These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 913 fasta sequence [AATCCCCGAGGTTNCCTTTGGCAGCATACAGCAGCAGGTTTTTAGCAAAGGTCCGTATCGGATGATACTTTGGAGATGGAAATTTCCCCTCTCCACGGTGAACAGTGTCTCGACGTCGAAAATACGGATCGTTGAAAGCGGCGCCACCCAGCGGCAGCAACGACTGCACTGAACCAAGTGTCCCAAAACACCGGTCCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATCGAAATCTTACCCGTGCGGTGTTGCAATAATAAGCTCTACCGAGTCAGAATCATCTCTTACCCCGCTTTTGAGTTTGCGAATCGACCAGCGGGAGTACCAAATTTACGGAGTCGCATTTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAAGTGTGTGAATAGTGTTGTATTTTGTTCCTGCTGAGAGTGTTTTACTTTTATTTGGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAGAGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGATTCGTCAGCTATCGCACGA---AACGACCCATCGGGC-TTATCAGCGCACAGTACGACAGCTTGCTGCAGCCGCACACGATCTTCAGCGGAAGCACCGGCAGC-AGAACCTGGACACCAGCCGGCGGAGTCCGGCA-GGATGGCGGTGTGCCGCTGCTC-GATGCGCTCGGGTACAGGTGTGGAACAGTGCTACCGGGTCCGCCGAGCATCAGATGCATTTCCACCACCAGCTGGCTTGGCAGATCAACTCGTCCTCGAAGGTTGAAGTCACGGTACAAACGTTAAAAAAAGAGAAATAATANTAACCAGGCATGTGAAACCTCGGGGGCA] [+] EMBL AL695369 [AATCCCCGAGGTTNCCTTTGGCAGCATACAGCAGCAGGTTTTTAGCAAAGGTCCGTATCGGATGATACTTTGGAGATGGAAATTTCCCCTCTCCACGGTGAACAGTGTCTCGACGTCGAAAATACGGATCGTTGAAAGCGGCGCCACCCAGCGGCAGCAACGACTGCACTGAACCAAGTGTCCCAAAACACCGGTCCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATCGAAATCTTACCCGTGCGGTGTTGCAATAATAAGCTCTACCGAGTCAGAATCATCTCTTACC ] [+] EMBL BX621416 [ actcCCTTTGGCAGCATACAGCAGCAGGTTTTTAGCAAAGGTCCGTATCGGATGATACTTTGGAGATGGAAATTTCCCCTCTCCACGGTGAACAGTGTCTCGACGTCGAAAATACGGATCGTTGAAAGCGGCGCCACCCAGCGGCAGCAACGACTGCACTGAACCAAGTGTCCCAAAACACCGGTCCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATCGAAATCTTACCCGTGCGGTGTTGCAATAATAAGCTCTACCGAGTCAGAATCATCTCTTACCCCGCTTTTGANTTTGCGAATCGACCAGCGGGAGTACCAAATTTACGGAGTCGCATTTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAAGTGTGTGAATAGTGTTGTATTTTGTTCCTGCTTAGAGTGTTTTACTTTTATTTGGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAGAGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGATTCGTCAGCTATCGCACGA AACGACCCATCGGGC TTATCAGCGCACAGTACGACAGCTTGCTGCAGCCGCACACGATCTTCAGCGGAAGCACCGGCAGC AGAACCTGGACACCAGCCGGCGGAGTCCGGCA GGATGGCGGTGTGCCGCTGCTC GATGCGCTCGGGTACAGGTGTGGAACAGTGCTACCGGGTCCG ] [+] EMBL BM586004 [ ccGGCAGCATACAGCAGCAGGTTTTTAGCAAAGGTCCGTATCGGATGATACTTTGGAGATGGAAATTTCCCCTCTCCACGGTGAACAGTGTCTCGACGTCGAAAATACGGATCGTTGAAAGCGGCGCCACCCAGCGGCAGCAACGACTGCACTGAACCAAGTGTCCCAAAACACCGGTCCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATCGAAATCTTACCCGTGCGGTGTTGCAATAATAAGCTCTACCGAGTCAGAATCATCTCTTACCCCGCTTTTGAGTTTGCGAATCGACCAGCGGGAGTACCAAATTTACGGAGTCGCATTTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAAGTGTGTGAATAGTGTTGTATTTTGTTCCTGCTGAGAGTGTTTTACTTTTATTTGGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAGAGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGATTCGTCAGCTATCGCACGA AACGACCCATCGGGC TTATCAGCGCACA ] [+] EMBL BM638196 [ ccGCAAAGGTCCGTATCGGATGATACTTTGGAGATGGAAATTTCCCCTCTCCACGGTGAACAGTGTCTCGACGTCGAAAATACGGATCGTTGAAAGCGGCGCCACCCAGCGGCAGCAACGACTGCACTGAACCAAGTGTCCCAAAACACCGGTCCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATCGAAATCTTACCCGTGCGGTGTTGCAATAATAAGCTCTACCGAGTCAGAATCATCTCTTACCCCGCTTTTGAGTTTGCGAATCGACCAGCGGGAGTACCAAATTTACGGAGTCGCATTTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAAGTGTGTGAATAGTGTTGTATTTTGTTCCTGCTGAGAGTGTTTTACTTTTATTTGGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAGAGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGATTCGTCAGCTATCGCACGA AACGACCCATCGGGCTTTATCAGCGCACAGTACGACAGCTTGCTGCAGCCGCACACGATCTTCAGCGGAA ] [+] EMBL BX628495 [ CGTATCGGATGATACTTTGGAGATGGAAATTTCCCCTCTCCACGGTGAACAGTGTCTCGACGTCGAAAATACGGATCGTTGAAAGCGGCGCCACCCAGCGGCAGCAACGACTGCACTGAACCAAGTGTCCCAAAACACCGGTCCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATCGAAATCTTACCCGTGCGGTGTTGCAATAATAAGCTCTACCGAGTCAGAATCATCTCTTACCCCGCTTTTGAGTTTGCGAATCGACCAGCGGGAGTACCAAATTTACGGAGTCGCATTTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAAGTGTGTGAATAGTGTTGTATTTTGTTCCTGCTGAGAGTGTTTTACTTTTATTTGGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAGAGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGATTCGTCAGCTATCGCACGA AACGACCCATCGGGC TTATCAGCGCACAGTACGACAGCTTGCTGCAGCCGCACACGATCTTCAGCGGAAGCACCGGCAGC AGAACCTGGACACCAGCCGGCGGAGTCCGGCAGGGATGGCGGTGTGCCGCTGCTC GATGCGCTCGGGTACAGGTGTGG ] [-] EMBL AL930633 [ TGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGATTCGTCAGCTATCGCACGATATANTGACCCATCGGGC TTATCAGCGCACAGTACGACAGCTTGCTGCAGCCGCACACGATCTTCAGCGGAAGCACCGGCAGCAAGAACCTGGACACCAGCCGGCGGAGTCCGGCA GGATGCCGGTGTGCCGCTGCTCANATGCGCTCGGGTACAGGTGTGGAACAGTGCTACCGGNTCCGCCGAGCATCAGATGCATTTCCACCACCAGCTGGCTTGGCAGATCAACTCGTCCTCGAAGGTTGAAGTCACGGTACAAACGTTAAAAAAAGAGAAATAATANTAACCAGGCATGTGAAACCTCGGGGGCA] consensusID : consensus_7344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [TCGCGAGGNTATCTCGACGTCGAAAATACGGATNGTTGAAAGCGGCGCCACCCANCGGCAGCAACGACTGCACTGAACCAAGTGTCCCAAAACACCGGTCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATCGAAATCTTACCCGTGCGGTGTTGCAATAATAAGGCTCTACCGAGTCAGAATCATCTCTTACCCCGCTTTTGAGTTTGGCGAATCGAGCCAGCGGGAGTNCCAAATTTACGGAGATCGCATTTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAACGACTGTGTGAACTAGTGTGTATTCTCTGTTCCTGCTGAGAGTGTTTNACTTTTATTATAGGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAGAGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGATTCGTCAGCT] [+] EMBL AL932373 [TCGCGAGGNTATCTCGACGTCGAAAATACGGATNGTTGAAAGCGGCGCCACCCANCGGCAGCAACGACTGCACTGAACCAAGTGTCCCAAAACACCGGTCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATCGAAATCTTACCCGTGCGGTGTTGCAATAATAAGGCTCTACCGAGTCAGAATCATCTCTTACCCCGCTTTTGAGTTTGGCGAATCGAGCCAGCGGGAGTNCCAAATTTACGGAGATCGCATTTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAACGACTGTGTGAACTAGTGTGTATTCTCTGTTCCTGCTGAGAGTGTTTNACTTTTATTATAGGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAGAGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGATTCGTCAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7344#0 AATCCCCGAGGTTNCCTTTGGCAGCATACAGCAGCAGGTTTTTAGCAAAGGTCCGTATCG 60 consensus_7344#1 ------------------------------------------------------------ consensus_7344#0 GATGATACTTTGGAGATGGAAATTTCCCCTCTCCACGGTGAACAGTGTCTCGACGTCGAA 120 consensus_7344#1 -----------------------------------TCGCGAG-GNTATCTCGACGTCGAA 24 * ** * ************* consensus_7344#0 AATACGGATCGTTGAAAGCGGCGCCACCCAGCGGCAGCAACGACTGCACTGAACCAAGTG 180 consensus_7344#1 AATACGGATNGTTGAAAGCGGCGCCACCCANCGGCAGCAACGACTGCACTGAACCAAGTG 84 ********* ******************** ***************************** consensus_7344#0 TCCCAAAACACCGGTCCCAGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATC 240 consensus_7344#1 TCCCAAAACACCGGTCC-AGCGGGGCGGGTTGGTCTGCTGTGTTCCGAATTTGGGAAATC 143 ***************** ****************************************** consensus_7344#0 GAAATCTTACCCGTGCGGTGTTGCAATAATAAG-CTCTACCGAGTCAGAATCATCTCTTA 299 consensus_7344#1 GAAATCTTACCCGTGCGGTGTTGCAATAATAAGGCTCTACCGAGTCAGAATCATCTCTTA 203 ********************************* ************************** consensus_7344#0 CCCCGCTTTTGAGTTTG-CGAATCGA-CCAGCGGGAGTACCAAATTTACGGAG-TCGCAT 356 consensus_7344#1 CCCCGCTTTTGAGTTTGGCGAATCGAGCCAGCGGGAGTNCCAAATTTACGGAGATCGCAT 263 ***************** ******** *********** ************** ****** consensus_7344#0 TTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAA 416 consensus_7344#1 TTCAAGGTAGCCATCGTGCGTCGTGTTTTGTGCGTGTGTGGAACCGTGCCGAAGGGCGAA 323 ************************************************************ consensus_7344#0 G---TGTGTGAA-TAGTGT-TGTATTTTGTTCCTGCTGAGAGTGTTTTACTTTTATTT-- 469 consensus_7344#1 CGACTGTGTGAACTAGTGTGTATTCTCTGTTCCTGCTGAGAGTGTTTNACTTTTATTATA 383 ******** ****** * * * ******************** ********* consensus_7344#0 GGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAG 529 consensus_7344#1 GGAGGAAAAATTGCGCATCCTGCGTAGAGAGTGACGATGAGTGTGCTGCTAAGGAACCAG 443 ************************************************************ consensus_7344#0 AGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGA 589 consensus_7344#1 AGTCAGCTGTTCGGCATGAACCGCTGCTACCGCAACGTTCATCCCAACGTGCGGGTACGA 503 ************************************************************ consensus_7344#0 TTCGTCAGCTATCGCACGAAACGACCCATCGGGCTTATCAGCGCACAGTACGACAGCTTG 649 consensus_7344#1 TTCGTCAGCT-------------------------------------------------- 513 ********** consensus_7344#0 CTGCAGCCGCACACGATCTTCAGCGGAAGCACCGGCAGCAGAACCTGGACACCAGCCGGC 709 consensus_7344#1 ------------------------------------------------------------ consensus_7344#0 GGAGTCCGGCAGGATGGCGGTGTGCCGCTGCTCGATGCGCTCGGGTACAGGTGTGGAACA 769 consensus_7344#1 ------------------------------------------------------------ consensus_7344#0 GTGCTACCGGGTCCGCCGAGCATCAGATGCATTTCCACCACCAGCTGGCTTGGCAGATCA 829 consensus_7344#1 ------------------------------------------------------------ consensus_7344#0 ACTCGTCCTCGAAGGTTGAAGTCACGGTACAAACGTTAAAAAAAGAGAAATAATANTAAC 889 consensus_7344#1 ------------------------------------------------------------ consensus_7344#0 CAGGCATGTGAAACCTCGGGGGCA 913 consensus_7344#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||