+] EMBL BM606362 [CCGCGGACGCGTGGGTTTCAATTTAAACCTCAATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGACAGTTGTCTTGAAGCGATGGCGATAGCTTACACTATCAGGCAGAAATGCATTTCCTCGGACAGAAAGCTGCGGAAAATACTGCTCCGCAGTAACGCTTGCACTGTGCCCCAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTGATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGCATGAAAAGGAGTCTAGTGGGGCGGACGAGGACTCAACATCAGAAAACGCTATCGAAATTGCGTTGAAGCAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTACACAGAGCAGCCCGAAGATGGTGACGGTGCAGAGCAACAAATCGCGGAAGATGAATCTAATGATGAGAAGCTTGAATTAGCAGATCTCGAACAATATCCACAGCACGGT]
consensusID : consensus_7337#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[CCCCCATGCTGAGCAGAATNCCCCGAGGTTTGTTGTTGTTCCGCTCGCTTTCCCACAAGCCTTAACTAATCCATTTCAATTTAAACCTCAATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGACAGTTGTCTTGAAGCGATGGCGATAGCTTACACTATCAGGCAGAAATGCATTTCCTCGGACAGAAAGCTGCGGAANAATACTGCTCCGCAGTAACGCTTGCACTGTGCCCCAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTGATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGCATGAANNACGGAGTCTAGTGGGGCGGCACGAGGACTCAACATCAGAAAACCGCTATCGACAACTTGCGTTGAACGCAAGAATTAGCTCCTGCGTACTTTGACGAGGAA]
[+] EMBL AL696408 [CCCCCATGCTGAGCAGAATNCCCCGAGGTTTGTTGTTGTTCCGCTCGCTTTCCCACAAGCCTTAACTAATCCATTTCAATTTAAACCTCAATGGAATCGTTCGAAATTTGCCGAGTTTGCATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGAGCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGGACTGCCCGACTTGGTGTGCGACAGTTGTCTTGAAGCGATGGCGATAGCTTACACTATCAGGCAGAAATGCATTTCCTCGGACAGAAAGCTGCGGAANAATACTGCTCCGCAGTAACGCTTGCACTGTGCCCCAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTGATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGCATGAANNACGGAGTCTAGTGGGGCGGCACGAGGACTCAACATCAGAAAACCGCTATCGACAACTTGCGTTGAACGCAAGAATTAGCTCCTGCGTACTTTGACGAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7337#0 --------------CAGATCGGCACAGGATTGTAGTTGTCCCGCTCGCTTTCCCACAAAG 46
consensus_7337#1 -----------------------------------------------------------C 1
consensus_7337#2 CCCCCATGCTGAGCAGAATNCCCCGAGGTTTGTTGTTGTTCCGCTCGCTTTCCCACAAGC 60
consensus_7337#0 CCTTAACTAATCCATTTCAACTTAACCCTCCATGGAATCGTTCGAAATTTGCCGAGTTTG 106
consensus_7337#1 CGCGGACGCGTGGGTTTCAATTTAAACCTCAATGGAATCGTTCGAAATTTGCCGAGTTTG 61
consensus_7337#2 C-TTAACTAATCCATTTCAATTTAAACCTCAATGGAATCGTTCGAAATTTGCCGAGTTTG 119
* ** * ****** **** **** *****************************
consensus_7337#0 CATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGA 166
consensus_7337#1 CATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGA 121
consensus_7337#2 CATGGAAGAAGTTAAACACGTTTGGCCATTGTTTGAGCACTGCGGCAAGATCCCACCGGA 179
************************************************************
consensus_7337#0 GCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGG 226
consensus_7337#1 GCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGG 181
consensus_7337#2 GCTAACGCCAGCGACGCTAATCAGCGAATGCGCGGGTATTGCAATCGATCCAAACGATGG 239
************************************************************
consensus_7337#0 ACTGCCCGACTTGGTGTGCGATAGTTGTCTTGAAGCGATGGTGATAGCTTACAGTATCAG 286
consensus_7337#1 ACTGCCCGACTTGGTGTGCGACAGTTGTCTTGAAGCGATGGCGATAGCTTACACTATCAG 241
consensus_7337#2 ACTGCCCGACTTGGTGTGCGACAGTTGTCTTGAAGCGATGGCGATAGCTTACACTATCAG 299
********************* ******************* *********** ******
consensus_7337#0 GCAGAAATGTATTTCCTCGGACAGAAAGCTGCGGAAAA-TACTGCTCCGCAGTAACGCTT 345
consensus_7337#1 GCAGAAATGCATTTCCTCGGACAGAAAGCTGCGGAAAA-TACTGCTCCGCAGTAACGCTT 300
consensus_7337#2 GCAGAAATGCATTTCCTCGGACAGAAAGCTGCGGAANAATACTGCTCCGCAGTAACGCTT 359
********* ************************** * *********************
consensus_7337#0 GCAGTGTGCCACAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTG 405
consensus_7337#1 GCACTGTGCCCCAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTG 360
consensus_7337#2 GCACTGTGCCCCAAGAGGTGAAACAGCAGGAACATTCGACAGACGAAACCGTGGAAAGTG 419
*** ****** *************************************************
consensus_7337#0 ATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGAATGAAAA-- 463
consensus_7337#1 ATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGCATGAAAA-- 418
consensus_7337#2 ATCGAGAGTCCGAATCATGCGAGGCAAACGCAGTCAGTGAAAGTTTAGCGCATGAANNAC 479
************************************************** *****
consensus_7337#0 GGAGTCTAGTGGGGCGG-ACGAGGACTCAACATCAGAAAAC-GCTATCGAAA--TTGTGT 519
consensus_7337#1 GGAGTCTAGTGGGGCGG-ACGAGGACTCAACATCAGAAAAC-GCTATCGAAA--TTGCGT 474
consensus_7337#2 GGAGTCTAGTGGGGCGGCACGAGGACTCAACATCAGAAAACCGCTATCGACAACTTGCGT 539
***************** *********************** ******** * *** **
consensus_7337#0 TGAA-GGAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTAC 578
consensus_7337#1 TGAA-GCAAGAATTAGCTCCTGCGTACTTTGACGAGGAATACCTAATCGAAGCTACTTAC 533
consensus_7337#2 TGAACGCAAGAATTAGCTCCTGCGTACTTTGACGAGGAA--------------------- 578
**** * ********************************
consensus_7337#0 ACAGAGCAGCCCGAAGATGGTGACGGTGCAGAGCAACAAATCGCGGAAGATGAATCGAAT 638
consensus_7337#1 ACAGAGCAGCCCGAAGATGGTGACGGTGCAGAGCAACAAATCGCGGAAGATGAATCTAAT 593
consensus_7337#2 ------------------------------------------------------------
consensus_7337#0 GATGAGAAGCTTGAATTAGCAGATCTCGAACAATATCCACAGCACGGTGTGGAGAAACTG 698
consensus_7337#1 GATGAGAAGCTTGAATTAGCAGATCTCGAACAATATCCACAGCACGGT------------ 641
consensus_7337#2 ------------------------------------------------------------
consensus_7337#0 TTTACCTGCGAAATATGCGAGAAGCGTTTCGCGACCAAGGGCAATATGAAAGCTCACGCG 758
consensus_7337#1 ------------------------------------------------------------
consensus_7337#2 ------------------------------------------------------------
consensus_7337#0 CTGCTGCACAGCAACCACNAACCGTTTAGCTGTGAGCTGTGCNGGGCAACGTTTGCCAAA 818
consensus_7337#1 ------------------------------------------------------------
consensus_7337#2 ------------------------------------------------------------
consensus_7337#0 AGCATAACTACAACATGCACACGATGCGTCACGCCGGCAATCGAACCCACCCGTGTCCGG 878
consensus_7337#1 ------------------------------------------------------------
consensus_7337#2 ------------------------------------------------------------
consensus_7337#0 NGTGTGAAAAGTCGTTCGTGTGTGCGGNGAATTTGAAGAACATATGCGCATCAC 932
consensus_7337#1 ------------------------------------------------------
consensus_7337#2 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||