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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1021 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTCCAAGGGAAACAAGCAGCTTGTGAAACTGAGTTAGTTTTCGGCCTTTAAAATGAAGATCGGACTGTGTGCATTCAGCGGGTTCAAAATCTACCCGGCCAGCGGCAAGACCCTTGTCAAAGCCGATGGAAAGACGTTCACCTTCCTGAACAAAAAATGTGAGCGTTCGTTCCTGATGAAGCGCAACCCGCGCAAGGTGAAATGGACGGTGCTGTACCGCCGCAAGCACAAGAAGGGTATTGTGGAGGAAGCCGCCAAGAAGCGTACCCGCCGCACGCAGAAATTCCAGCGTGCCATCGTCGGTGCTTCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGACCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTAAGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTTTTACATTCATACTTGTTTCTTACCTGAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGTTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAAATAAGAAAACAACCACACTACCAGTGGATGTAAAATTTTCGTGTTGCGTCTAGTTGATATTTAGTTCGCATGTATGTAGAACTAAACGAAAGAACTCGCATAGCCAGTACTTTTCGCCACCAGTACCCAGGATTGGTTTCTTTCAACCAAGAGAGAACAATTCTGTATAGAAAGTGATGAAGTTAGTCTTTATTTTGTTTACAAAGTAACGGTTGTACAGCAATACGGACGATTTCCGCTATACGTGACACAAAGACGACATAATATTTACATCTAGTAAACAGAGGACATTGAGAGTTTTACGATAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGT]
[+] EMBL BM618673 [CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTCCAAGGGAAACAAGCAGCTTGTGAAACTGAGTTAGTTTTCGGCCTTTAAAATGAAGATCGGACTGTGTGCATTCAGCGGGTTCAAAATCTACCCGGCCAGCGGCAAGACCCTTGTCAAAGCCGATGGAAAGACGTTCACCTTCCTGAACAAAAAATGTGAGCGTTCGTTCCTGATGAAGCGCAACCCGCGCAAGGTGAAATGGACGGTGCTGTACCGCCGCAAGCACAAGAAGGGTATTGTGGAGGAAGCCGCCAAGAAGCGTACCCGCCGCACGCAGAAATTCCAGCGTGCCATCGTCGGTGCTTCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAGCAGGCAATCAA ]
[+] EMBL BM643599 [ ccGCGGACGCGTGGGGTTTTCCAAGGGAAACAAGCAGCTTGTGAAACTGAGTTAGTTTTCGGCCTTTAAAATGAAGATCGGACTGTGTGCATTCAGCGGGTTCAAAATCTACCCGGCCAGCGGCAAGACCCTTGTCAAAGCCGATGGAAAGACGTTCACCTTCCTGAACAAAAAATGTGAGCGTTCGTTCCTGATGAAGCGCAACCCGCGCAAGGTGAAATGGACGGTGCTGTACCGCCGCAAGCACAAGAAGGGTATTGTGGAGGAAGCCGCCAAGAAGCGTACCCGCCGCACGCAGAAATTCCAGCGTGCCATCGTCGGTGCTTCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGACCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTAAGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTTTTACATTCATACTTGTTTCTTACCTGAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGTTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAAA ]
[+] EMBL CNS093VE [ aatgcacacGTTTT CAAGGGAAACAAGCAGCTTGTGAAA TGAGTTAGTTTTCGGCCTTTAAAATGAAGATCGGACTGTGTGCATTCAGCGGGTTCAAAATCTACCCGGCCAGCGGCAAGACCCTTGTCAAAGCCGATGGAAAGACGTTCACCTTCCTGAACAAAAAATGTGAGCGTTCGTTCCTGATGAAGCGCAACCCGCGCAAGGTGAAATGGACGGTTCTGTACCGCCGCAAGCACAAGAAGGGTATTGTGGAGGAAGCCGCCAAGAAGCGTACCCGCCGCACGCAGAAATTCCAGCGTGCCATCGTCGGTGCTTCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGACCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTAAGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTTTTACATTCATACTTGTTTCTTACCTGAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGTTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAAATAAGAAAACAACCACACTACCAGTGGATGTAAAATTTTCGTGTTGCGTCTAGTTGATATTTAGTTCGCATGTATGTAGAACTAAACGAAAGAACTCGCATAGCCAGTACTTTTCGCCACCAGTACCCAGGATTGGTTTCTTTCAACCAAGAGAGAACAATTCTGTATAGAAAGTGATGAAGTTAGTCTTTATTTTGTTTACAAAGTAACGGTTGTACAGCAATACGGACGATTTCCGCTATACGTGACACAAAGACGACATAATATTTACATCTAGTAAACAGAGGACATTGAGAGTTTTACGATAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGT]
consensusID : consensus_7360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 977 fasta sequence
[CCCGGGTAGACCGACGTGTAGAAAACGTGTTGAGCGTTTCGTGTGTCGAAAATTTCCCAATTTAATTCGAAATGGGGTTCGTTAAGGTAGTGAAGGTTGGTCTGACCAACTATGCCGCCGCCTACTGCACCGGTCTGCTCGTTGCTCGCCGCATCCTGCAGAAGCTGCGCCTGGACACGCTGTACGCCGGCTGTACCGATGTGACCGGCGAGGAGTACCTGGTCGAGCCGGTCGATGAAGGACCGGCCGCCTTCCGGTGCTACCTGGATGTGGGTCTGGCCCGCACCACCACCGGTGCCCGTGTGTTCGGCGCCATGAAGGGTGCCGTCGATGGCGGACTGAACATTCCGCACTCGGTCAAGCGTTTCCCGGGCTACAGCGCCGAGAACAAGAGCTTCAACGCGGAAATGCACCGTGACCACATCTTCGGCCTGCACGTCGCCAACTACATGCGCACGCTGGAGGAGGAGGACGAGGAGGCGTTCAAGCGCCAGTTCAGCAAGTACATCTCGCTGGGCATCAAGGCTGATGATATCGAAAACATCTACAAGAACGCCCACGCCTCCATCCGCAAGGATCCCTCCTTCACGAAGAAACCC-GAGAAGAAGGTCACCAAGAAGCGGTGGACGATGGCCAAGTTGCCGCTCGCCGCCCGCAAGGAGAAGATCGCGAACACAAAGGCCGACTTCCTGGCCAAGATCCAGGCCGACGTCGAAGCCTAAGCGGGCTGCCCCGTCGCCGTCGACCGTTCTTCTTCTCTTCGTGGTGGTGTATCATCCTTGTTCTGCCCTGTTCTTCGCCTGTGCGAAGGATGAGGCGTGCAAAAGAAAAAAAAAACATTCGTTTATTTTTTGCTTCTACTATTCGCTGAAGATAAACATTATGTTTGGACGCGGTGTGAGTGTGTTTTTGGCGCGATCGGTGTCGTTTAACTGTTAGAGGTGGTAGTAGTGTGCGAGTGTGTGGTGTGCCGCAAT]
[+] EMBL CNS08D8K [CCCGGGTAGCACGACGTGTAGAAAACGTGTTGAGCGTTTCGTGTGTCGAAAATTTCCCAATTTAATTCGAAATGGGGTTCGTTAAGGTAGTGAAGGTTGGTCTGACCAACTATGCCGCCGCCTACTGCACCGGTCTGCTCGTTGCTCGCCGCATCCTGCAGAAGCTGCGCCTGGACACGCTGTACGCCGGCTGTACCGATGTGACCGGCGAGGAGTACCTGGTCGAGCCGGTCGATGAAGGACCGGCCGCCTTCCGGTGCTACCTGGATGTGGGTCTGGCCCGCACCACCACCGGTGCCCGTGTGTTCGGCGCCATGAAGGGTGCCGTCGATGGCGGACTGAACATTCCGCACTCGGTCAAGCGTTTCCCGGGCTACAGCGCCGAGAACAAGAGCTTCAACGCGGAAATGCACCGTGACCACATCTTCGGCCTGCACGTCGCCAACTACATGCGCACGCTGGAGGAGGAGGACGAGGAGGCGTTCAAGCGCCAGTTCAGCAAGTACATCTCGCTGGGCATCAAGGCTGATGATATCGAAAACATCTACAAGAACGCCCACGCCTCCATCCGCAAGGATCCCTCCTTCACGAAGAAACCC GAGAAGAAGGTCACCAAGAAGCGGTGGACGATGGCCAAGTTGCCGCTCGCCGCCCGCAAGGAGAAGATCGCGAACACAAAGGCCGACTTCCTGGCCAAGATCCAGGCCGACGTCGAAGCCTAAGCGGGCTGCCCCGTCGCCGTCGACCGTTCTTCTTCTCTTCGTGGTGGTGTATCATCCTTGTTCTGCCCTGTTCTTCGCCTGTGCGAAGGATGAGGCGTGCAAAAGAAAAAAAAAACATTCGTTTATTTTTTGCTTCTACTATTCGCTGAAGATAAACATTATGTTTGGACGCGGTGTGAGTGTGTTTTTGGCGCGATCGGTGTCGTTTAACTGTTAGAGGTGGTAGTAGTGTGCGAGTGTGTGGTGTGCCGCAAT]
[+] EMBL CNS08QZK [ tagacACCGACGTGTAGAAAACGTGTTGAGCGTTTCGTGTGTCGAAAATTTCCCAATTTAATTCGAAATGGGGTTCGTTAAGGTAGTGAAGGTTGGTCTGACCAACTATGCCGCCGCCTACTGCACCGGTCTGCTCGTTGCTCGCCGCATCCTGCAGAAGCTGCGCCTGGACACGCTGTACGCCGGCTGTACCGATGTGACCGGCGAGGAGTACCTGGTCGAGCCGGTCGATGAAGGACCGGCCGCCTTCCGGTGCTACCTGGATGTGGGTCTGGCCCGCACCACCACCGGTGCCCGTGTGTTCGGCGCCATGAAGGGTGCCGTCGATGGCGGACTGAACATTCCGCACTCGGTCAAGCGTTTCCCGGGCTACAGCGCCGAGAACAAGAGCTTCAACGCGGAAATGCACCGTGACCACATCTTCGGCCTGCACGTCGCCAACTACATGCGCACGCTGGAGGAGGAGGACGAGGAGGCGTTCAAGCGCCAGTGCAGCAAGTACATCTCGCTGGGCATCAAGGCTGATGATATCGAAAACATCTACAAGAACGCCCACGCCTCCATCCGCAAGGATCCCTCCTTCACGAAGAAACCC GAGAAGAAGGTCACCAAGAAGCGGTGGACGATGGCCAAGTTGCCGCTCGCCGCCCGCAAGGAGAAGATCGCGAACAC AAGGCCGACTTCCTGGCCAAGATCCAGGCCGACGTCGAAGCCTAAGCGGGCTGCCCCGTCGCCGTCGACCGTTCTTCTTCTCTTCGTGGTGGTGTATCATCCTTGTTCTGCCCT ]
[+] EMBL CNS08O4H [ ACCGACGTGTAGAAAACGTGTTGAGCGTTTCGTGTGTCGAAAATTTCCCAATTTAATTCGAAATGGGGTTCGTTAAGGTAGTGAAGGTTGGTCTGACCAACTATGCCGCCGCCTACTGCACCGGTCTGCTCGTTGCTCGCCGCATCCTGCAGAAGCTGCGCCTGGACACGCTGTACGCCGGCTGTACCGATGTGACCGGCGAGGAGTACCTGGTCGAGCCGGTCGATGAAGGACCGGCCGCCTTCCGGTGCTACCTGGATGTGGGTCTGGCCCGCACCACCACCGGTGCCCGTGTGTTCGGCGCCATGAAGGGTGCCGTCGATGGCGGACTGAACATTCCGCACTCGGTCAAGCGTTTCCCGGGCTACAGCGCCGAGAACAAGAGCTTCAACGCGGAAATGCACCGTGACCACATCTTCGGCCTGCACGTCGCCAACTACATGCGCACGCTGGAGGAGGAGGACGAGGAGGCGTTCAAGCGCCAGTTCAGCAAGTACATCTCGCTGGGCATCAAGGCTGATGATATCGAAAACATCTACAAGAACGCCCACGCCTCCATCCGCAA GATCCCTCCTTCACGAAGAAACCCAGAGAAGA ]
[+] EMBL CNS08IPL [ GACGTGTAGAAAACGTGTTGAGCGTTTCGTGTGTCGAAAATTTCCCAATTTAATTCGAAATGGGGTTCGTTAAGGTAGTGAAGGTTGGTCTGACCAACTATGCCGCCGCCTACTGCACCGGTCTGCTCGTTGCTCGCCGCATCCTGCAGAAGCTGCGCCTGGACACGCTGTACGCCGGCTGTACCGATGTGACCGGCGAGGAGTACCTGGTCGAGCCGGTCGATGAAGGACCGGCCGCCTTCCGGTGCTACCTGGATGTGGGTCTGGCCCGCACCACCACCGGTGCCCGTGTGTTCGGCGCCATGAAGGGTGCCGTCGATGGCGGACTGAACATTCCGCACTCGGTCAAGCGTTTCCCGGGCTACAGCGCCGAGAACAAGAGCTTCGACGCGGAAATGCACCGTGACCACATCTTCGGCCTGCACGTCGCCAACTACATGCGCACGCTGGAGGAGGAGGACGAGGAGGCGTTCAAGCGCCAGTTCAGCAAGTACATCTCGCTGGGCATCAAGGCTGATGATATCGAAAACATCTACAAGAACGCCCACGCCTCCATCCGCAAGGATCCCTCCTTCACGAAGAAACCC GAGAAGAAGGTCACCAAGAAGCGGTGGACGATGGCCAAGTTGCCGCTCGCCGCCCGCAAGGAGAAGATCGCG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7360#0 -------CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTCCAAGGGAAACAAGCAGCTTG 53
consensus_7360#1 CCCGGGTAGACCGACGTGTAGA-AAACGTGTTGAGCGTTTCGTGTGTCGAAAATTTCCCA 59
* **** ** * *** ** * * ** * * * ** *
consensus_7360#0 --TGAAACTGAGTTAGTTTTCGGCCTTTAAAATGAAGATCGGACTGTGTGCATTCAGCGG 111
consensus_7360#1 ATTTAATTCGAAATGGGGTTCG-TTAAGGTAGTGAAGGTTGGTCTG------ACCAACTA 112
* ** ** * * **** * ***** * ** *** ** *
consensus_7360#0 GTTCAAAATCTACCCGGCCAG-CGGCAAGACCCTTGTCAAAGCCGATGGAAA--GACGTT 168
consensus_7360#1 TGCCGCCGCCTACTGCACCGGTCTGCTCGTTGCTCGCCGCATCCTGCAGAAGCTGCGCCT 172
* **** ** * * ** * ** * * * ** *** * *
consensus_7360#0 CACCTTCCTGAACAAAAAATGTGAGCGTTCGTTCCTGATGAAGCGCAACC---CGCGCAA 225
consensus_7360#1 GGACACGCTGTACGCCGGCTGT-ACCGAT-GTGACCGGCGAGGAGTACCTGGTCGAGCCG 230
* *** ** *** * ** * ** * * ** * * * * ** **
consensus_7360#0 GGTGA--AATGGACGGTGCTGTACCGCCGCAAGCACAAGAAGGGTATTGTGGAGGAAGCC 283
consensus_7360#1 GTCGATGAAGGACCGGCCGCCTTCCGGTGCTACCTGGATGTGGGTCTGGCCCGCACCACC 290
* ** ** * *** * *** ** * * * **** * * **
consensus_7360#0 GCCAAGAA--GCGTACCCGCCGCACGCAGAAATTCCAGCG-TGCCATCGTCGGTGCTTCG 340
consensus_7360#1 ACCGGTGCCCGTGTGTTCGGCGCCATGAAGGGTGCCGTCGATGGCGGACTGAACATTCCG 350
** * ** ** *** * * ** ** ** * * * **
consensus_7360#0 CTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAG 400
consensus_7360#1 CACTCGGTCA----AGCGTTTCCCGGGCTACAGCGCCGAGAACAAGAGCTTCAACGCGGA 406
* ***** ** ** * * * *** * ** * ** ** ****
consensus_7360#0 CAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAG--GCTAAGCAGACCGACAAGAAGCCGA 458
consensus_7360#1 AATGCA-CCGTGACCACATCTTCGGCCTGCACGTCGCCAACTACATGCGCACGCTGGAGG 465
* *** * * * * *** * * ** ** * * ** * * *
consensus_7360#0 AAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTAAGGTCGCCCAGAAGG 518
consensus_7360#1 AGGAGGACGAGGAGGCGTTCAAGCGCCAGTTCAGCAAGTACATCTCGCTGGGCATCAAGG 525
* * * * ** **** *** * *** * * * * * ****
consensus_7360#0 CTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTTTTACATTCATACTTG 578
consensus_7360#1 CTGA---TGATATCGAAAACAT-CTACAAGAA-CGCCCAC-GCCTCCATCCGCAAGGATC 579
*** * * * ** * * ***** ** ** * * * ** *
consensus_7360#0 TTTCTTACCTGAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGTTATAAGCTGGTACCA 638
consensus_7360#1 CCTCCTTCACGAAGAAACCCGAGAAGAAGGTCACCAAGAAGCGGTGG-ACGATGG--CCA 636
** * * **** ** * * *** * **** * * *** ***
consensus_7360#0 TCTGGGCTTTGTCGGGCCGAAAATGTAATATTG-GAGAGTATAAAATAAGAAAACAACCA 697
consensus_7360#1 AGTTGCCGCTCGCCGCCCGCAAGGAGAAGATCGCGAACACAAAGGCCGACTTCCTGGCCA 696
* * * * * * *** ** ** ** * ** * * * ***
consensus_7360#0 CACTACCAGTGGATGT-AAAATTTTCGTGTTGCGTCTAGTTGATATTTAGTTCGCATGTA 756
consensus_7360#1 AGATCCAGGCCGACGTCGAAGCCTAAGCGGGCTGCCCCGTCGCCGTCGA--CCGTTCTTC 754
* * * ** ** ** * * * * * ** * * * ** *
consensus_7360#0 TGTAGAACTAAACGAAAGAACTCGCATAGCCAGTACTTTTCGCCACCAGTACCCAGGATT 816
consensus_7360#1 TTCTCTTCGTGGTGGTGTATCATCCTTGTTCTGCCCTGTTCTTCGCCTGTGCGAAGGATG 814
* * * * * * * * * ** *** * ** ** * *****
consensus_7360#0 GGTTTCTTTCAACCAAGAGAGAACAATTCTGTATAGAAAGTGATGAAGTTAGTCTTTATT 876
consensus_7360#1 AGGCGTGCAAAAGAAAAAAAAAACATTCGTTTATTT------------TTTGCTTCTACT 862
* ** ** * * **** * * *** ** * * ** *
consensus_7360#0 TTGTTTACAAAGTAACGGTTGTACAGCAATACGGACGATTTCCGCTATACGTGACACAAA 936
consensus_7360#1 ATTCGCTGAAGATAAACATTATGTTTGGACGCGGTGTGAGTGTGTTTTTGGCGCGATCGG 922
* ** *** ** * * *** * * * * * * *
consensus_7360#0 GACGACATAATATTTACATCTAGTAAACAGAGGACATTGAGAGTTTTACGATAAAAAAAA 996
consensus_7360#1 TGTCGTTTAACTGTTAGAGGTGGTAGTAGTGTGCGAGTGTGTGGTGTGCCGCAAT----- 977
*** *** * * *** * * ** * * * * * **
consensus_7360#0 AAAAAAAAAAAAAAAGGCCACATGT 1021
consensus_7360#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||