These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2007 fasta sequence [CCGCGGACGCGTGGGCTCGGGTACGACTGGCATCCGGAGTGTTTGCGGTGCGAGGAGTGCGGCAAGCGCCTTAACCCGGGACAGCACGCCGAACACAAAGGTGTGCCGTACTGCCATGTGCCGTGCTACGGTGCCCTATTTGGGCCGCAGCTGTTCGGCCACGGTACCCGGGTGGAGTCGCACAAGAGCTTCGGCCAGCCGGATCAGAAAAAGCAGGCAGTGCAGCGCTCGCCAGCCGGCCCGGCCATACCCAAGGGGCACCTGGAGTCGAAGCTGAAGTCGTACAACCAGTTCCACAACAACAAGAGCATGGAGATACGGAGCCGCGAGGTGAACGGGCGGCTGGTGCTGGAGGGCGCCCTGCGCATCTACTGGGGGGTGCAGGGAATGATCCACCTGAAGGAGGACGACGACCAGCGCACCGTGGTGACGGTCCGGAAGCGTAACTCGTACCGCCAAAGCACGCCCGCCTCGCTGGCCCACGCTCACGCGACGAGCGATGGGGAGGAGGAGGGCAACGAAAAGGAAAACCACCCGAACCATGCGGACCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCGACGGGGAG-CCGGTGCGATGGGCGTCAGCACGTCCAGCCTGACCGAGCCGTGCGACAGCAACAACGACACGACCACCATCTCGGAGAGCATCTCGTACGACACGCTCAGCCTGTCGTCCGAGCTCAACTCGAACTTCGACTCGAAGCCGGTCTCGTCGAGCGAATCGTCCAAGGAGGTGTCGCCGAGCCACGCGGGCAAGTACGTGACGCTGCCGCCGAAGCTGGACGTGAAGCAGCTCGACTGGGACGAGATCGACGAGCTGCTGCAGGTGGAGCGCAAGCTGGACGAGAGCGAGAAGCTGTACCGGACGATGCCGTCCCCGCTGGCGACCGGCGGCGGTTCGGGCGGGTCCGGCGGCGACCGCAGCCTGGCGAGCGAGAGCGTCACCGATACGGATTACAAGACGCTCACGCCCAACACGGCCACCGGGTCGTCGG-GCGGGTCGGGCGCCGGCTCGGGCGACAGCGACCGGACGACGACCGGCGGGCCGGACACGTCCACGAGCGCGGCCACCACCAGCGCGGCGACCAACGGGGACGATGACTTTCGCACGCCGGAAGCGACGCTCCGGTCGCACGACTTCGAAGCGTTCAAGATGCAGATTAGCCGCGAGTTTATCAGCAGCACGGCGGAGATGGGCAACACGGACGGTACGCTGAAGCAGAACCAGCCGATCGATCCGGCCCGGATCAACGATTCGCTCAAGCTGTACAATGACGGCGTCATGAACCGGAGCCTGTCGGACGAGCAGTGCCGGG---AATGCGATGTTTTCCCTGCCGGCCGGCAACATCACGGGATCGTTCCACGTGGAGGCCGGTACGAACGAGGACGACGACTCAACGCTGCGCCATCCGGCCAACGGCAT-CTACGCGTCGCCCAGTCACGGCCGACAGTCGGCCAACGGTACGCCCAAGAAGCGGATGCACCTGCAGCGTGC-GGC-GCAACC-GGCCGG-ACCCGAC-GCACCGACCTCGTCGGAGGCTACCACGAACG-GTGCCGTTACGTC-GCCG-G-GCACGGAC-ACGGGACAGCTGGAC-GGCCGATCGGGGTCTGCTGCGCTCCAATGTCCCAGGGCAACCACTACTCGGGCAACAGCTTCATGGACAGCGATGTGGACGACGATAGCGGCTGTGGGGCGGTAGTGGCGGGACCGGCTCGGGTACGCTCAAACCCTCCGACAAGCCGCCGTCCTCGATCCACATCCGGATGGACTGTTACGACGAGCTGGAGAGCCCCTCGTCCGGTCAGTGCGATCACGCCGTCGCGAGGACGGTGAGCTGACCGCGTGACGGCGACACGCTAACGACGGCGACAGACGACGGCGACGAAGCAAGCGTCCGAGTACAGACCAGCATCAGCGGCACCGGTCACGGACGANGGGGTCGTGCTGGGAAGCCCGAAGAATGGCTCGACGGATCAGCGCCGTCGGCAC] [+] EMBL BM577276 [CCGCGGACGCGTGGGCTCGGGTACGACTGGCATCCGGAGTGTTTGCGGTGCGAGGAGTGCGGCAAGCGCCTTAACCCGGGACAGCACGCCGAACACAAAGGTGTGCCGTACTGCCATGTGCCGTGCTACGGTGCCCTATTTGGGCCGCAGCTGTTCGGCCACGGTACCCGGGTGGAGTCGCACAAGAGCTTCGGCCAGCCGGATCAGAAAAAGCAGGCAGTGCAGCGCTCGCCAGCCGGCCCGGCCATACCCAAGGGGCACCTGGAGTCGAAGCTGAAGTCGTACAACCAGTTCCACAACAACAAGAGCATGGAGATACGGAGCCGCGAGGTGAACGGGCGGCTGGTGCTGGAGGGCGCCCTGCGCATCTACTGGGGGGTGCAGGGAATGATCCACCTGAAGGAGGACGACGACCAGCGCACCGTGGTGACGGTCCGGAAGCGTAACTCGTACCGCCAAAGCACGCCCGCCTCGCTGGCCCACGCTCACGCGACGAGCGATGGGGAGGAGGAGGGCAACGAAAAGGAAAACCACCCGAACCATGCGGACCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCGACGGGGAGCCCGGTGCGATGGGCGTCAGCACGTCCAGCCTGACCG ] [+] EMBL BM599253 [ ccgGGAGATACGGAGCCGCGAGGTGAACGGGCGGCTGGTGCTGGAGGGCGCCCTGCGCATCTACTGGGGGGTGCAGGGAATGATCCACCTGAAGGAGGACGACGACCAGCGCACCGTGGTGACGGTCCGGAAGCGTAACTCGTACCGCCAAAGCACGCCCGCCTCGCTGGCCCACGCTCACGCGACGAGCGATGGGGAGGAGGAGGGCAACGAAAAGGAAAACCACCCGAACCATGCGGACCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCGACGGGGAG CCGGTGCGATGGGCGTCAGCACGTCCAGCCTGACCGAGCCGTGCGACAGCAACAACGACACGACCACCATCTCGGAGAGCATCTCGTACGACACGCTCAGCCTGTCGTCCGAGCTCAACTCGAACTTCGACTCGAAGCCGGTCTCGTCGAGCGAATCGTCCAAGGAGGTGTCGCCGAGCCACGCGGGCAAGTACGTGACGCTGCCGCCGAAGCTGGACGTGAAGCAGCTCGACTGGGACGAGATCGACGAGCTGCTGCAGGTGGAGCGCAAGCTGGACGAGAGC ] [+] EMBL BM646629 [ ccgGGAGGTGTCGCCGAGCCACGCGGGCAAGTACGTGACGCTGCCGCCGAAGCTGGACGTGAAGCAGCTCGACTGGGACGAGATCGACGAGCTGCTGCAGGTGGAGCGCAAGCTGGACGAGAGCGAGAAGCTGTACCGGACGATGCCGTCCCCGCTGGCGACCGGCGGCGGTTCGGGCGGGTCCGGCGGCGACCGCAGCCTGGCGAGCGAGAGCGTCACCGATACGGATTACAAGACGCTCACGCCCAACACGGCCACCGGGTCGTCGGTGCGGGTCGGGCGCCGGCTCGGGCGACAGCGACCGGACGACGACCGGCGGGCCGGACACGTCCACGAGCGCGGCCACCACCAGCGCGGCGACCAACGGGGACGATGACTTTCGCACGCCGGAAGCGACGCTCCGGTCGCACGACTTCGAAGCGTTCAAGATGCAGATTAGCCGCGAGTTTATCAGCAGCACGGCGGAGATGGGCAACACGGACGGTACGCTGAAGCAGAACCAGCCGATCGATCCGGCCCGGATCAACGATTCGCTCAAGCTGTACAATGACGGCGTCATGAACCGGAGCCTGTCGGACGA ] [+] EMBL BM625710 [ ccgGCAAGCTGGACGAGAGCGAGAAGCTGTACCGGACGATGCCGTCCCCGCTGGCGACCGGCGGCGGTTCGGGCGGGTCCGGCGGCGACCGCAGCCTGGCGAGCGAGAGCGTCACCGATACGGATTACAAGACGCTCACGCCCAACACGGCCACCGGGTCGTCGG GCGGGTCGGGCGCCGGCTCGGGCGACAGCGACCGGACGACGACCGGCGGGCCGGACACGTCCACGAGCGCGGCCACCACCAGCGCGGCGACCAACGGGGACGATGACTTTCGCACGCCGGAAGCGACGCTCCGGTCGCACGACTTCGAAGCGTTCAAGATGCAGATTAGCCGCGAGTTTATCAGCAGCACGGCGGAGATGGGCAACACGGACGGTACGCTGAAGCAGAACCAGCCGATCGATCCGGCCCGGATCAACGATTCGCTCAAGCTGTACAATGACGGCGTCATGAACCGGAGCCTGTCGGACGAGCAGTGCCGGG AATGCGATGTTTTCCCTGCCGGCCGGCAACATCACGGGATCGTTCCACGTGGAGGCCGGTACGAACGAGGACGACGACTCAACGCTGCGCCATCCGGCCAACGGCAT CTACGCGT ] [+] EMBL BM606523 [ acccacGCGT CCG TACGGATTACAAGACGCTCACGCCCAACACGGCCACCGGGTCGTCGG GCGGGTCGGGCGCCGGCTCGGGCGACAGCGACCGGACGACGACCGGCGGGCCGGACACGTCCACGAGCGCGGCCACCACGAGCGCGGCGACCAACGGGGACGATGACTTTCGCACGCCGGAAGCGACGCTCCGGTCGCACGACTTCGAAGCGTTCAAGATGCAGATTAGCCGCGAGTTTATCAGCAGCACGGCGGAGATGGGCAACACGGACGGTACGCTGAAGCAGAACCAGCCGATCGATCCGGCCCGGATCAACGATTCGCTCAAGCTGTACAATGACGGCGTCATGAACCGGAGCCTGTCGGACGAGCAGTGCC GG AATGCGATGTTTTCCCTGCCGGCCGGCAACATCACGGGATCGTTCCACGTGGAGGCCGGTACGAACGAGGACGACGACTCAACGCTGCGCCATCCGGCCAACGGCAT CTACGCGTCGCCCAGTCACGGCCGACAGTCGGCCAACGGTACGCCCAAGAAGCGGATGCACCTGCAGCGTGC GGC GCAACC GGCCGG ACCCGAC GCACCGACCTCGTCGGAGGCTACCACGAACG GTGCCGTTACGTC GCCG G GCACGGAC ACGGGACAGCTGGAC GGCCGATCGGGG ] [+] EMBL AL934732 [ atTGCCGAGTTAAATGCGATGTTTTCCCTGCCGG CGGC ANATCACGGGATCGTTCCACGTGGAGGCCGGTACGAACGAGGACGACGACTCAACGCTGCGCCATCCGGCCAACGGCATACTACGCGTCGCCCAGTCACGGCCGACAGTCGGCCAACGGTACGCCCAAGAAGCGGATGCACCTGCAGCGTGCTGGCTGCAACCTGGCCGGTACCCGACTGCACCGACCTCGTCGGAGGCTACCACGAACGTGTGCCGTTACGTCTGCCGTGTGCACGGACTAC GGACAGCTGGACTTGCCGATCGGGGTCTGCTGCGCTCCAATGTCCCAGGGCAACCACTACTCGGGCAACAGCTTCATGGACAGCGATGTGGACGACGATAGCGGCTGTGGGGCGGTAGTGGCGGGACCGGCTCGGGTACGCTCAAACCCTCCGACAAGCCGCCGTCCTCGATCCACATCCGGATGGACTGTTACGACGAGCTGGAGAGCCCCTCGTCCGGTCAGTGCGATCACGCCGTCGCGAGGACGGTGAGCTGACCGCGTGACGGCGACACGCTAACGACGGCGACAGACGACGGCGACGAAGCAAGCGTCCGAGTACAGACCAGCATCAGCGGCACCGGTCACGGACGANGGGGTCGTGCTGGGAAGCCCGAAGAATGGCTCGACGGATCAGCGCCGTCGGCAC] consensusID : consensus_7362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CCGCCCACGCGTCCGCGATGTTTTCCCTGCCGGCCGGCAACATCACGGGATCGTTCCACGTGGAGGCCGGTACGAACGAGGACGACGACTCTACGCTGCGCCATCCGGACAACGGCATCTACGCGTCGCCCAGTCACGGCCGACAGTCGGCCAACGGTACGCCCAAGAAGCGGATGCACCTGCAGCGTGCGGCGCAACCGGCCGGACCCGACGCACCGACCTCGTCGGAGGCTACCACTAACGGTGCCGTTACGTCGCCGGGCACGGACACGGACAGCTGGACGGTCGATCGGTGTCTGCTGCGCTCCAAGTCCCAGGGCAACCACTACTCGGTGAACAGCTTCATGGACAGCGATGTGGACGACGATAGCGGCGGGGGCGGTAGTGGCGGGACCGGCTCGGGTACGCTCAAACCCTCCGACAAGACGCCGTTCTCGATCCACATCCGGATGGACTGTTACGACGAGCTGGAGAGCCCCTCGTCCGGTCAGGCGATCACGCCGTCGGAGGACGGTGAGCTGACCGCCGTGACGGCGACCACGCTAACGACGACGACGACGACGACGGCGACGACGCAGCCGTCCG] [+] EMBL BM631865 [CCGCCCACGCGTCCGCGATGTTTTCCCTGCCGGCCGGCAACATCACGGGATCGTTCCACGTGGAGGCCGGTACGAACGAGGACGACGACTCTACGCTGCGCCATCCGGACAACGGCATCTACGCGTCGCCCAGTCACGGCCGACAGTCGGCCAACGGTACGCCCAAGAAGCGGATGCACCTGCAGCGTGCGGCGCAACCGGCCGGACCCGACGCACCGACCTCGTCGGAGGCTACCACTAACGGTGCCGTTACGTCGCCGGGCACGGACACGGACAGCTGGACGGTCGATCGGTGTCTGCTGCGCTCCAAGTCCCAGGGCAACCACTACTCGGTGAACAGCTTCATGGACAGCGATGTGGACGACGATAGCGGCGGGGGCGGTAGTGGCGGGACCGGCTCGGGTACGCTCAAACCCTCCGACAAGACGCCGTTCTCGATCCACATCCGGATGGACTGTTACGACGAGCTGGAGAGCCCCTCGTCCGGTCAGGCGATCACGCCGTCGGAGGACGGTGAGCTGACCGCCGTGACGGCGACCACGCTAACGACGACGACGACGACGACGGCGACGACGCAGCCGTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7362#0 CCGCGGACGCGTGGGCTCGGGTACGACTGGCATCCGGAGTGTTTGCGGTGCGAGGAGTGC 60 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 GGCAAGCGCCTTAACCCGGGACAGCACGCCGAACACAAAGGTGTGCCGTACTGCCATGTG 120 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CCGTGCTACGGTGCCCTATTTGGGCCGCAGCTGTTCGGCCACGGTACCCGGGTGGAGTCG 180 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CACAAGAGCTTCGGCCAGCCGGATCAGAAAAAGCAGGCAGTGCAGCGCTCGCCAGCCGGC 240 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CCGGCCATACCCAAGGGGCACCTGGAGTCGAAGCTGAAGTCGTACAACCAGTTCCACAAC 300 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 AACAAGAGCATGGAGATACGGAGCCGCGAGGTGAACGGGCGGCTGGTGCTGGAGGGCGCC 360 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CTGCGCATCTACTGGGGGGTGCAGGGAATGATCCACCTGAAGGAGGACGACGACCAGCGC 420 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 ACCGTGGTGACGGTCCGGAAGCGTAACTCGTACCGCCAAAGCACGCCCGCCTCGCTGGCC 480 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CACGCTCACGCGACGAGCGATGGGGAGGAGGAGGGCAACGAAAAGGAAAACCACCCGAAC 540 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CATGCGGACCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCGACGGGGAGCCGGTGCGATG 600 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 GGCGTCAGCACGTCCAGCCTGACCGAGCCGTGCGACAGCAACAACGACACGACCACCATC 660 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 TCGGAGAGCATCTCGTACGACACGCTCAGCCTGTCGTCCGAGCTCAACTCGAACTTCGAC 720 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 TCGAAGCCGGTCTCGTCGAGCGAATCGTCCAAGGAGGTGTCGCCGAGCCACGCGGGCAAG 780 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 TACGTGACGCTGCCGCCGAAGCTGGACGTGAAGCAGCTCGACTGGGACGAGATCGACGAG 840 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CTGCTGCAGGTGGAGCGCAAGCTGGACGAGAGCGAGAAGCTGTACCGGACGATGCCGTCC 900 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CCGCTGGCGACCGGCGGCGGTTCGGGCGGGTCCGGCGGCGACCGCAGCCTGGCGAGCGAG 960 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 AGCGTCACCGATACGGATTACAAGACGCTCACGCCCAACACGGCCACCGGGTCGTCGGGC 1020 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 GGGTCGGGCGCCGGCTCGGGCGACAGCGACCGGACGACGACCGGCGGGCCGGACACGTCC 1080 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 ACGAGCGCGGCCACCACCAGCGCGGCGACCAACGGGGACGATGACTTTCGCACGCCGGAA 1140 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 GCGACGCTCCGGTCGCACGACTTCGAAGCGTTCAAGATGCAGATTAGCCGCGAGTTTATC 1200 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 AGCAGCACGGCGGAGATGGGCAACACGGACGGTACGCTGAAGCAGAACCAGCCGATCGAT 1260 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 CCGGCCCGGATCAACGATTCGCTCAAGCTGTACAATGACGGCGTCATGAACCGGAGCCTG 1320 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 TCGGACGAGCAGTGCCGGGAATGCGATGTTTTCCCTGCCGGCCGGCAACATCACGGGATC 1380 consensus_7362#1 --------CCGCCCACGCGTCCGCGATGTTTTCCCTGCCGGCCGGCAACATCACGGGATC 52 * ** * ************************************** consensus_7362#0 GTTCCACGTGGAGGCCGGTACGAACGAGGACGACGACTCAACGCTGCGCCATCCGGCCAA 1440 consensus_7362#1 GTTCCACGTGGAGGCCGGTACGAACGAGGACGACGACTCTACGCTGCGCCATCCGGACAA 112 *************************************** **************** *** consensus_7362#0 CGGCATCTACGCGTCGCCCAGTCACGGCCGACAGTCGGCCAACGGTACGCCCAAGAAGCG 1500 consensus_7362#1 CGGCATCTACGCGTCGCCCAGTCACGGCCGACAGTCGGCCAACGGTACGCCCAAGAAGCG 172 ************************************************************ consensus_7362#0 GATGCACCTGCAGCGTGCGGCGCAACCGGCCGGACCCGACGCACCGACCTCGTCGGAGGC 1560 consensus_7362#1 GATGCACCTGCAGCGTGCGGCGCAACCGGCCGGACCCGACGCACCGACCTCGTCGGAGGC 232 ************************************************************ consensus_7362#0 TACCACGAACGGTGCCGTTACGTCGCCGGGCACGGACACGGGACAGCTGGACGGCCGATC 1620 consensus_7362#1 TACCACTAACGGTGCCGTTACGTCGCCGGGCACGGACACGG-ACAGCTGGACGGTCGATC 291 ****** ********************************** ************ ***** consensus_7362#0 GGGGTCTGCTGCGCTCCAATGTCCCAGGGCAACCACTACTCGGGCAACAGCTTCATGGAC 1680 consensus_7362#1 GGTGTCTGCTGCGCTCCAA-GTCCCAGGGCAACCACTACTCGGTGAACAGCTTCATGGAC 350 ** **************** *********************** *************** consensus_7362#0 AGCGATGTGGACGACGATAGCGGCTGTGGGGCGGTAGTGGCGGGACCGGCTCGGGTACGC 1740 consensus_7362#1 AGCGATGTGGACGACGATAGCGGCGG--GGGCGGTAGTGGCGGGACCGGCTCGGGTACGC 408 ************************ * ******************************** consensus_7362#0 TCAAACCCTCCGACAAGCCGCCGTCCTCGATCCACATCCGGATGGACTGTTACGACGAGC 1800 consensus_7362#1 TCAAACCCTCCGACAAGACGCCGTTCTCGATCCACATCCGGATGGACTGTTACGACGAGC 468 ***************** ****** *********************************** consensus_7362#0 TGGAGAGCCCCTCGTCCGGTCAGTGCGATCACGCCGTCGCGAGGACGGTGAGCTGACCGC 1860 consensus_7362#1 TGGAGAGCCCCTCGTCCGGTCAG-GCGATCACGCCGTCG-GAGGACGGTGAGCTGACCGC 526 *********************** *************** ******************** consensus_7362#0 -GTGACGGCGAC-ACGCTAACGACGGCGACA--GACGACGGCGACGAAGCAAGCGTCCGA 1916 consensus_7362#1 CGTGACGGCGACCACGCTAACGACGACGACGACGACGACGGCGACGACGCAGCCGTCCG- 585 *********** ************ **** ************** *** ****** consensus_7362#0 GTACAGACCAGCATCAGCGGCACCGGTCACGGACGANGGGGTCGTGCTGGGAAGCCCGAA 1976 consensus_7362#1 ------------------------------------------------------------ consensus_7362#0 GAATGGCTCGACGGATCAGCGCCGTCGGCAC 2007 consensus_7362#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||