These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 935 fasta sequence [CCGGCGCCAGTAGCTCGCACGGAAATCTGCTCGTTTTCCCTCTGCTTCCAAGTACCTAGTGCAACTAATTGTTTCACATGCTGGAACAATCGTGACCGATCCAAACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA-CCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAACCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGCACGTACAAAGCGATGAGCGAAGCGGATGAGACGGAGCTGCTGTCCCGAACGAAGTATGATTTGGATATAGGCGAACACATACAGCTCAAGCAGGGGCTGCTGTTGCGCGAGTTTAACGTACTGCTCCAGCTGCTCAAACGCGTGATGGACGACCTGTCCGACAACTACGCCCAGTTTGATTTTGCGTGGCTTATGATGCGCAAATTGGATGAAATGTTAAAGGGTGCCGAACGAACGTCTACGAGCGCTTAAAGGAAGAGCAACAACGTAAGCTAATTCGCTCCCGACCATCATCATCTCTTTAATTCCACTAGCGTTTAATAAACAGTTACACACACACACACGCCCTTGACGATAAAAAAAAAAAAA] [+] EMBL BM651939 [CCGGCGCCAGTAGCTCGCACGGAAATCTGCTCGTTTTCCCTCTGCTTCCAAGTACCTAGTGCAACTAATTGTTTCACATGCTGGAACAATCGTGACCGATCCAAACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA CCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAACCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGCACGTACAAAGCGATGAGCGAAGCGGATGAGACGGAGCTGCTGTCCCGAACGAAGTATGATTTGGA ] [+] EMBL BX619593 [ TTNCCCTCTGCTTCCAAGTACCTAGTGCAACTGATTGTTTCACATGCTGGAACAATCGTGACCAATCCAAACGCTTTGATTTAGCTG TTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA CCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAGCCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGTACGTACAAAGCGATGAGCGAAGCGGATGAGANNGAGCTGCTGTCCCGAACaa ] [+] EMBL CNS08QKI [ GTTTCACATGCTGGAACAATCGTGACCGATCCAAACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAA GGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAACCCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGC ] [+] EMBL BX612357 [ AATCGTGACCGATCCAAACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA CCCGGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAACCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGCACGTACAAAGCGATGAGCGAAGCGGATGAGACGGAGCTGCTGTCCCGAACGAAGTATGATTTGGATATAGGCGAACACATACAGCTCAAGCAGGGGCTGCTGTTGCGCGAGTTTAACGTACTGCTCCAGCTGCTCAAACGCGTGATGGACGACCTGTCCGACAACTACGCCCAGTTTGATTTTGCGTGGCTTATGATGCGCAAATTGGATGAAATGTTAAAGGGTGCCGAACGAACGTC ] [+] EMBL AGA285915 [ ACGATTAGATTTAGCTGATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATCGGAGCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCCGCCAACAAGCGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGCGCCAGTTCGAGCTGCCCGATTTCGACACCATACTCACGAA CCCGGTCC ] [-] EMBL AGA284557 [ GGTCCGGTACGTGGACGGCCAGCTAGTGTCGTTCGAGCAGCAGCAGCAGCAGCGTCTGGCCGTGTTGCGCATGCAGGACAGTATTGCCAAACCGAAGGTGAAATCGATCCGAGCATCGAATTTGAAACAGATTTCCAACAGCAAGCAGGGCCTGGAGACACAGCTGATGCGCACGTACAAAGCGATGAGCGAAGCGGATGAGACGGAGCTGCTGTCCCGAACGAAGTATGATTTGGATATAGGCGAACACATACAGCTCAAGCAGGGGCTGCTGTTGCGCGAGTTTAACGTACTGCTCCAGCTGCTCAAACGCGTGATGGACGACCTGTCCGACAACTACGCCCAGTTTGATTTTGCGTGGCTTATGATGCGCAAATTGGATGAAATGTTAAAGGGTGCCGAACGAACGTCTACGAGCGCTTAAAGGAAGAGCAACAACGTAAGCTAATTCGCTCCCGACCATCATCATCTCTTTAATTCCACTAGCGTTTAATAAACAGTTACACACACACACACGCCCTTGACGATAAAAAAAAAAAAA] consensusID : consensus_7366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [GCAGAATCCCCCGCGGTTTATNAACATGCGCGTATCTGGACCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGTGCAAACCCTGCCAACAATGCTGCAAAAATCCCAACCACTGACAAAAAGCGAGCAACAGTTTGCGCTGCCAGTTCGAGCTGCCTGATTTCGACACCATACTCACGAACCCGGTCCTGGTACGTGGACTGTGCAGCTAGTGTCGTAACGAGCAGCAGCAGCACGCCAGCGTCTGGCCGTGTTGCGCATTGCCAGTGACAGTATTGNCAAACCGAAGGTGACCATCGATCCGAGCATCGAATTTTGAAACAGATTTCCAAACAGGCAAGACACGTGGCCTGNGAGACACACGCTGATGCGCACGTAACNAAAGCTGATGAGGCGAAGCGGATNGAGACTGNGNGCTTGCTTGTCCCGAACGNACGGTACTGATTNGGNTATAGNGCGAACACATTACAGCTACAAGCAGGGGCTTGCCTGTTGCGCGCAGTTTAACGTACTGGTCCAGCTTGCTCAAACTGCGGTGATAGGACGACCTGTCCGACAACTACNGACC] [+] EMBL AL694460 [GCAGAATCCCCCGCGGTTTATNAACATGCGCGTATCTGGACCTGACGGAAATTGCCCTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGACACCTACTGACTCGCTCGAAGCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGTGCAAACCCTGCCAACAATGCTGCAAAAATCCCAACCACTGACAAAAAGCGAGCAACAGTTTGCGCTGCCAGTTCGAGCTGCCTGATTTCGACACCATACTCACGAACCCGGTCCTGGTACGTGGACTGTGCAGCTAGTGTCGTAACGAGCAGCAGCAGCACGCCAGCGTCTGGCCGTGTTGCGCATTGCCAGTGACAGTATTGNCAAACCGAAGGTGACCATCGATCCGAGCATCGAATTTTGAAACAGATTTCCAAACAGGCAAGACACGTGGCCTGNGAGACACACGCTGATGCGCACGTAACNAAAGCTGATGAGGCGAAGCGGATNGAGACTGNGNGCTTGCTTGTCCCGAACGNACGGTACTGATTNGGNTATAGNGCGAACACATTACAGCTACAAGCAGGGGCTTGCCTGTTGCGCGCAGTTTAACGTACTGGTCCAGCTTGCTCAAACTGCGGTGATAGGACGACCTGTCCGACAACTACNGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7366#0 CCGGCGCCAGTAGCTCGCACGGAAATCTGCTCGTTTTCCCTCTGCTTCCAAGTACCTAGT 60 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 GCAACTAATTGTTTCACATGCTGGAACAATCGTGACCGATCCAAACGATTAGATTTAGCT 120 consensus_7366#1 ---------------------------------------------------------GCA 3 ** consensus_7366#0 GATTTTCCAGTACCCTAGTCACGATGAACATGCGCGTATC-GGAGCTGACGGAAATTGCC 179 consensus_7366#1 GAATCCCCCGCGGTTTA-------TNAACATGCGCGTATCTGGACCTGACGGAAATTGCC 56 ** * ** * ** * ************** *** *************** consensus_7366#0 CTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGGCACACCTACTGACTCGCTCGAA 239 consensus_7366#1 CTGCAGATGATGGGCTACAAGCTGTTCGATCGGAACGG-ACACCTACTGACTCGCTCGAA 115 ************************************** ********************* consensus_7366#0 GCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGGCCAAACCC-GC 298 consensus_7366#1 GCGGTAATCGAAAAGCACCAGTACGCAAACGATGACCAAATGGCACTGTGCAAACCCTGC 175 ************************************************ ******* ** consensus_7366#0 CAACAAG--CGCAAAAATCCCAACCCACCGACAAAAAGCGAGCAACAGTTTGCGC-GCCA 355 consensus_7366#1 CAACAATGCTGCAAAAATCCCAACC-ACTGACAAAAAGCGAGCAACAGTTTGCGCTGCCA 234 ****** *************** ** ************************** **** consensus_7366#0 GTTCGAGCTGCCCGATTTCGACACCATACTCACGAACCCGGTCC-GGTACGTGGACGGC- 413 consensus_7366#1 GTTCGAGCTGCCTGATTTCGACACCATACTCACGAACCCGGTCCTGGTACGTGGACTGTG 294 ************ ******************************* *********** * consensus_7366#0 CAGCTAGTGTCGTT-CGAGCAGCAGCAGCAG--CAGCGTCTGGCCGTGTTGCGCATG--C 468 consensus_7366#1 CAGCTAGTGTCGTAACGAGCAGCAGCAGCACGCCAGCGTCTGGCCGTGTTGCGCATTGCC 354 ************* *************** *********************** * consensus_7366#0 AG-GACAGTATTGCCAAACCGAAGGTGAA-ATCGATCCGAGCATCGAATTT-GAAACAGA 525 consensus_7366#1 AGTGACAGTATTGNCAAACCGAAGGTGACCATCGATCCGAGCATCGAATTTTGAAACAGA 414 ** ********** ************** ********************* ******** consensus_7366#0 TTTCCAA-----CAGCAAGCAGGGCCTGG-AGACACA-GCTGATGCGCACGTA--CAAAG 576 consensus_7366#1 TTTCCAAACAGGCAAGACACGTGGCCTGNGAGACACACGCTGATGCGCACGTAACNAAAG 474 ******* ** * * ****** ******* *************** **** consensus_7366#0 C-GATGAG-CGAAGCGGATG-AGACGGAGC---TGCT-GTCCCGAACGAA--GTA-TGAT 626 consensus_7366#1 CTGATGAGGCGAAGCGGATNGAGACTGNGNGCTTGCTTGTCCCGAACGNACGGTACTGAT 534 * ****** ********** **** * * **** ********** * *** **** consensus_7366#0 TTGGATATAGG-CGAACACAT-ACAGCT-CAAGCAGGGGCTG--CTGTTGCGCG-AGTTT 680 consensus_7366#1 TNGGNTATAGNGCGAACACATTACAGCTACAAGCAGGGGCTTGCCTGTTGCGCGCAGTTT 594 * ** ***** ********* ****** ************ ********** ***** consensus_7366#0 AACGTACTGCTCCAGCT-GCTCAAAC-GCG-TGAT-GGACGACCTGTCCGACAACTACGC 736 consensus_7366#1 AACGTACTGGTCCAGCTTGCTCAAACTGCGGTGATAGGACGACCTGTCCGACAACTACNG 654 ********* ******* ******** *** **** ********************** consensus_7366#0 CCAGTTTGATTTTGCGTGGCTTATGATGCGCAAATTGGATGAAATGTTAAAGGGTGCCGA 796 consensus_7366#1 ACC--------------------------------------------------------- 657 * consensus_7366#0 ACGAACGTCTACGAGCGCTTAAAGGAAGAGCAACAACGTAAGCTAATTCGCTCCCGACCA 856 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TCATCATCTCTTTAATTCCACTAGCGTTTAATAAACAGTTACACACACACACACGCCCTT 916 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 GACGATAAAAAAAAAAAAA 935 consensus_7366#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||