cluster # 7368

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 7368 cluster # 7368 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7368#0 length = 622 sequences # 6

consensus_7368#1 length = 617 sequences # 1

consensusID : consensus_7368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 622
fasta sequence

                              [CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]

[+] EMBL BM633163             [CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]
[+] EMBL BM644210             [      cCGCGT   AGCGCCAACAAGTCACTGTATTTCGTTACCACCCTGCAGTAAATAGTGCAAAAAAAC CCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACCTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTTTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAACAAAGGA      TCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGGTAATGAAACATGCTGC                                                                                                  ]
[+] EMBL BM626562             [                   CCGGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]
[+] EMBL BM634698             [                                   ccgCGTTACCACCCTGCAGTAAATAGTGCAAAAAAAC CCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGGCGGCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACCTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTTTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAACAAAGGA      TCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATGCTGCGAGCAACAGTACACCACCACCTTCACTCAATAAAAGCTGTGACCTGAGCTGTGTTTTTT                                       ]
[+] EMBL BM644823             [                                    ccgGTTACCGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGCCGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]
[+] EMBL BM640725             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgGGTTAATGAAACATTCTGCGAGCAACAGTACACCACCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGAAAAAACCAGTACACTATTTTAC]




>consensus_7368#0
CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATA
GTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCGCCGTTCTGGC
CGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGA
TAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCGCGC
CGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTC
GTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAA
CGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAAGGAGGGAAACTAAGCAAAGG
ATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATTTCCCAAA
CACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTCTGCGAGCAACAGTACACCA
CCACCTTCACCCAATAAAAGCTGTGACCTGAGCTGTGTTTTTTCAATGATAGCCCAATGA
AAAAACCAGTACACTATTTTAC

consensusID : consensus_7368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence

                              [TCCCCCGAGTTAGTCACTGTATTTCGTTACGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGGCCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACAGATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCAACTGATAGCCCAACTGNAAAAAAAACCAATAA]

[+] EMBL AL934751             [TCCCCCGAGTTAGTCACTGTATTTCGTTACGCCCTGCAGTAAATAGTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGGCCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTGCGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCAAAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTCCCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACAGATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCAACTGATAGCCCAACTGNAAAAAAAACCAATAA]




>consensus_7368#1
TCCCCCGAGTTAGTCACTGTATTTCGTTACGCCCTGCAGTAAATAGTGCAAAACCCCACC
TCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGGCCTGTCGCTCTTGCC
GCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAACGATAACTTGGGTGTC
GATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTGCGCCGAGACGGCCGA
GCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGGCTCGTACTCGTACAC
CGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGAGAACGGTTTCCAGCC
GGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCAAAGGATCTCTCTCTC
TCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTCCCAAACACTTCTCTG
TTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACAGATACACCACCACCT
TCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCAACTGATAGCCCAACT
GNAAAAAAAACCAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7368#0      CCGCCCACGCGTCCGAGCGCCAGCAAGTCACTGTATTTCGTTACCGCCCTGCAGTAAATA 60
consensus_7368#1      -----------TCC---CCCGAGTTAGTCACTGTATTTCGTTAC-GCCCTGCAGTAAATA 45
                                 ***   * * **  ******************* ***************

consensus_7368#0      GTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCC-GCCGTTCTGG 119
consensus_7368#1      GTGCAAAACCCCACCTCCTTCCACCATGAAATTCGCCGTCGTGTTTGCCTGCCGTTCTGG 105
                      ************************************************* **********

consensus_7368#0      CC-GTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAAC 178
consensus_7368#1      CCTGTCGCTCTTGCCGCACCCGCCGACGAGCGGGACGCTCAGGTGCTGAAGTACGAGAAC 165
                      ** *********************************************************

consensus_7368#0      GATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACC-G 237
consensus_7368#1      GATAACTTGGGTGTCGATGGATACAACTTCCAGTACGAAACCAGCAACAACATTAACCTG 225
                      ********************************************************** *

consensus_7368#0      CGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGG 297
consensus_7368#1      CGCCGAGACGGCCGAGCTGAAGAACTTCGGAGACGATGTGGCCGCCCTGGTCGTCCGCGG 285
                      ************************************************************

consensus_7368#0      CTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGA 357
consensus_7368#1      CTCGTACTCGTACACCGGCCCCGATGGACAGGTCTACACCGTGAACTACGTCGCCGACGA 345
                      ************************************************************

consensus_7368#0      GAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAA-GGAGGGAAACTAAGCA 416
consensus_7368#1      GAACGGTTTCCAGCCGGAAGCTCCCCATATCCCGCGCCTGTAACGGAGGGAAACTAAGCA 405
                      ******************************************* ****************

consensus_7368#0      AAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTAT-TTC 475
consensus_7368#1      AAGGATCTCTCTCTCTCTCTCTCTCGCTCTACTTTTCCTTCTGTCTCGCGCTCTATATTC 465
                      ******************************************************** ***

consensus_7368#0      CCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATT-CTGCGAGCA--ACA 532
consensus_7368#1      CCAAACACTTCTCTGTTATTAGCTTGTTAAGGTTAATGAAACATTACTGCGCACACAACA 525
                      ********************************************* *****  **  ***

consensus_7368#0      G-TACACCACCACCTTCACCCAATAAAAGCTGT--GACCTGAGCTGTGTTTTT----TCA 585
consensus_7368#1      GATACACCACCACCTTCACCCAATAAAACCTGCTCGACCCTGACCCTGTGTCNCACATCA 585
                      * ************************** ***   ****    *  *** *      ***

consensus_7368#0      A-TGATAGCCCAATGAAAAAACCAGTACACTATTTTAC 622
consensus_7368#1      ACTGATAGCCCAACTGNAAAAAAAACCAATAA------ 617
                      * ***********    ****  *    *  *