These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1612 fasta sequence [CCATGCCACCGCCGTCGTCCAATCCGACGAATCCGTTCACTGGCGCCGCCACCGAGAGCACGGGGCTGAACACGGGCAATCAACCAATCTACACGCCAGGCCACTAAAATGCATCTCGATTTGGAATTCGATAACCAGCTTCTGCTATTACAAAAACGTTACACACAAAAAAGCAAAACAAAAACAAAACAAAAAACAATAAGAATATGGTATGAAGTGAGCGTATTATTCGTCGCCATCAATAACACGATACGGTTCGAAGGGAGGGAACCCGGTTACATGGACGCAAGGGATAAGGGCGCGATAAGGCACAAGTTGAGTCATGCAAAGCGGCGCCGCGCCCCTCCATTTATCGCGCATCCCTCTTACTTGTGCAGCGAATAGCACCCGAACCCGAAATCAAACACTCCCCATAACAATATGCTGTCACAATAATAAGCAACTGTAATAATAATCGTCGCTAGAACCAGGACCGCGAGCATCTCTTCCCTGCCTGCCTGGCTGCCTGCAAACAAAACACGGTGGTTGGTGGAAGGCATCCGTACATAAGCAACGGGCAGCAGAGGAGCGAAGAAACAAAACTATCTTTTTAGGGTATATTTATACGTTTAAGTAATGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCTTTTCGGTGACACGCGCTCAAGTCGTCAAACAGGCAAAAGCTGAGATGTTGAAACATAACACACACACTAACAGAGAGCCACAATCACACACACCATTAACGTTATCGCACTCATTTGGAAGAGTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGCAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAGAAATACGGAGCCGAACGTGCACACACACACAGGGGGACGGTGCACCACGCGGAGACAGTGACGGAACAGTTCATTATTATAATCCGGTGTCACATCCCGTAGGACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAATTAATTGCGCAAGTTATGTTGTGTGAGTGTGTG-TGTGTGTATCTAGGGGTACAACGTGCATGCCCTCCTCTCCTGCATATGCCACAACACTGTGCAGATAGTTATTGTACTGTACGAACGACCGTAGAACGAGATGATGTATGATGATGATGAAGACAAAGAGTAAAAGATGCA] [+] EMBL BX607225 [CCATGCCACCGCCGTCGTCCAATCCGACGAATCCGTTCACTGGCGCCGCCACCGAGAGCACGGGGCTGAACACGGGCAATCAACCAATCTACACGCCAGGCCACTAAAATGCATCTCGATTTGGAATTCGATAACCAGCTTCTGCTATTACAAAAACGTTACACACAAAAAAGCAAAACAAAAACAAAACAAAAAACAATAAGAATATGGTATGAAGTGAGCGTATTATTCGTCGCCATCAATAACACGATACGGTTCGAAGGGAGGGAACCCGGTTACATGGACGCAAGGGATAAGGGCGCGATAAGGCACAAGTTGAGTCATGCAAAGCGGCGCCGCGCCCCTCCATTTATCGCGCATCCCTCTTACTTGTGCAGCGAATAGCACCCGAACCCGAAATCAAACACTCCCCATAACAATATGCTGTCACAATAATAAGCAACTGTAATAATAATCGTCGCTAGAACCAGGACCGCGAGCATCTCTTCCCTGCCTGCCTGGCTGCCTGCAAACAAAACACGGTGGTTGGTGGAAGGCATCCGTACATAAGCAACGGGCAGCAGAGGAGCGAAGAAACAAAAC ] [+] EMBL BX624693 [ GCGTATTATTCGTCGCCATCAATAACACGATACGGTTCGAAGGGAGGGAACCCGGTTACATGGACGCAAGGGATAAGGGCGCGATAAGGCACAAGTTGAGTCATGCAAAGCGGCGCCGCGCCCCTCCATTTATCGCGCATCCCTCTTACTTGTGCAGCGAATAGCACCCGAACCCGAAATCAAACACTCCCCATAACAATATGCTGTCACAATAATAAGCAACTGTAATAATAATCGTCGCTAGAACCAGGACCGCGAGCATCTCTTCCCTGCCTGCCTGGCTGCCTGCAAACAAAACACGGTGGTTGGTGGAAGGCATCCGTACATAAGCAAGGGGCAGCAGAGGAGCGAAGAAACAAAAGTATCTTTTTAGGGTATATTTATACGTTTAAGTAATGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATG TGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAGAAGAGTGGCGAAAAGCAGCAGTAGAA AGGAAG ACCAAATC AAACCATTTAAGAAGCTAACAATAATACTTT ] [+] EMBL CNS08MAI [ TGGCAAATAACAACAGTTAGTAGAAG CCCCTTTTCTGTGTGCATATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCTTTTCGGTGACACGCGCTCAAGTCGTCAAACAGGCAAAAGCTGAGATGTTGAAACATAACACACACACTAACAGAGAGCCACAATCACACACACCATTAACGTTATCGCACTCATTTGGAAGAGTCCATAAATTAGCGAATGTATTTTCTGGTTCAAA ] [+] EMBL CNS08YGL [ AATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAAAAAAAACCTTTTCGGTGACACGCGCTCAAGTCGTCAAACAGGCAACAGCTGAGATGTTGAAACATAACACACACACTAACAGAGAGCCACAATCACACACACCATTAACGTTATCGCACTCATATGGAAGAGTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGCAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAGAAATACGGAGCCGAACGTGCACACACACACAGGGGGACGGTGCACCACGCGGAGACAGTTACGGAACAGTTCATTATTATAATCCGGTGTCACATCCCGTA GACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAATTAATTGCGCAAGTCATGTTGTGTGAGTGTGTG TGTGTGTATCTAGGGGTACAACGTGCATGCCCTCCTCTCCTGCATATGCCACAACACTGTGCAGATAGTTATTGTACTGTACGAACGACCGTAGAACGAGATGATGTATGATGATGATGAAGACAAAG ] [-] EMBL CNS08YGM [ CCTTTTCTGTGTGCATATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCTTTTCGGTGAAACGCGCTCAAGTCGTCAAACAGGCAAAAGCTGAGATGTTGAAACATAAAAAACACACTAACAGAGAGCCACAATTACACACACCATTAACGTTATCGCACTCATTTGGAAGAGTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGAAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAGAAATACGGAGCCGAACGTGGACACACACACAGGGGGACGGTGCACCACGCGGAGACAGTGATTTTTTATTTTATTATTATAATCCGGTGTCACATCCCGTAGGACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAATTAATTGCGCAAGTTATGTTGTGTGAGTGTGTG TGTGTGTATCTAGGGGTACAACGTGCATGCCCTCCTCTCCTGCATATGCCACACCACTGTGCAGATAGTTATTGTACTGTACGAACGACCGTAGGACGAGATGATGTATGATGATGATGAAGACAAAGAGTAAAAGATGCA] [-] EMBL CNS08MAJ [ GGGACGGTGCACCACGCGGAGACAGTGACGGAACAGTTCATTATTATAATCCGATGTCACATCCCGTAGGACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAATTAATTGCGCAAGTTATGTTGTGTGAGTGTGTGATATGTGTATCTAag ] consensusID : consensus_7383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATGTGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAGAAGAGTGGCGAAAAGCAGCAGTAGAAAAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCATTTCGGTGACACGCGCTCAAGTAAAACAGTAAACATTAACAGAGAGCCACAATCACACACAGCATTAACGTTATCGCAACTCATTTGGAAGACTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGAAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAG] [+] EMBL BM590122 [CCGGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCATATATGTGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTGGATGCCTCAGAGGAAGAGGAGACAGAAGAGTGGCGAAAAGCAGCAGTAGAAAAGGAAGAACAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGCTAGTATCCGTATGCTCTACATACTACTAAATCCCATCCATTTCGGTGACACGCGCTCAAGTAAAACAGTAAACATTAACAGAGAGCCACAATCACACACAGCATTAACGTTATCGCAACTCATTTGGAAGACTCCATAAATTAGCGAATGTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCGTAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGAAACGTGTTTCCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGTGTGAAACCCGTTATGCATATTACGATACTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7383#0 CCATGCCACCGCCGTCGTCCAATCCGACGAATCCGTTCACTGGCGCCGCCACCGAGAGCA 60 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 CGGGGCTGAACACGGGCAATCAACCAATCTACACGCCAGGCCACTAAAATGCATCTCGAT 120 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 TTGGAATTCGATAACCAGCTTCTGCTATTACAAAAACGTTACACACAAAAAAGCAAAACA 180 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 AAAACAAAACAAAAAACAATAAGAATATGGTATGAAGTGAGCGTATTATTCGTCGCCATC 240 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 AATAACACGATACGGTTCGAAGGGAGGGAACCCGGTTACATGGACGCAAGGGATAAGGGC 300 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 GCGATAAGGCACAAGTTGAGTCATGCAAAGCGGCGCCGCGCCCCTCCATTTATCGCGCAT 360 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 CCCTCTTACTTGTGCAGCGAATAGCACCCGAACCCGAAATCAAACACTCCCCATAACAAT 420 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 ATGCTGTCACAATAATAAGCAACTGTAATAATAATCGTCGCTAGAACCAGGACCGCGAGC 480 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 ATCTCTTCCCTGCCTGCCTGGCTGCCTGCAAACAAAACACGGTGGTTGGTGGAAGGCATC 540 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 CGTACATAAGCAACGGGCAGCAGAGGAGCGAAGAAACAAAACTATCTTTTTAGGGTATAT 600 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 TTATACGTTTAAGTAATGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCA 660 consensus_7383#1 --------------CCGGGCAAATAACAACAGTTAGTAGAAGCCCCCTTTTCTGTGTGCA 46 ******************************************* consensus_7383#0 TATATGTATGTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTG 720 consensus_7383#1 TATATGT--GTGTGCGTGTGTGTGTACGTGTATTTATCCTAGTGAGGCTACTTCCCACTG 104 ******* *************************************************** consensus_7383#0 GATGCCTCAGAGGAAGAGGAGACAAGGGAGTGGCGAAAAGCAGCAGTAGAAGAGGAAGAA 780 consensus_7383#1 GATGCCTCAGAGGAAGAGGAGACAGAAGAGTGGCGAAAAGCAGCAGTAGAAAAGGAAGAA 164 ************************ ************************ ******** consensus_7383#0 CAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGC 840 consensus_7383#1 CAAAATCAAAACAATTTAAGAAGCTAACAATAATACTTTTATCTTGCTGTGTGTTGCCGC 224 ************************************************************ consensus_7383#0 TAGTATCCGTATGCTCTACATACTACTAAATCCCATCCTTTTCGGTGACACGCGCTCAAG 900 consensus_7383#1 TAGTATCCGTATGCTCTACATACTACTAAATCCCATCCATTTCGGTGACACGCGCTCAAG 284 ************************************** ********************* consensus_7383#0 TCGTCAAACAGGCAAAAGCTGAGATGTTGAAACATAACACACACACTAACAGAGAGCCAC 960 consensus_7383#1 TA---AAACAG----------------------------TAAACATTAACAGAGAGCCAC 313 * ****** * *** ************** consensus_7383#0 AATCACACACACCATTAACGTTATCGCA-CTCATTTGGAAGAGTCCATAAATTAGCGAAT 1019 consensus_7383#1 AATCACACACAGCATTAACGTTATCGCAACTCATTTGGAAGACTCCATAAATTAGCGAAT 373 *********** **************** ************* ***************** consensus_7383#0 GTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCG 1079 consensus_7383#1 GTATTTTCTGGTTCAAAACGGCGATTTCGATTATTCACTACCATCATCCCCACGCGAGCG 433 ************************************************************ consensus_7383#0 TAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATAT 1139 consensus_7383#1 TAAATGGTGGATGCAACAAAACATATTAAAATTGAACGATTTAGTGGTGTGTAGATATAT 493 ************************************************************ consensus_7383#0 ATATACATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGCAACGTGTTT 1199 consensus_7383#1 ATA--CATGTATGTATGCGCCAGTTATACCATTTAGAGCTGATCTTATGGAAACGTGTTT 551 *** ********************************************* ********* consensus_7383#0 CCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGT 1259 consensus_7383#1 CCTCCTCATTTATTAAGTGTTACTAATTCGATTTTTGCAAATACTACTTCAATTTCGAGT 611 ************************************************************ consensus_7383#0 GTGAAACCCGTTATGCATATTACGATACTAAGAAATACGGAGCCGAACGTGCACACACAC 1319 consensus_7383#1 GTGAAACCCGTTATGCATATTACGATACTAAG---------------------------- 643 ******************************** consensus_7383#0 ACAGGGGGACGGTGCACCACGCGGAGACAGTGACGGAACAGTTCATTATTATAATCCGGT 1379 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 GTCACATCCCGTAGGACCGGAGCTTTCGGACGGACAAAAACTCCTTAAAAGTGTAGCAAT 1439 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 TAATTGCGCAAGTTATGTTGTGTGAGTGTGTGTGTGTGTATCTAGGGGTACAACGTGCAT 1499 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 GCCCTCCTCTCCTGCATATGCCACAACACTGTGCAGATAGTTATTGTACTGTACGAACGA 1559 consensus_7383#1 ------------------------------------------------------------ consensus_7383#0 CCGTAGAACGAGATGATGTATGATGATGATGAAGACAAAGAGTAAAAGATGCA 1612 consensus_7383#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||