These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1040 fasta sequence [CCGATCGGAAGCAGCGGGGCAGCGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACAC----TATATTGCGCTTTGTGCAGTGCAGAAGTTACAGCGTACCTGGAACAGAAGTTA------CCCCCCCCCTTTCAATCGATGGTGTTTGCTTAGTGTAAAGTGTGCGCAATGATTGAATGTGAGCAGCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGG-AATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGG-TCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCTTTGCGATGGCGAAGCAGCTGATCCACTACAGCACCGTGCTCGCGCTGAGCTACACCGCCAGCGTGATGACCATTGCCGGAGCCTTCCTGTTAGCTAGCAATCTTCATCTCCCGGGCAACCTACTGTACCGCGGTTCATCGACCAGTCTCGAG-------GCAGCAGCAGCAACCCGCTGTCATCACCACAGCCAACGGGGGTCGACAGTCGGCTCGATCATGCGACGGTCGATGACACAAACACACTCGAAGACTGCATCTCGAATGGCACGCTTGCCGCATCGCAGATAAAA] [+] EMBL BM622556 [CCGATCGGAAGCAGCGGGGCAGCGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACACTATATATATTGCGCTTTGTGCAGTGCAGAAGTTACAGCGTACCTGGAACAGAAGTTA CCCCCCCCCTTTCAATCGATGGTGTTTGCTTAGTGTAAAGTGTGCGCAATGATTGAATGTGAGCAGCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGCAATGCCTACGTTTCCAAGCA ] [+] EMBL BM622902 [CCGATCGGAAGCAGCGGGGCAGCGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACAC TATATTGCGCTTTGTGCAGTGCAGAAGTTACAGCGTACCTGGAACAGAAGTTACCCCCCCCCCCCCCCTTTCAATCGATGGTGTTTGCTTAGAGTAAAGTGTGCGCAATGATTGAATGTGAGCAGCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGA ] [+] EMBL BX607617 [ CCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGG AATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGG TCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCTTTGCGATGGCGAAGCAGCTGATCCACTACAGCACCGTGCTCGCGCTGAGCTACACCGCCAGCGTGATGACCATTGCCGGAGCCTTCCTGTTAGCTAGCAATCTTCATCTCCCGGGCAACCTACTGTACCGCGGTTCATCGACCAGTCTCGAG GCAGCAGCAGCAACCCGCTGTCATCACCACAGCCAACGGGGGTCGACAGTCGGCTCGATCATGCGACGGTCGATGACACAAACACACTCGAAGACTGCATCTCGAAT ] [+] EMBL CNS08FOF [ GG AATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGGATCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCTTTGCGATGGCGAA CAGCTGATCCACTACAGCACCGTGCTCGCGCTGAGCTACACCGCCAGCGTGATGACCATTGCCGGAGCCTTTCTGTTAGCTAGCAATCTTCATCTCCCGGGCAACCTACTGTACCGCGGTTCATCGACCAGTCTCGAGGGCAGCAGCAGCAGCAGCAGCCCGCTGTCGTCACCACAGCCAACGGGGGTCGACAGTCGGCTCGATCATGCGACGGTCGATGACACAAACACACTCGAAGACTGCATCTCGAATGGCACGCTTGCCGCATCGCAGATAAAA] consensusID : consensus_7377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [CCGTGTTCGCGTTTCCTCTTTGCAGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGAATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTA] [+] EMBL BX602667 [CCGTGTTCGCGTTTCCTCTTTGCAGGTGATAGATCATGAAGAGTTTCTCGATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGAATGCCTACGTTTCCAAGCACGATTTCTTCGAGAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTA] consensusID : consensus_7377#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [CCGCCCACGCGTCCGGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACACTATATTGCGCTTTGTGCAGTGCAGAAGTGACAGCGTACCTGGAACACAAGTTACCCCCCCCCCTTTCAATCGATGGGGTTTGCTTACTGTAAAGTGTGCGCAATGATTGAATGTGAGCACCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCAATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATCAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTGCGTGACGCCATGGTCGCTCATCCTGGCGATGATCTATCTTGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAA] [+] EMBL BM622536 [CCGCCCACGCGTCCGGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAAGCAACACTATATTGCGCTTTGTGCAGTGCAGAAGTGACAGCGTACCTGGAACACAAGTTACCCCCCCCCCTTTCAATCGATGGGGTTTGCTTACTGTAAAGTGTGCGCAATGATTGAATGTGAGCACCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCAATCGCATCAAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATCAGCCGCCCGCTGGCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTGCGTGACGCCATGGTCGCTCATCCTGGCGATGATCTATCTTGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAA] consensusID : consensus_7377#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [AGAATCGCCCGAGGCTACCGCGGCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGAATGCCTACGTTTCCAAGCACGATTTCTTCGAGCAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCT] [+] EMBL AL934942 [AGAATCGCCCGAGGCTACCGCGGCATTCCCTCAGTCGACTGAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCGCTCATCCTGGCGATGATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACGTCGCGTAACGCCGTCGGAATTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGACGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGGATCAGATGAAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGAATGCCTACGTTTCCAAGCACGATTTCTTCGAGCAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGCCTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7377#1 ------------------------------------------------------------ consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 CCGATCGGAAGCAGCGGGGCAGCGCGTGTTTTTCTTTTCTTCGTCGCAAGTTTATTACAA 60 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 ------------------------------------------------------------ consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 GCAACACTATATTGCGCTTTGTGCAGTGCAGAAGTTACAGCGTACCTGGAACAGAAGTTA 120 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 ------------------------------------------------------------ consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 CCCCCCCCCTTTCAATCGATGGTGTTTGCTTAGTGTAAAGTGTGCGCAATGATTGAATGT 180 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 --CCGTGTTCGCGTTTCCTCTTTGCAGGTGATAGATCATGAAGAGTTTCTCGATCGCATC 58 consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 GAGCAGCCGAACATCACCGACACCGTGGTGATAGATCATGAAGAGTTTCTCGATCGCATC 240 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 AAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTG 118 consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 AAGAAAACGCTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATTAGCCGCCCGCTG 300 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 GCCGACTACGCGGCGGACGTGTTTTCCGAAACCC-ACCGCGGCCATTCCCTCAGTCGACT 177 consensus_7377#3 -----------------AGAATCGCCCGAGGCT--ACCGCGGC-ATTCCCTCAGTCGACT 40 consensus_7377#0 GCCGACTACGCGGCGGACGTGTTTTCCGAAACCC-ACCGCGGCCATTCCCTCAGTCGACT 359 consensus_7377#2 -CCGCCCACGCGTCCGGCGTGTTTTTCTTTTCTTCGTCGCAAG-TTTATTACAAGCAACA 58 * * * * *** ** ** * ** consensus_7377#1 GAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCG---CTCATCCTGGCGAT 234 consensus_7377#3 GAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCG---CTCATCCTGGCGAT 97 consensus_7377#0 GAACTTTGCGACTGTGGGCAACCTGTCCGTGACGCCATGCTCG---CTCATCCTGGCGAT 416 consensus_7377#2 CTATATTGCG-CTTTGTGCAGTGCAGAAGTGACAGCGTACCTGGAACACAAGTTACCCCC 117 * ***** ** ** *** ***** * * * * * ** * * consensus_7377#1 GATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACG----TCGCGTAACGC 290 consensus_7377#3 GATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACG----TCGCGTAACGC 153 consensus_7377#0 GATCTATCTCGATCGGTTGAACGCCACCGATCCGACCTTTGTACG----TCGCGTAACGC 472 consensus_7377#2 C-CCCCTTTCAATCGATGGGGTTTGCTTACTGTAAAGTGTGCGCAATGATTGAATGTGAG 176 * * ** **** * * * * * ** * * * * consensus_7377#1 CGTCGGAA--TTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGA 348 consensus_7377#3 CGTCGGAA--TTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGA 211 consensus_7377#0 CGTCGGAA--TTATTTATAGTGTCGATGATGGTCTCCACTAAATTTTACTGCGGTTACGA 530 consensus_7377#2 CACCCGAACATCACCGACACCGT-GGTGATAGATCATGAAGAGTTTCTCAATCGC-ATCA 234 * * *** * * * * ** * **** * * *** * * * * consensus_7377#1 CGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGG--ATCAGATG 406 consensus_7377#3 CGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGG--ATCAGATG 269 consensus_7377#0 CGAAGACATCTATCTAAGTGCCTGGGCAGAGTATGGAAACATGACGCCGG--ATCAGATG 588 consensus_7377#2 AGAAAACG-CTGTACTACGGCTCGTCCAAGGTACGGTGCACCAAGATCAGCCGCCCGCTG 293 *** ** ** * * ** * ** *** ** * * * * * ** consensus_7377#1 AAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGA---ATGCCTACGTTT--CCA 461 consensus_7377#3 AAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGA---ATGCCTACGTTT--CCA 324 consensus_7377#0 AAAGCGTTGGAATTGGAATTCTTGGACGCAATGAATTGGA---ATGCCTACGTTT--CCA 643 consensus_7377#2 GCCGACTACGCGGCGGACGTGTTTTCCGAAACCCACCGCGGCCATTCCCTCAGTCGACTG 353 * * * *** * ** ** ** * * ** ** * * * consensus_7377#1 AGCACGATTTCTTCGAG-AAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGC 520 consensus_7377#3 AGCACGATTTCTTCGAGCAAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGC 384 consensus_7377#0 AGCACGATTTCTTCGAG-AAGCTGAAAGCGGTCGAAAAGGTGCTGGCGAAACGGCAGGGC 702 consensus_7377#2 AACTTTGCGACTGTGGGCAACCTGTGCGTGACGCCATGGTCGCT--CATCCTGGCGATGA 411 * * ** * * ** *** * * * * *** * *** * consensus_7377#1 CTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTA--------------- 565 consensus_7377#3 CTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCT-------- 436 consensus_7377#0 CTCACACGCGGCTGGCTAACGTACACCGAGCTTATCAACTTTCTACCCTCCTTTGCGATG 762 consensus_7377#2 TCTAT-CTTGATCGGTTGAACGCCACCGATCCGACC---TTTGTACGTCGCGTAA----- 462 * * * ** * * ****** * * * *** ** consensus_7377#1 ------------------------------------------------------------ consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 GCGAAGCAGCTGATCCACTACAGCACCGTGCTCGCGCTGAGCTACACCGCCAGCGTGATG 822 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 ------------------------------------------------------------ consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 ACCATTGCCGGAGCCTTCCTGTTAGCTAGCAATCTTCATCTCCCGGGCAACCTACTGTAC 882 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 ------------------------------------------------------------ consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 CGCGGTTCATCGACCAGTCTCGAGGCAGCAGCAGCAACCCGCTGTCATCACCACAGCCAA 942 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 ------------------------------------------------------------ consensus_7377#3 ------------------------------------------------------------ consensus_7377#0 CGGGGGTCGACAGTCGGCTCGATCATGCGACGGTCGATGACACAAACACACTCGAAGACT 1002 consensus_7377#2 ------------------------------------------------------------ consensus_7377#1 -------------------------------------- consensus_7377#3 -------------------------------------- consensus_7377#0 GCATCTCGAATGGCACGCTTGCCGCATCGCAGATAAAA 1040 consensus_7377#2 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||