These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 891 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTGCGAATGAGTCATGAACCCTTATCTCAATCACCTGATTTGCAGTGCAAATGTAACGACCGGTTTCATAATTTCCAATAGCGCTAGGCTCGCCGCAAGTATCAACATTGCAATAGTGGGGTTGTTGTACCTTATCGTTTTGTGTCTGCGCATGTATAAGTTTAAGCCGGAACCGGTACGACGGAACAGAGTCCAACGTATCTGCTACCGTTCTGGCTGCCTCCAGTTTCAGTGTGTGCTTACAAGTGAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAATGTAAACAATGCACTTAT-GGTGGTGATGATGGTGGGTAAAT--GGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGT-GGTGAGTTGACAGCTCCGTTCAAAGAACAATCGTAGCCGGCGAGCGCGGCGAACAGCAGAGACCGGCAAGCGTTCAGAACCCATTTCTCAGTATTTTGTCACCAAAGTGTGGCCGTCTTTTCAGTCCCGTGATCGTTCGTTGCTCTGCTTAGACGTGAAAAG] [+] EMBL BM575303 [CCGCGGACGCGTGGGCGGACGCGTGGGTGCGAATGAGTCATGAACCCTTATCTCAATCACCTGATTTGCAGTGCAAATGTAACGACCGGTTTCATAATTTCCAATAGCGCTAGGCTCGCCGCAAGTATCAACATTGCAATAGTGGGGTTGTTGTACCTTATCGTTTTGTGTCTGCGCATGTATAAGTTTAAGCCGGAACCGGTACGACGGAACAGAGTCCAACGTATCTGCTACCGTTCTGGCTGCCTCCAGTTTCAGTGTGTGCTTACAAGCGTATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACAGCTCGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGCTTCCACTGCCGCAGGGAGGGCCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTG ] [+] EMBL BX604649 [ AAGTTTAAGCCGGAACCGGTACGACGGAATAGAGTCTAACGTTTCTGCTACCGTTCTGGCTGCCTCCAGTTTCAGTGTGTACTTACAAGTGAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAATGTAAACAATGCACTTAT GGTGGTGATGATGGTGGGTAAAT GGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGT GGTGAGTTGACAGCTCCGTTCAAAGAACAATCGTAGCCGGCGAGCGCGGCGAACAGCAGAGAC ] [+] EMBL BM592175 [ ccGCTTACAAGTGAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAATGTAAACAATGCACTTATGGGTGGTGATGATGGTGGGTAAATGGGGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGTGGGTGAGTTGACAGCTCCGTTCAAAGAACAATCGTAGCCGGCGAGCGCGGCGAACAGCAGAGACCGGCAAGCGTTCAGAACCCATTTCTCAGTATTTTGTCACCAAAGTGTGGCCGTCTTTTCAGTCCCGTGATCGTTCGTTGCTCTGCTTAGACGTGAAAAG] [+] EMBL CNS09LRC [ TGAATAGTCGATGCACGATGGGTAA CTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGAGGCTGTACTGCGTGTGGCGAAG GGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGTA GGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGATAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCA GGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAATGTAAACAATGCACTTAT GGTGGTGATGATGGTGGGTAAAT GGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGT ] [+] EMBL BX623057 [ ATTCGGTCGATCGTTGCCNATACGCNAAACGATTGTGTTTCCACTGCCGTANGGAGGGTCACATCNTTCGGATGTGCCCGGNTCGGTTGAGACAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGACCCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAAATTAAACAATGCACTTAT GGTGGTGATGATGGTGGGTAAAT GGTGTGGCAGGGACCTGTTGAGTGAAAAGAGCATGNTGTGTGTGTGTGTGTGGT GGTGAGTTGACAGCTCCGNTCAAANAACAATCGTAGCCG ] consensusID : consensus_7378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [GAATCGCCCGAGTTTAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGGAGGCTGTACTAGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGCTAGCGGAGGGTCACATCGCTTCGGATGTGCCCGGCTTCGGTTGANGAGAAAATCAACACAAACAGCAACACTAGGCGCACCTTAACACGCGTCTTGGCAATTGTTTCGACTCTAACTATAAACACATTTTGCGANNCCCCTACCCGGCAGGGCATGTCGGTCTGTATCTCGATATTCGGAACGTGTACGTGAATGTAATACAATGCACTTTATGGTGGTGATGATAGGTGGGTAAATAGGTGTGGCAGGGACCTGTTGAGTGAGAAAGCGCCATGGTGTGTGTGTGTGTGTGGTGGTGAGTNTGACAGGCGTCCGCCNCGAAAGGAACAAATACGTAACGGCGCANGCGCGGGGAAGCGAGCAAGAGAGNCGGNAAGCGG] [+] EMBL AL934912 [GAATCGCCCGAGTTTAATAGTCGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGGGGAGGCTGTACTAGCGTGTGGCGAAGCGGACCATTCGGTCGATCGTTGCCGATACGCGAAACGATTGTGTTTCCACTGCCGCTAGCGGAGGGTCACATCGCTTCGGATGTGCCCGGCTTCGGTTGANGAGAAAATCAACACAAACAGCAACACTAGGCGCACCTTAACACGCGTCTTGGCAATTGTTTCGACTCTAACTATAAACACATTTTGCGANNCCCCTACCCGGCAGGGCATGTCGGTCTGTATCTCGATATTCGGAACGTGTACGTGAATGTAATACAATGCACTTTATGGTGGTGATGATAGGTGGGTAAATAGGTGTGGCAGGGACCTGTTGAGTGAGAAAGCGCCATGGTGTGTGTGTGTGTGTGGTGGTGAGTNTGACAGGCGTCCGCCNCGAAAGGAACAAATACGTAACGGCGCANGCGCGGGGAAGCGAGCAAGAGAGNCGGNAAGCGG] consensusID : consensus_7378#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [TCGCCNCGAGGNGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGTGAGGCTGTACTGCGTGTGGCGAAGCTGTGACCATTCGGTCGATCTGTTGCCTGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGAACCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAAAGTAAACAATGCACTTATGGTGGTGATGATGGTGGGTAAATGGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGTGGTGAGTTGACAGCT] [+] EMBL AL931152 [TCGCCNCGAGGNGATGCACGATGGGTAACCTTTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGCGCTCTACCGCACCCAGTGAGGCTGTACTGCGTGTGGCGAAGCTGTGACCATTCGGTCGATCTGTTGCCTGATACGCGAAACGATTGTGTTTCCACTGCCGTAGGGAGGGTCACATCGTTCGGATGTGCCCGGTTCGGTTGAGAGAAAATCAACACAAAAGCAACACTAGGCGCAATTAAAGCGTCTTGGCAATTGTTTCGATTAATATAAACACATTTTGCGAACCCCTACCCGGCAGGGATGCGGTCTGTATCTCGATTTCGGAACGTGTACGTGAAAGTAAACAATGCACTTATGGTGGTGATGATGGTGGGTAAATGGTGTGGCAGGGACCTGTTGAGTGAAAAGCGCATGGTGTGTGTGTGTGTGTGGTGGTGAGTTGACAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7378#0 CCGCGGACGCGTGGGCGGACGCGTGGGTGCGAATGAGTCATGAACCCTTATCTCAATCAC 60 consensus_7378#2 ------------------------------------------------------------ consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 CTGATTTGCAGTGCAAATGTAACGACCGGTTTCATAATTTCCAATAGCGCTAGGCTCGCC 120 consensus_7378#2 ------------------------------------------------------------ consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 GCAAGTATCAACATTGCAATAGTGGGGTTGTTGTACCTTATCGTTTTGTGTCTGCGCATG 180 consensus_7378#2 ------------------------------------------------------------ consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 TATAAGTTTAAGCCGGAACCGGTACGACGGAACAGAGTCCAACGTATCTGCTACCGTTCT 240 consensus_7378#2 ------------------------------------------------------------ consensus_7378#1 ------------------------------------------------------------ consensus_7378#0 GGCTGCCTCCAGTTTCAGTGTGTGCTTACAAGTGAATAGTCGATGCACGATGGGTAACCT 300 consensus_7378#2 -----------------------------TCGCCNCGAGGNGATGCACGATGGGTAACCT 31 consensus_7378#1 -------------------GAATCGCCCGAGTTTAATAGTCGATGCACGATGGGTAACCT 41 ** ******************* consensus_7378#0 TTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGC 360 consensus_7378#2 TTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGC 91 consensus_7378#1 TTTTTCCAGCAGCAATTCGAGCCGGCCGCGCACGGCTAGTGGCCCACCAAAGCCTCATGC 101 ************************************************************ consensus_7378#0 GCTCTACCGCACCCAGGG-AGGCTGTACT-GCGTGTGGCGAAGCGG--ACCATTCGGTCG 416 consensus_7378#2 GCTCTACCGCACCCAGTG-AGGCTGTACT-GCGTGTGGCGAAGCTGTGACCATTCGGTCG 149 consensus_7378#1 GCTCTACCGCACCCAGGGGAGGCTGTACTAGCGTGTGGCGAAGCGG--ACCATTCGGTCG 159 **************** * ********** ************** * ************ consensus_7378#0 ATC-GTTGCC-GATACGCGAAACGATTGTGTTTCCACTGCCG-TAG-GGAGGGTCACATC 472 consensus_7378#2 ATCTGTTGCCTGATACGCGAAACGATTGTGTTTCCACTGCCG-TAG-GGAGGGTCACATC 207 consensus_7378#1 ATC-GTTGCC-GATACGCGAAACGATTGTGTTTCCACTGCCGCTAGCGGAGGGTCACATC 217 *** ****** ******************************* *** ************* consensus_7378#0 G-TTCGGATGTGCCCGG-TTCGGTTGAG-AGAAAATCAACACAAA-AGCAACACTAGGCG 528 consensus_7378#2 G-TTCGGATGTGCCCGG-TTCGGTTGAG-AGAAAATCAACACAAA-AGCAACACTAGGCG 263 consensus_7378#1 GCTTCGGATGTGCCCGGCTTCGGTTGANGAGAAAATCAACACAAACAGCAACACTAGGCG 277 * *************** ********* **************** ************** consensus_7378#0 CAATTAAA---GCGTCTTGGCAATTGTTTCGATT---AATATAAACACATTTTGCGACCC 582 consensus_7378#2 CAATTAAA---GCGTCTTGGCAATTGTTTCGATT---AATATAAACACATTTTGCGAACC 317 consensus_7378#1 CACCTTAACACGCGTCTTGGCAATTGTTTCGACTCTAACTATAAACACATTTTGCGANNC 337 ** * ** ********************* * * ****************** * consensus_7378#0 CC-TACCCGGCAGGG-ATG-CGGTCTGTATCTCGAT-TTCGGAACGTGTACGTGAATGTA 638 consensus_7378#2 CC-TACCCGGCAGGG-ATG-CGGTCTGTATCTCGAT-TTCGGAACGTGTACGTGAAAGTA 373 consensus_7378#1 CCCTACCCGGCAGGGCATGTCGGTCTGTATCTCGATATTCGGAACGTGTACGTGAATGTA 397 ** ************ *** **************** ******************* *** consensus_7378#0 A-ACAATGCACTT-ATGGTGGTGATGAT-GGTGGGTAAAT-GGTGTGGCAGGGACCTGTT 694 consensus_7378#2 A-ACAATGCACTT-ATGGTGGTGATGAT-GGTGGGTAAAT-GGTGTGGCAGGGACCTGTT 429 consensus_7378#1 ATACAATGCACTTTATGGTGGTGATGATAGGTGGGTAAATAGGTGTGGCAGGGACCTGTT 457 * *********** ************** *********** ******************* consensus_7378#0 GAGTGA-AAAGCGC-ATGGTGTGTGTGTGTGTGTGGTGGTGAGTT-GACAG-----CTCC 746 consensus_7378#2 GAGTGA-AAAGCGC-ATGGTGTGTGTGTGTGTGTGGTGGTGAGTT-GACAG-----CT-- 479 consensus_7378#1 GAGTGAGAAAGCGCCATGGTGTGTGTGTGTGTGTGGTGGTGAGTNTGACAGGCGTCCGCC 517 ****** ******* ***************************** ***** * consensus_7378#0 GTTCAAAGAACAAT--CGTAGCCG-GCGAGCGCGGCGAAC--AGCA-GAGA-CCGGCAAG 799 consensus_7378#2 ------------------------------------------------------------ consensus_7378#1 NCGAAAGGAACAAATACGTAACGGCGCANGCGCGGGGAAGCGAGCAAGAGAGNCGGNAAG 577 consensus_7378#0 CGTTCAGAACCCATTTCTCAGTATTTTGTCACCAAAGTGTGGCCGTCTTTTCAGTCCCGT 859 consensus_7378#2 ------------------------------------------------------------ consensus_7378#1 CGG--------------------------------------------------------- 580 consensus_7378#0 GATCGTTCGTTGCTCTGCTTAGACGTGAAAAG 891 consensus_7378#2 -------------------------------- consensus_7378#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||