These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1199 fasta sequence [TAAATCATGAAAGGATGTGAGCATTTTCTCTTTACAATCTTTATCCGTAGCGACTGCAATGAGTTCCCTCAATCAGGACCAGAACATCATGGACTCAATTTCATTTGCTTTAGTTTATTTATCAACAAAAGCCCAGAAAAAGATAATGTAATTAATCCCTCTTTCAGGTTGCAGAATTGATAAAAAAAACCATTATTCCTGCTGGCCTTTCTTACATTGTGGAATGGGCCGAATGTTAACATTTTATATGATACATTTTAAATCATCATTTTAATATCCTGTTTTTTATTGAATGCTTTTTTTGCTGCGCCTAATTTTGATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAACTTAAAAAGTTTCACCCGAAACTGTG-TTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGAAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCTCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCTAAATCTGGTAAAGCAAACCATTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCGTGTTATATCAGTTTGAATCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCA-----AAAACTACGCGTACCAATAGCAAAAAGGCAAATTGATAAAAAGAAGAGTTAAACATACAAAACATACAATTTCATCAACATGCGCTTTGAAGAGAATGC---AGAAGTAGAAGAAAAAGAAGAAGAAAAGTAAAAAAGGATTCTCGATACTTACTGATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAAAAAGAAAAGAAAAATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGTATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAGGAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAACTATACATATTATATCTATTCTATGAC] [+] EMBL BX613740 [TAAATCATGAAAGGATGTGAGCATTTTCTCTTTACAATCTTTATCCGTAGCGACTGCAATGAGTTCCCTCAATCAGGACCAGAACATCATGGACTCAATTTCATTTGCTTTAGTTTATTTATCAACAAAAGCCCAGAAAAAGATAATGTAATTAATCCCTCTTTCAGGTTGCAGAATTGATAAAAAAAACCATTATTCCTGCTGGCCTTTCTTACATTGTGGAATGGGCCGAATGTTAACATTTTATATGATACATTTTAAATCATCATTTTAATATCCTGTTTTTTATTGAATGCTTTTTTTGCTGCGCCTAATTTTGATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAACTTAAAAAGTTTCACCCGAAACTGTG TTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGAAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCTCCTTCTCTCTC ] [+] EMBL BX618297 [ CTTTCAGGTTGCAGAATTGATAAAAAAAACCCTTTTTCCTGCTGGCCTTTCTTACATTGTGGAATGGGCCGAATGTTAACATTTTATATGATACATTTTAAATCATCATTTTAATATCCTGTTTTTTATTGAATGCTTTTTTTGCTGCGCCTAATTTTGATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAACTTAAAAAGTTTCACCCGAAACTGTG TTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGAAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCTCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCTAAATCTAGTAAAGCAAACCATTACAGGTCTTGAAAACACTTTCCTGAAGCTGGTTCATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCATGTTATATCAGTTTGAATCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCA AAAACTACGCGTACCAATAGCAAAAAGGCAAATTGATAAAAAGAAGAGTTAAACATACAAAACATACAATTTCATCAACATGCGCTTTGAAGAGAATGC AGAAGTAGAAGAAAAAGAAGAAGAAAAGTAAAAAAGGATTCTCGATACTTACTGATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGAC ] [+] EMBL BX611497 [ atTTTTAATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAATTTAAAAAGTTTCACCCGAAACTGTGTTTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGGAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCCCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCTAAATCTGGTAAAGCAAACCATTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCGTGTTATATCAGTTTGAATCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCAAACACAAAACTACGCGTACCAATAGCAAAAAG ] [+] EMBL BX616055 [ CCCGAAAACCAATTTATTTTATGAATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGGAAACAAACGATACTACCGTTATGTTTAGGCTGGATATTATTTCCCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCTAAATCTGGTAAAGCAAACCATTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCGTGTTATATCAGTTTGAATCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCAAACACAAAACTACGCGTACCAATAGCAAAAAGGCAAATTGATAAAAAGAAGAGTTAAACATACAAAACATACCATTTCATCAACATGCGCTTTGAAGAGAATGCAGAAGAAGAAGAAGAAAAAGAAGAAGAAAAG GAAAAAGGATTCTCGATACTTACTGATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAAC ] [+] EMBL BM639249 [ CGTATGCAATACCA AAAACTACGCGTACCAATAGCAAAAAGGCAAATTGATAAAAAGAAGAGTTAAACGTACAAAACATACAATTTCATCAACATGCGCTTTGAAGAGAATGC AGAAGTAGAAGAAAAAGAAGAAGAAAAGTAAAAAAGGATTCTCGATACTTACTGATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAAAAAGAAAAGAAAAATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGTATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAGGAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAACTATACATATTATATCTATTCTATGAC] consensusID : consensus_7352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [ATGCCCCNAACACCCAACCTACGCGTACCAATAGCCNAANAGGCAAACTTGATCACANCAGCAAGCAGTTACAACATACCAAACATACCACTTTCGATCAACACTGCGCTTTGAAGAGAATGCAGAAGCAAGNAGAAGACAACAAGAAGAAGCAAACAGGCACAAAAGGATTCTCGATACTTACTCGCATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAGAAACAAAACAAAAATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGTATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAGGAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAACTATACATATTATATCTATTCTATGACAGAGAAAAATAAAGTATAACATAATTAATTGGAAAAAATAAAAAAAAAGCAGGC] [-] EMBL BX466746 [ATGCCCCNAACACCCAACCTACGCGTACCAATAGCCNAANAGGCAAACTTGATCACANCAGCAAGCAGTTACAACATACCAAACATACCACTTTCGATCAACACTGCGCTTTGAAGAGAATGCAGAAGCAAGNAGAAGACAACAAGAAGAAGCAAACAGGCACAAAAGGATTCTCGATACTTACTCGCATGTAAATCGAAAATGAAAGCAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGTAAACAATGCAAGCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAGAAACAAAACAAAAATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGTATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAGGAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAACTATACATATTATATCTATTCTATGACAGAGAAAAATAAAGTATAACATAATTAATTGGAAAAAATAAAAAAAAAGCAGGC] consensusID : consensus_7352#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [AGGCAGAAATCGGCACGAGGAGAGCTTCTAAATCTGGGTAAGCNCCACCACTTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATATCTGGTCGTGCGTGTTATATCANTTTGAATCCGCCCATCTTCCATGAATAATAAGGCGCGTATTTCAATACCCAACACCAAAACTACGCGTACCAAACACAAAACTACGCGTACCACATAGTCGAAAAAGGCAAATNTGATAAACAAGAACAGCTTTTACACTATCACAAACATATC] [+] EMBL BX467640 [AGGCAGAAATCGGCACGAGGAGAGCTTCTAAATCTGGGTAAGCNCCACCACTTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAAGGTAAACCCGATGCAGAATCTCTATATCTGGTCGTGCGTGTTATATCANTTTGAATCCGCCCATCTTCCATGAATAATAAGGCGCGTATTTCAATACCCAACACCAAAACTACGCGTACCAAACACAAAACTACGCGTACCACATAGTCGAAAAAGGCAAATNTGATAAACAAGAACAGCTTTTACACTATCACAAACATATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7352#0 TAAATCATGAAAGGATGTGAGCATTTTCTCTTTACAATCTTTATCCGTAGCGACTGCAAT 60 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 GAGTTCCCTCAATCAGGACCAGAACATCATGGACTCAATTTCATTTGCTTTAGTTTATTT 120 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 ATCAACAAAAGCCCAGAAAAAGATAATGTAATTAATCCCTCTTTCAGGTTGCAGAATTGA 180 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 TAAAAAAAACCATTATTCCTGCTGGCCTTTCTTACATTGTGGAATGGGCCGAATGTTAAC 240 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 ATTTTATATGATACATTTTAAATCATCATTTTAATATCCTGTTTTTTATTGAATGCTTTT 300 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 TTTGCTGCGCCTAATTTTGATGTTGTGTTCAATAAGTCGGATATGGTGCTTTTTTAACTT 360 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 AAAAAGTTTCACCCGAAACTGTGTTTTCCTTCCAAACCCGAAAACCAATTTATTTTATGA 420 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 ATAAAAATGGGAAAATGTAGTGTTCTTGTAGTAAACAGAAAACAAACGATACTACCGTTA 480 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 TGTTTAGGCTGGATATTATTTCTCCTTCTCTCTCTCACTCTAAATAATACTAGAGCTTCT 540 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 AAATCTGGTAAAGCAAACCATTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTA 600 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 TGTTAAAGGTAAACCCGATGCAGAATCTCTATTCTGTCGTGCGTGTTATATCAGTTTGAA 660 consensus_7352#1 ------------------------------------------------------------ consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 TCCGCCATCTTCAATGAATAATAGGGCGCGTATGCAATACCAAAAACTACGCGTACCAAT 720 consensus_7352#1 ---------------------------ATGCCCCNAACACCCAAC-CTACGCGTACCAAT 32 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 AGC-AAAAAGGCAAA-TTGATAAAAA----GAAGAGTTA-AACATACAAAACAT-ACAAT 772 consensus_7352#1 AGCCNAANAGGCAAACTTGATCACANCAGCAAGCAGTTACAACATACCAAACAT-ACCAC 91 consensus_7352#2 --------AGGCAGAAATCGGCACGA-GGAGAGCTTCTAAATCTGGGTAAGCNCCACCAC 51 ***** * * * * ** * * ** * ** * consensus_7352#0 TTC---ATCAACA-TGCGCTTTGAAGAGAATGCAGAAGTAGAAGAAA------AAGAAGA 822 consensus_7352#1 TTTC-GATCAACACTGCGCTTTGAAGAGAATGCAGAAGCAAGNAGAAGACAACAAGAAGA 150 consensus_7352#2 TTAAAGGTCTTGAACACACTTTCCTTAAGCTGGTTAATTATGTTAAA--------GGTAA 103 ** ** * * **** * ** ** * ** * * consensus_7352#0 AGAAAA---GTAAAAAAGGATTCTCGATACTTACTG----ATGTAAATCGAAAATGAAAG 875 consensus_7352#1 AGCAAACAGGCACAAAAGGATTCTCGATACTTACTCG--CATGTAAATCGAAAATGAAAG 208 consensus_7352#2 ACCCGA----TGCAGAA----TCTCTATATCTGGTCGTGCGTGTTATATCANTTTGAATC 155 * * * ** **** *** * * *** * * **** consensus_7352#0 CAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGT---AAACAATGCAA 932 consensus_7352#1 CAAATGAAACACACTCATAAACACTGACACACCCTCACACGTGAGT---AAACAATGCAA 265 consensus_7352#2 CGCCCATCTTCCATGAATAATAAGGCGCGTATTTCAATACCCAACACCAAAACTACGCGT 215 * ** **** * * * * ** * **** * ** consensus_7352#0 GCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAAAAAGAAAAGAAAA 992 consensus_7352#1 GCAAAACATCAACATGTACCAACAGTACAGAAAAGAAAGGCACACAGAAACAAAACAAAA 325 consensus_7352#2 ACCAAACACAAAACTACGCGTACCACATAGTCGAAAAAGGCAAATNTGA--TAAACAAGA 273 * ***** ** * * ** * ** * ******* * * *** ** * consensus_7352#0 ATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGT 1052 consensus_7352#1 ATGCATTCTCCAACATATATAAAAAACAAACACACGTAATAAGCAACGAGCAAACAATGT 385 consensus_7352#2 ACAGCTTTTACA----CTATCACAAACATATC---------------------------- 301 * ** * ** *** * ***** * consensus_7352#0 ATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAG 1112 consensus_7352#1 ATAAGGATGTGCGATAGACGTACCACCATGATGCAAGACAGGTGAAACAGATGAGAGAAG 445 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 GAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAA 1172 consensus_7352#1 GAGAAAGGAACGAAACCAACAAAGCGAGATCAACTGAAACAAACAAAACCAGAATAAGAA 505 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 CTATACATATTATATCTATTCTATGAC--------------------------------- 1199 consensus_7352#1 CTATACATATTATATCTATTCTATGACAGAGAAAAATAAAGTATAACATAATTAATTGGA 565 consensus_7352#2 ------------------------------------------------------------ consensus_7352#0 --------------------- consensus_7352#1 AAAAATAAAAAAAAAGCAGGC 586 consensus_7352#2 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||