These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1453 fasta sequence [CACATGCCTGCTCTTTTTTTTATTTTTTTTGACATTTTCATTCCTTAAGGTATTTTAAAACATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCTTTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCTCAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAATGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTCCCTCTCCATCTAGCGCGTTAAGAACTTTACAATA-TTTACGGCTGTACTGTAATGTAGCAACGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAACGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCACAATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTTCCCACCACAATGGCGGCGGAGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGTATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACCGTTCCGGCTGGCCGGTGGTGGCGTTCGGCGGCTAAAGATCGCCTCGTAGCTGCTGCTGCTGGCCCGGCTGCTTTCCGTGACGCTGCGCCGCATCAGCGGCGGTATCGGCGGCATCGGTTCCCGCCTCATGGGGGGAAAATCACGTCCCCGGATGCCGTACCGGCGTTCGAACAGGTCGCGCGGATCCTCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATCGGAGGCACGTGAATGTAATTTACACCTGAAAAAGGGGCCCACAAATTTAAGCCCTTTTCCGAGATCGGCTTTTCCGG] [+] EMBL BX466888 [CACATGCCTGCTCTTTTTTTTATTTTTTTTGACATTTTCATTCCTTAAGGTATTTTAAAACATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCTTTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCTCAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAATGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTCCCTCTCCATCTAGCGCGTTAAGAACTTTACAATATTTTACGGCTGTACTGTAATGTA CAACGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAACGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTC ] [+] EMBL CNS08VXN [ ATTTTAAAACATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCTTTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCTCAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAATGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTCCCTCTCCATCTAGCGCGTTAAGAACTTTACAATA TTTACGGCTGTACTGTAATGTAGCAACGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAACGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCACAATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTTCCCACCACAATGGCGGCGGAGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGTATCGATGGGT ] [+] EMBL CNS08WXH [ CATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCTTTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCTCAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAATGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTCCCTCTTCATCTAGCGCGTTAAGAACTTTACAATA TTTACGGCTGTACTGTAATGTAGCAACGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAGCGCTGATGATTTAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATAAAAAAAACTCGGTAAACCCGGGGACTATAGCTGCAATAGTGTACCATCCCCCCCTCTCTTTACAGTTTACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCACAATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTTCAATACACAAACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTTCCCACCACAAT ] [-] EMBL CNS08VXM [ ATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCACAATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTTCCCACCACAATGGCGGCGGAGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGTATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTA ] [-] EMBL BM590129 [ GACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACCGTTCCGGCTGGCCGGTGGTGGCGTTCGGCGGCTAAAGATCGCCTCGTAGCTGCTGCTGCTGGCCCGGCTGCTTTCCGTGACGCTGCGCCGCATCAGCGGCGGTATCGGCGGCATCGGTTCCCGCCTCATGGGGGGAAAATCACGTCCCCGGATGCCGTACCGGCGTTCGAACAGGTCGCGCGGATCCTCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATCGGAGGCACGTGAATGTAATTTACACCTGAAAAAGGGGCCCACAAATTTAAGCCCTTTTCCGAGATCGGCTTTTCCGG] [+] EMBL CNS09JIR [ AACATCGCCTCGTAGCTGCTGCTGCTGGCCCGGCTGCTTTCCGTGACGCTGCGCCGCATCAGCGGGGGTATCGGCGGCATCGGTTC ] consensusID : consensus_7379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 950 fasta sequence [AGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAGCGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCAAAATCAAGCTTTACGTCCCCCTTGGCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAATTTTTTTGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTAAACACCACAATGGCGGCGGGGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGCATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACGTTCCGGCTGGCGGCATCGGTTCCCGCCTCATGGGGGGAAAATCACGTCCCCGGATGCGTACCGGCGTTCGAACAGGTCGCGCGGATCCTCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATTGGAGGCACGTGAATGTAATTTACACGTGAAAAAGGGCCCACAATTTTAAGCCCTTTTCCG] [-] EMBL CNS08WXG [AGAAAAAGCACAAAGAAAAAAGTCCGAATGAGGATGAGTAGCGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAAACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATTGCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTGCAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTTGTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCAGCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCAAAATCAAGCTTTACGTCCCCCTTGGCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAAATTTTTTTGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCACTAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTATCCCCCGTTTAAACACCACAATGGCGGCGGGGTGGTCCGCCGCCCTAATTCCATCCGTCTCAGTACGGTGCGCATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAACGAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACGTTCCGGCTGGCGGCATCGGTTCCCGCCTCATGGGGGGAAAATCACGTCCCCGGATGCGTACCGGCGTTCGAACAGGTCGCGCGGATCCTCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATTGGAGGCACGTGAATGTAATTTACACGTGAAAAAGGGCCCACAATTTTAAGCCCTTTTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7379#0 CACATGCCTGCTCTTTTTTTTATTTTTTTTGACATTTTCATTCCTTAAGGTATTTTAAAA 60 consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 CATTTCGTTTTATTATATCTTTCAGTAGTAGCTTACGAATAGTTATTACAAGTTATAGCT 120 consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 TTCAGTTGTAGCCCGTTTCTCTGCACTCTGTTCGTGATCTCCTTGCTCATCTTTCGGTCT 180 consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 CAGCACGAGACTGCTGACCTTGTAAATCCTCCGCAAGGACGTCAAGATTTCAATGTCAAA 240 consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 TGATCGTATGAACACATAAAAAAAGGAATCATATCCCGCCCCTTGTTAATCCTCTCTCTC 300 consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 CCTCTCCATCTAGCGCGTTAAGAACTTTACAATATTTACGGCTGTACTGTAATGTAGCAA 360 consensus_7379#1 ------------------------------------------------------------ consensus_7379#0 CGGTTAAACATATAAAAGCGACAAAACAGAAAAAGCACAAAGAAAAAAGTCCGAATGAGG 420 consensus_7379#1 ---------------------------AGAAAAAGCACAAAGAAAAAAGTCCGAATGAGG 33 ********************************* consensus_7379#0 ATGAGTAACGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAA 480 consensus_7379#1 ATGAGTAGCGCTGATGAAATAGTTTATACGAGCTATTGGGTGAAAATACTCGACAACTAA 93 ******* **************************************************** consensus_7379#0 ACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATT 540 consensus_7379#1 ACTAAACTAAAATATGGATGAAGAAATGTTTTGCAGAGGAAATGCACTGTCGCCACGATT 153 ************************************************************ consensus_7379#0 GCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTG 600 consensus_7379#1 GCTGAGAATTTGTTATTCCTTTCTATGACGTTTTCTCGGTAAACCCGGGCACTATAGCTG 213 ************************************************************ consensus_7379#0 CAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTT 660 consensus_7379#1 CAATAGTGTACCATCACCCCCTCTCTTTACAGATAACAACGGATAATTGTAATATGCCTT 273 ************************************************************ consensus_7379#0 GTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCA 720 consensus_7379#1 GTTTTCCTCTCTGTTCTCTTCGTTTTACAGTTTCTAAACAGCTGTAAGTACAACCTTGCA 333 ************************************************************ consensus_7379#0 GCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCAC 780 consensus_7379#1 GCATCATTGCGTCCAACCAGAGCATGGTATAGGGGCCGCCACGTGTGGCACTGGCTCCAA 393 *********************************************************** consensus_7379#0 AATCAATCTTTACGTCCCCCTTTTCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAA 840 consensus_7379#1 AATCAAGCTTTACGTCCCCCTTGGCCATCCCTTTTGCAGTAGAGTGTGTGCAATACACAA 453 ****** *************** ************************************ consensus_7379#0 ACATTTGAGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCAC 900 consensus_7379#1 ATTTTTTTGTGTGTTTTGTTGCAGTTGTTGCGCGATTTTACACGAATATCCCTCCCCCAC 513 * *** **************************************************** consensus_7379#0 TAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTA 960 consensus_7379#1 TAAATTCCATCGGCTGTGAGCAACATTCGATTCCATGTCCATCGAATTTGTCAGAAATTA 573 ************************************************************ consensus_7379#0 TCCCCCGTTTTCCCACCACAATGGCGGCGGAGTGGTCCGCCGCCCTAATTCCATCCGTCT 1020 consensus_7379#1 TCCCCCGTTTAAACACCACAATGGCGGCGGGGTGGTCCGCCGCCCTAATTCCATCCGTCT 633 ********** ***************** ***************************** consensus_7379#0 CAGTACGGTGCGTATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAAC 1080 consensus_7379#1 CAGTACGGTGCGCATCGATGGGTGGGCGACGGTCCGCGCAGCCCACGCCGATCGTCGAAC 693 ************ *********************************************** consensus_7379#0 GAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTACCGTTCCGG 1140 consensus_7379#1 GAGTCGCGGCTAAAGTCTTCGTACACGCCGAACCGGCTGATGCTGCTCGTAC-GTTCCGG 752 **************************************************** ******* consensus_7379#0 CTGGCCGGTGGTGGCGTTCGGCGGCTAAAGATCGCCTCGTAGCTGCTGCTGCTGGCCCGG 1200 consensus_7379#1 CTGGC------------------------------------------------------- 757 ***** consensus_7379#0 CTGCTTTCCGTGACGCTGCGCCGCATCAGCGGCGGTATCGGCGGCATCGGTTCCCGCCTC 1260 consensus_7379#1 ------------------------------------------GGCATCGGTTCCCGCCTC 775 ****************** consensus_7379#0 ATGGGGGGAAAATCACGTCCCCGGATGCCGTACCGGCGTTCGAACAGGTCGCGCGGATCC 1320 consensus_7379#1 ATGGGGGGAAAATCACGTCCCCGGATGC-GTACCGGCGTTCGAACAGGTCGCGCGGATCC 834 **************************** ******************************* consensus_7379#0 TCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATCGGAG 1380 consensus_7379#1 TCATACCGGTCGTAGTAGTCAAAGGTGTCCTTGCCGTACCAGCCGGGCGACAAATTGGAG 894 ******************************************************* **** consensus_7379#0 GCACGTGAATGTAATTTACACCTGAAAAAGGGGCCCACAAATTTAAGCCCTTTTCCGAGA 1440 consensus_7379#1 GCACGTGAATGTAATTTACACGTGAAAAAGGG-CCCACAATTTTAAGCCCTTTTCCG--- 950 ********************* ********** ******* **************** consensus_7379#0 TCGGCTTTTCCGG 1453 consensus_7379#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||