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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 931 fasta sequence
[CCGAAGCGCCAACGGTACGGATCGCTTTCCACACAGTTCGTTGCAAG-AATCGGTTCGTCGTTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTGGTCGTCTGTTTTAATTACAATCCCGTGCTGAA-GGGCTCCAACGGGAAATTGTGTTGCTAAAAATTGCCACAAAAAGAAAAAAAGAAAACGCAATAATGGTTTAAAAGTTTTTTGTTTGTTAAACATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCAAGAGAAGAAGAAG-AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGG-AAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGAGCATCCATGACTACAAGAAGAACAAGCAGATGGGGCTTCCCCTGGTCCTGCTACGATCCGATCG]
[+] EMBL BM632247 [CCGAAGCGCCAACGGTACGGATCGCTTTCCACACAGTTCGTTGCAAG AATCGGTTCGTCGTTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTGGTCGTCTGTTTTAATTACAATCCCGTGCTGAA GGGCTCCAACGGGAAATTGTGTTGCTAAAAATTGCCACAAAAAGAAAAAAAGAAAACGCAATAATGGTTTAAAAGTTTTTTGTTTGTTAAACATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCAAGAGAAGAAGAAG AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGGAAAGCAGCGGTGTTACTTAGGATTG ]
[+] EMBL BM643225 [ ccgGTTCGTTGCAAGAAATCGGTTCGTCGTTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTGGTGGTCGTCTGTTTTAATTGCCATCCCATGC GAACGGGCTCTAACGGGAAATTGTGTTATTAAAAATTGCCACAAAAAGAAAAAAAAGAAACGCAATAATGGTTTAAAAGTTTTTTGTTTGTTAAACATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGACCGTGTGATCGAATGTGTTTTCCAGCAATAATAATACATCCAAGCAAGCCATACTAGAGCAAGAGAAGAAGAAG AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATTGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGG ]
[+] EMBL BX623405 [ TTAACCATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCAAGAGAAGAATAAG AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGNTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCA ]
[+] EMBL BM585448 [ ccgAACATGTTTGTGAGATTCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCGAGAGAAGAAGAAG AAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGG AAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGAGCATCCATGACTACAAGAAGAACAAGCAGATGGGGCTTCCCCTGGTCCTGCTACGATCCGATCG]
[+] EMBL BM635514 [ ccgCGAACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCATTAAACGCAACAGTAGTGCAGCATCCAACCAAGCCCGTAGTGGTGCATCGGCCGTGTGATCGAATGTGTTTTCGAGCAATAGTAATACATCCAAGCAAGCCATACTAGAGCGAGAGAAGAAGAAGAAAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGG AAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATG GCATCCATGACTACAAGAAGAACAAGCAGATGGG ]
consensusID : consensus_7374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGAGAAGAAGAAGAAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGGAAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGGCATCCATGACTACAAGAAGAACAAGCAGATGGGCTTCCCCTGGTCCTGCTACGATCCGATCGACACGAAAGTCTTCAACACCGGCTGCATGCACGTG]
[+] EMBL BM591072 [CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGAGAAGAAGAAGAAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTACGCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTAGTAATCGGAGCATTCCTACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGGAAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAGTTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGGCATCCATGACTACAAGAAGAACAAGCAGATGGGCTTCCCCTGGTCCTGCTACGATCCGATCGACACGAAAGTCTTCAACACCGGCTGCATGCACGTG]
consensusID : consensus_7374#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[CCCCGAGGTNGTTCGTCGTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTGGTCGTCTGTTTTAATTGCCGTCCCGTGCGGAAGGGCTCCAACGGGAAATTGTGTTATTAAAAATTGCCACAGAAAAGAAAAAAAGGAAACGCAATAATGGTTTAAAAGTTTGTTGTTTGTAANCATGTGTGAGATTCGAACCACCGAGTACCACCGTCGTCATCAANAGCAGTAGCATTAAACGCAACAGTAGTGNAGCATCCAACAAGCCCGAGTGGTGCATCGCGCCGTGTGATCGAATGTGTNTCTCGAGCCAATAGTGATCTACATCCACAGCGAAGCCATANNAGAGCCACAGGAGAAGAAGATGAATNCAATGCGTCTTTCCGGCGCGCATCAAGTGTTTCAAGTATTTGAGTGTACGCATATGTTATTCTAATATCGATATGTGGGGGTGCATCATGCTAGTAAATCGGAGCATTCNCTACTCTGGACCCATAATCAGTACGCGCCGNTCGTCTGGGAATCAGTTCTGGGAACCG]
[+] EMBL AL931119 [CCCCGAGGTNGTTCGTCGTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTGGTCGTCTGTTTTAATTGCCGTCCCGTGCGGAAGGGCTCCAACGGGAAATTGTGTTATTAAAAATTGCCACAGAAAAGAAAAAAAGGAAACGCAATAATGGTTTAAAAGTTTGTTGTTTGTAANCATGTGTGAGATTCGAACCACCGAGTACCACCGTCGTCATCAANAGCAGTAGCATTAAACGCAACAGTAGTGNAGCATCCAACAAGCCCGAGTGGTGCATCGCGCCGTGTGATCGAATGTGTNTCTCGAGCCAATAGTGATCTACATCCACAGCGAAGCCATANNAGAGCCACAGGAGAAGAAGATGAATNCAATGCGTCTTTCCGGCGCGCATCAAGTGTTTCAAGTATTTGAGTGTACGCATATGTTATTCTAATATCGATATGTGGGGGTGCATCATGCTAGTAAATCGGAGCATTCNCTACTCTGGACCCATAATCAGTACGCGCCGNTCGTCTGGGAATCAGTTCTGGGAACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7374#0 CCGAAGCGCCAACGGTACGGATCGCTTTCCACACAGTTCGTTGCAAGAATCGGTTCGTCG 60
consensus_7374#2 ------------------------------------------CCCCGAGGTNGTTCGTCG 18
consensus_7374#1 --------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGCAAGAG 34
* * * *
consensus_7374#0 TTTTCCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTG-GTCGTCTGT-TTTAAT---- 114
consensus_7374#2 TTT-CCACGCCACTAGCGCATTGTTTTGTGTGCGTCGTG-GTCGTCTGT-TTTAAT---- 71
consensus_7374#1 AAGAAGAAGAAAAAAATGCGTCTTTCCGCGCGCATCAAGTGTTTCAAGTATTTAGTGTAC 94
* * * * ** * ** * * ** ** * ** ** **** *
consensus_7374#0 -----TACAATCCCG-TGCTGAAGGGCTCCAACGGGAAATTGTGTTGCTAAAA-ATTGCC 167
consensus_7374#2 -----TGCCGTCCCG-TGCGGAAGGGCTCCAACGGGAAATTGTGTTATTAAAA-ATTGCC 124
consensus_7374#1 GCATATGTTATTCTAATATCGATATGTGGCGGTGCACAGCTA-GTAATCGGAGCATTCCT 153
* * * * ** * * * * * ** * *** *
consensus_7374#0 ACA-AAAAGAAAAAAAGAAAACGCAATAATGGTTTAAAAG----TTTTTTGTTTGTTAAA 222
consensus_7374#2 ACAGAAAAGAAAAAAAGGAAACGCAATAATGGTTTAAAAG----TTTGTTGTTTGT-AAN 179
consensus_7374#1 ACTCTGGACCCATAAGCAGTACGCGCCGATCGTAAAGAATCAGTTCTGGGAACCGTTTGC 213
** * * ** **** ** ** * ** * * **
consensus_7374#0 CATGTTTGTGAGATTCG----AACCACCGCGTACCACCGTCGTCATCAACAGCAGTAGCA 278
consensus_7374#2 CATG--TGTGAGATTCG----AACCACCGAGTACCACCGTCGTCATCAANAGCAGTAGCA 233
consensus_7374#1 CGTGCTGATCGGGCTCGGCATAATCTCCCAAGCCCTCTGCTACCTTGGCTGGACGTC-CA 272
* ** * * *** ** * ** ** * * * * * ** **
consensus_7374#0 TTAAACGCAA-CAGTAGTGCAGCATCCAACCAAGCC-CGTAGTGGT-GCATCG-GCCGTG 334
consensus_7374#2 TTAAACGCAA-CAGTAGTGNAGCATCCAAC-AAGCC-CG-AGTGGT-GCATCGCGCCGTG 288
consensus_7374#1 CGAGCCGGAAGCAGCGGTGTTACTTAGGATTGTTCTGCGCATTTTTAGTGCTCTTCATTG 332
* ** ** *** *** * * * * ** * * * * * **
consensus_7374#0 TGATCGAATGTGTTT-TCGAGC-AATAGTAAT--ACATCCA-AGC-AAGCC-ATACTAGA 387
consensus_7374#2 TGATCGAATGTGTNTCTCGAGCCAATAGTGATCTACATCCACAGCGAAGCC-ATANNAGA 347
consensus_7374#1 TGATCTTATTCTTAG--TGAGTGGGTGGTCGGTCGCCACCAAGGCGCATCTGATCGTACC 390
***** ** * *** * ** * *** ** * * ** *
consensus_7374#0 GC---AAGAGAAGA---AGAAGAAAAAAATGCGTCTTTCCG-CGCGCATCAAGTGTTTCA 440
consensus_7374#2 GCCACAGGAGAAGA---AGATGAATNCAATGCGTCTTTCCGGCGCGCATCAAGTGTTTCA 404
consensus_7374#1 GGCCGAGGTGGCGATCGAGACGAGCTTTAC-CGAGTTTCTGGCAAAAGACAACACGAACG 449
* * * * ** *** ** * ** **** * * *** *
consensus_7374#0 AGTATTT-AGTGTACGCATATGTT---ATTCTAATATCGATATGTGGCGGTGCA------ 490
consensus_7374#2 AGTATTTGAGTGTACGCATATGTT---ATTCTAATATCGATATGTGGGGGTGCA------ 455
consensus_7374#1 ATCAGACGCACATCTGGAACCGATTGCAGCGGGATTTCCGTTGCTGCGGGTACAATGGCA 509
* * * * * * * * ** ** * ** *** **
consensus_7374#0 -CA--GCTAGTAA-TCGGAGCATTCC-TACTCTGGACCCATAAGCAGTACGCGCCGATCG 545
consensus_7374#2 -TCATGCTAGTAAATCGGAGCATTCNCTACTCTGGACCCATAATCAGTACGCGCCGNTCG 514
consensus_7374#1 TCCATGACTACAAGAAGAACAAGCAGATGGGCTTCCCCTGGTCCTGCTACGATCCGATCG 569
* ** * * * * ** ** **** *** ***
consensus_7374#0 TA-AAGAATCAGTTCTGGGAACCGTTTGCCGTGCTGATCGGGCTCGGCATAATCTCCCAA 604
consensus_7374#2 TCTGGGAATCAGTTCTGGGAACCG------------------------------------ 538
consensus_7374#1 ACACGAAA---GTCTTCAACACCGGCTGCATGCACGTG---------------------- 604
** ** * ****
consensus_7374#0 GCCCTCTGCTACCTTGGCTGGACGTCCACGAGCCGGAAGCAGCGGTGTTACTTAGGATTG 664
consensus_7374#2 ------------------------------------------------------------
consensus_7374#1 ------------------------------------------------------------
consensus_7374#0 TTCTGCGCATTTTTAGTGCTCTTCATTGTGATCTTATTCTTAGTGAGTGGGTGGTCGGTC 724
consensus_7374#2 ------------------------------------------------------------
consensus_7374#1 ------------------------------------------------------------
consensus_7374#0 GCCACCAAGGCGCATCTGATCGTACCGGCCGAGGTGGCGATCGAGACGAGCTTTACCGAG 784
consensus_7374#2 ------------------------------------------------------------
consensus_7374#1 ------------------------------------------------------------
consensus_7374#0 TTTCTGGCAAAAGACAACACGAACGATCAGACGCACATCTGGAACCGATTGCAGCGGGAT 844
consensus_7374#2 ------------------------------------------------------------
consensus_7374#1 ------------------------------------------------------------
consensus_7374#0 TTCCGTTGCTGCGGGTACAATGAGCATCCATGACTACAAGAAGAACAAGCAGATGGGGCT 904
consensus_7374#2 ------------------------------------------------------------
consensus_7374#1 ------------------------------------------------------------
consensus_7374#0 TCCCCTGGTCCTGCTACGATCCGATCG 931
consensus_7374#2 ---------------------------
consensus_7374#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||