These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 887 fasta sequence [GTGACAAACGGTGACTGAGTGTGCAAGCAGCCGAGCTCCTGGGATACCAGTGGCAACGATGCATCCTCCTTCTCGCGGCACGTCTGGGTCCTGATCGGGGCCCGCTTTCTTGTCGGGATTTTCGTGTCCGGCAATGCGGCGACCTCGTACGCGTACCTGGCCGAGTTCCACGGCGAAGCATCCCGGGCGAAGGTGATCTCCTGGGCGGCCATGTTCATGTCGATCGGGCTGATACTGCTGCCGTCGCTCTCCTGGCTCATCATACCGCTGGACGCGCAGCTCGACCTCCGCCTGTTCGGCATGCGGTACGCGATGTGGCGCATCTATCTGCTGCTCTGCTCGCTCGATCTGCTGCTCATCATTGCGGGGCTGCTCTACCTGCCCGAGAGTGGAAAGTTTCTGCTCACCGGCGGCCACCGGGAGAAAGTGGTGCAAACGCTGGCCAAAATCTATCAGCTCAACCGGGGCAAACCGGCGCACACCTTCCCCGTCAAGTCGATCACCCTGGACGCGATCGACAGTGCGTACGCGGACGAGATGCAGCGGCGGTCGAAGCTCGGGCTGCGCTACCTCTGGCAGCAGACGGTGNCCCTGNTCCGGGTGCCGCTGCTCTGCCACACGCTCAAGGCGTCCGTGCTGATGTTCGGCATCTTCGCCACCTCGTCCGGCCTGTTCCTGTGGGTGCCGGACATCCTCAACACGTACGTGCAGCACCAGGATATGAAGCTGTGCGACGTGATTGCGCTGATGCACGCGAACAAAACGGCGGCCCGGTCCGGCGACAGCGTCTGCCCGATCGCAATCAACGCCAACATCTTCCTGATCACGTCCGCGATGGGGGTCGTCTTTCTCGCCTGCTACATCCTGAACGGCTTCATCATCAACCG] [+] EMBL BX623966 [GTGACAAACGGTGACTGAGTGTGCAAGCAGCCGAGCTCCTGGGATACCAGTGGCAACGATGCATCCTCCTTCTCGCGGCACGTCTGGGTCCTGATCGGGGCCCGCTTTCTTGTCGGGATTTTCGTGTCCGGCAATGCGGCGACCTCGTACGCGTACCTGGCCGAGTTCCACGGCGAAGCATCCCGGGCGAAGGTGATCTCCTGGGCGGCCATGTTCATGTCGATCGGGCTGATACTGCTGCCGTCGCTCTCCTGGCTCATCATACCGCTGGACGCGCAGCTCGACCTCCGCCTGTTCGGCATGCGGTACGCGATGTGGCGCATCTATCTGCTGCTCTGCTCGCTCGATCTGCTGCTCATCATTGCGGGGCTGCTCTACCTGCCCGAGAGTGGAAAGTTTCTGCTCACCGGCGGCCACCGGGAGAAAGTGGTGCAAACGCTGGCCAAAATCTATCAGCTCAACCGGGGCAAACCGGCGCACACCTTCCCCGTCAAGTCGATCACCCTGGACGCGATCGACAGTGCGTACGCGGACGAGATGCAGCGGCGGTCGAAGCTCGGGCTGCGCTACCTCTGGCAGCAGACGGTGNCCCTGNTCCGGGTGCCGCTGCTCTGCC ] [+] EMBL BX613466 [ TGCCGTCGCTCGCCTGGCTCATCATACCGCTGGACGCGCAGCTCGACCTCCGCCTGTTCGGCATGCGGTACGCGATGTGGCGCATCTATCTGCTGCTCTGCTCGCTCGATCTGCTGCTCATCATTGCGGGGCTGCTCTACCTGCCCGAGAGTGGAAAGTTTCTGCTCACCGGCGGCCACCGGGAGAAAGTGGTGCAAACGCTGGCCAAAATCTATCAGCTCAACCGGGGCAAACCGGCGCACACCTTCCCCGTCAAGTCGATCACCCTGGACGCGATCGACAGTGCGTACGCGGACGAGATGCAGCGGCGGTCGAAGCTCGGGCTGCGCTACCTCTGGCAGCAGACGGTGCCCCTGTTCCGGGTGCCGCTGCTCTGCCACACGCTCAAGGCGTCCGTGCTGATGTTCGGCATCTTCGCCACCTCGTCCGGCCTGTTCCTGTGGGTGCCGGACATCCTCAACACGTACGTGCAGCACCAGGATATGAAGCTGTGCGACGTGATTGCGCTGATGCACGCGAACAAAACGGCGGCCCGGTCCGGCGACAGCGTCTGCCCGATCGCAATCAACGCCAACATCTTCCTGATCACGTCCGCGATGGGGGTCGTCTTTCTCGCCTGCTACATCCTGAACGGCTTCATCATCAACCG] consensusID : consensus_7384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 863 fasta sequence [ATNGCCGAGNGGTGCCCTGTTCGGGTGCGCTGCTCTGCCACACGCTCAAGGCGTCCGTGCTGATGTTCGGCATCTTCGCCACCTCGTCCGGCCTGTTCCTGTGGGTGCCGGACATCCTCAACACGTACGTGCAGCACCAGGATATGAAGCTGTGCGACGTGATTGCGCTGATGCACGCGAACAAAACGGCGGCCCGGTCCGGCGACAGCGTCTGCCCGATCGCAATCAACGCCAACATCTTCCTGATCACGTCCGCGATGGGGGTCGTCTTTCTCGCCTGCTACATCCTGAACGGCTTCATCATCAACCGGGTCGGCAAGCGGACACTGCTCAACGGTTGGTTCGTGGTGTGCGGTATCTGCGGGCTCGCCGTGCTGTGGACTTCCGATTTCTATCTGACGCTGATACTGATCGCTGCCTTCGTCTCGTCTGGCTGCCTCGGTGGCGTCCTAAGTGCAATATCGGTCGACCTATTTCCGACTAATTACCGGGCAATGGCAATGTGCCTGATTCTGATGACGGGCCGGTTCGGGGCAATGGCCGGCAGCAACATTATCGCCTATCTGCTCACGTACAACTGCAATCTGATCTTCATACTGTTCGGCGGCTCGCTGCTAGTTTGTGCTCTAATTGGAGCAACCTTAACGGAAACGTGACAGGCCAGCTATTCGAAAAATGTTTAATGGCTGCCTGCCCGAACCCCCCCTCTCCCTCCCCTTGGGACACGTGACAGGTGACTTGCAGAGCTGCCCTCCTCCTCCTTCACCAGCTGGAAAGCAGCAGCAGCAGAACCGTGGGCAAAAGTGTTGCCAGCATCAGTAAACCGTCTTGAAGGATCTCTACTCACACACCTGCTTCCAGCC] [+] EMBL AL931203 [ATNGCCGAGNGGTGCCCTGTTCGGGTGCGCTGCTCTGCCACACGCTCAAGGCGTCCGTGCTGATGTTCGGCATCTTCGCCACCTCGTCCGGCCTGTTCCTGTGGGTGCCGGACATCCTCAACACGTACGTGCAGCACCAGGATATGAAGCTGTGCGACGTGATTGCGCTGATGCACGCGAACAAAACGGCGGCCCGGTCCGGCGACAGCGTCTGCCCGATCGCAATCAACGCCAACATCTTCCTGATCACGTCCGCGATGGGGGTCGTCTTTCTCGCCTGCTACATCCTGAACGGCTTCATCATCAACCGGGTCGGCAAGCGGACACTGCTCAACGGTTGGTTCGTGGTGTGCGGTATCTGCGGGCTCGCCGTGCTGTGGACTTCCGATTTCTATCTGACGCTGATACTGATCGCTGCCTTCGTCTCGTCTGGCTGCCTCGGTGGCGTCCTAAGTGCAATATCGGTCGACC ] [+] EMBL BM627159 [ ccGCTTCATCATCAACCGGGTCGGCAAGCGGACACTGCTCAACGGTTGGTTCGTGGTGTGCGGTATCTGCGGGCTCGCCGTGCTGTGGACTTCCGATTTCTATCTGACGCTGATACTGATCGCTGCCTTCGTCTCGTCTGGCTGCCTCGGTGGCGTCCTAAGTGCAATATCGGTCGACCTATTTCCGACTAATTACCGGGCAATGGCAATGTGCCTGATTCTGATGACGGGCCGGTTCGGGGCAATGGCCGGCAGCAACATTATCGCCTATCTGCTCACGTACAACTGCAATCTGATCTTCATACTGTTCGGCGGCTCGCTGCTAGTTTGTGCTCTAATTGGAGCAACCTTAACGGAAACGTGACAGGCCAGCTATTCGAAAAATGTTTAATGGCTGCCTGCCCGAACCCCCCCTCTCCCTCCCCTTGGGACACGTGACAGGTGACTTGCAGAGCTGCCCTCCTCCTCCTTCACCAGCTGGAAAGCAGCAGCAGCAGAACCGTGGGCAAAAGTGTTGCCAGCATCAGTAAACCGTCTTGAAGGATCTCTACTCACACACCTGCTTCCAGCC] consensusID : consensus_7384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 701 fasta sequence [CCG-GGGACGTTGGCACGGCACGATTGGCCGTCGGATAGACCAAACACTTTGGTTGGTGCCGCAGTGACAAACGGTGACTGAGTGTGCAAGCAGCCGAGCTCCTGGGATACCAGTGGCAACGATGCATCCTGCAGCGGACGACCAGCGTCGAGCCGAGGACAGTGTCGGCAACGGTGCGGCGACACACAAATCGGCCGAAATTGTCATCGACCCAGCGCAGGTTGGTGCGCAGAATGGGAGCGCGACGCCCGTCCCGAGTCATACGTACAGCGAAG-CCCTCGCCGTGGTC-GGACAGGGCCGGTTCCACACGCTGCTCCTGTTCATTACCGGCCTCTGCCTGATGAGCGTCGTCAACGAGAC-GGTCAACGTGGGCTTCATCATCTC-GGCCGCCGAGTGCGACCTGGAGCTTAGCTTCAGCGACAAGGGCATACTG--AACGGGGCCGGCTTTAT--GGGCGTGGTGGTCAGCTCGTACGTGTGGGGCTTCCTGTCCGACACGTGGGGCCGCCGCCGGGTACTGCTGCTCGCGTCCTCCGGCGCACTGGTCACCTCCGTGCTGTCCTCCTTCTCGCCGCACGTCTGGGTCCTGATCGGGGCCCGCTTTTCTTGTCGGGATTTTCGTGTCCGGCAATGCGGCGACCTCGTACGCGTACCTGGCCGAGTTCCACGGCGAAGCATCCCCGGGGCGAAGGTGATCTCCTGGG] [+] EMBL BM582838 [CCG GGGACGTTGGCACGGCACGATTGGCCGTCGGATAGACCAAACACTTTGGTTGGTGCCGCAGTGACAAACGGTGACTGAGTGTGCAAGCAGCCGAGCTCCTGGGATACCAGTGGCAACGATGCATCCTGCAGCGGACGACCAGCGTCGAGCCGAGGACAGTGTCGGCAACGGTGCGGCGACACACAAATCGGCCGAAATTGTCATCGACCCAGCGCAGGTTGGTGCGCAGAATGGGAGCGCGACGCCCGTCCCGAGTCATACGTACAGCGAAG CCCTCGCCGTGGTC GGACAGGGCCGGTTCCACACGCTGCTCCTGTTCATTACCGGCCTCTGCCTGATGAGCGTCGTCAACGAGAC GGTCAACGTGGGCTTCATCATCTC GGCCGCCGAGTGCGACCTGGAGCTTAGCTTCAGCGACAAGGGCATACTG AACGGGGCCGGCTTTAT GGGCGTGGTGGTCAGCTCGTACGTGTGGGGCTTCCTGTCCGACACGTGGGGCCGCCGCCGGGTACTGCTGCTCGCGTCCTCCGGCGCACTGGTCACCTCCGTGCTGTCCTCCTTCTCGCCGCACGTCTGGGTCCTGATCGGGGCCCGCTTTTCTTGTCGGGATTTTCGTGTCCGGCAATGCGGCGACCTCGTACGCGTACCTGGCCGAGTTCCACGGCGAAGCATCCCCGGGGCGAAGGTGATCTCCTGGG] [+] EMBL BM577017 [CCGCGGGACGTTGGCACGGCACGATTGGCCGTCGGATAGACCAAACACTTTGGTTGGTGCCGCAGTGACAAACGGTGACTGAGTGTGCAAGCAGCCGAGCTCCTGGGATACCAGTGGCAACGATGCATCCTGCAGCGGACGACCAGCGTCGAGCCGAGGACAGTGTCGGCAACGGTGCGGCGACACACAAATCGGCCGAAATTGTCATCGACCCAGCGCAGGTTGGTGCGCAGAATGGGAGCGCGACGCCCGTCCCGAGTCATACGTACAGCGAAGCCCCTCGCCGTGGTCGGGACAGGGCCGGTTCCACACGCTGCTCCTGTTCATTACCGGCCTCTGCCTGATGAGCGTCGTCAACGAGACGGGTCAACGTGGGCTTCATCATCTCGGGCCGCCGAGTGCGACCTGGAGCTTAGCTTCAGCGACAAGGGCATACTGGAAACGGGGCCGGCTTTATGGGGGCGTGGTGGTCAGCTCGgt ] [+] EMBL BM634837 [ ccgGTTGGCACGGCACGATTGGCCGTCGGATAGACCAAACACTTTGGTTGGTGCCGCAGTGACAAACGGTGACTGAGTGTGCAAGCAGCCGAGCACCTGGGATACCAGTGGCAACGATGCATCCTGCAGCGGACGACCAGCGTCGAGCCGAGGACAGTGTCGGCAACGGTGCGGCGACACACAAATCGGCCGAAATTGTCATCGACCCAGCGCAGGTTGGTGCGCAGAATGGGAGCGCGACGCCCGTCCAGAGTCATACGTACAGCGAAG CCCTCGTCGTGGTC GGACAGGGCCGGTTCCACACGCTGCTCCTGTTCATTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7384#0 -GTGACAAACGGTGACT-----GAGTGTGCAAG-CAGCCGAGCTCCTGGGATACCAGTGG 53 consensus_7384#1 ATNGCCGAGNGGTGCCCTGTTCGGGTGCGCTGCTCTGCCACACGCTCAAGGCGTCCGTGC 60 consensus_7384#2 ------------------------------------------------------------ consensus_7384#0 CAACGAT--GCATCCTCCTTCTCGCGGCACGTCTGGGTCCTGATCGGGGCCCGCTTTCTT 111 consensus_7384#1 TGATGTTCGGCATCTTCGCCACCTCGTCCGGCCT--GTTCCTGTGGGTGCCGGACATCCT 118 consensus_7384#2 ---------CCGGGGACGTTGGCACGGCACGATTG-GCCGTCGGATAGACCAAACACTTT 50 * * * ** * * * * ** * consensus_7384#0 GTCGGGATTTTCGTGTCCGGCAATGCGGCGACCTCGTACG-CGTACCTG-GCCGAGTTCC 169 consensus_7384#1 --CAACACGTACGTGCAGCACCAGGATATGAAGCTGTGCGACGTGATTGCGCTGATGCAC 176 consensus_7384#2 ----GGTTGGTGCCGCAGTGACAAACGGTGACTGAGTGTG---CAAGCA-GCCGAGCTCC 102 * * ** ** * ** ** * consensus_7384#0 ACGGCGAA----GCATCCCGGGCGAAGGTGATCTCCTGGGCGGCCATGTTCA-TGTCGA- 223 consensus_7384#1 GCGAACAAAACGGCGGCCCGGTCCGGCGACAGCGTCTGCCCGATCGCAATCAACGCCAAC 236 consensus_7384#2 TGGGATA---------CCAGTGGCAACGATGCATCCTGCA-GCGGACGACCAGCGTCGA- 151 * * ** * * *** * ** * * * consensus_7384#0 -TCGGGCTGAT-ACTGCTGCC------GTCGCTCTCCTGGCTCATCATACCGCTGGACGC 275 consensus_7384#1 ATCTTCCTGATCACGTCCGCGATGGGGGTCGTCTTTCTCGCCTGCTACATC-CTGAACG- 294 consensus_7384#2 -----GCCGAGGACAGTGTCG----GCAACGGTGCGGCGACACACAAATCGGCCGAAATT 202 * ** ** * ** * * * * * consensus_7384#0 GCAGCTCGACCTCCGCCTGTTCGGCATGCGGTACGCGA-TGTGGCGCATCTATCTGCTGC 334 consensus_7384#1 --GCTTCATCATCAACCGGGTCGGCAAGCGG-ACACTG-CTCAACG-GTTGGTTCG-TGG 348 consensus_7384#2 G-TCATCGACCCAGCGCAGGTTGGTGCGCAGAATGGGAGCGCGACG--CCCGTCCCGAGT 259 ** * * * * ** ** * * ** * * consensus_7384#0 TCTGCTCGCT-CGATCTGCTGCTCATCATTGCGGGGCTGCTCTACCTGCCCGAGAGTGGA 393 consensus_7384#1 TGTGCGGTAT-CTGCGGGCTCGCCGT-GCTGTGGACTTCCGATTTCTATCTGACGCTG-A 405 consensus_7384#2 CATACGTACAGCGAAGCCCTCGCCGTGGTCGGACAGGGCCGGT-TCCACACGCTGCTC-C 317 * * * ** * * * * * * * * consensus_7384#0 AAGTTTCTGCTCACCGGCGGCCACCGGGAGAAAGTGGTGCAAACGCTGGC-CAAAATCTA 452 consensus_7384#1 TACTGATCGCTGCCTTCGTCTCGTCTGGCTGCCTCGGTGGCGTCCTAAGTGCAATATCGG 465 consensus_7384#2 TGTTCATTACCGGCCTCTGCCTGATGAGCGTCGTCAACGAGACGGTCAACGTGGGCTTCA 377 * * * * * * consensus_7384#0 TCAGCTCAACCG----GGGCAAACCGGCGCACACCTTCCCCGTCAAGTCGATCACCCTGG 508 consensus_7384#1 TCGACCTATTTC----CGACTAATTACCGGGCAATG-----GCAATGTGCCTGATTCTGA 516 consensus_7384#2 TCATCTCGGCCGCCGAGTGCGACCTGGAGCTTAGCTTCAGCGACAAGGG---CATACTGA 434 ** * * * * * * * * * *** consensus_7384#0 ACGCGATCGACAGTGCGTACGCGGACGAGATGCAGCGGCGGTCGAAGCTCGGGCTGCGCT 568 consensus_7384#1 TGACGGGCCGGTTCGGGGCAATGGCCGGCA-GCAACATTA-TCGCCTATCTGCTCACG-T 573 consensus_7384#2 ACGGGGCCGGCTTTATGGGCGTGGTGGTCA-GCTCGTACGTGTGGGGCTTCCTGTCCGAC 493 * * * ** * * ** * * ** consensus_7384#0 ACCTCTGGCAGCAGACGGTGNCCCTGNTCCGGGTGCCGCTGCTCTGCCACACGCTCAAGG 628 consensus_7384#1 ACAACTGCAATCTGATCTTCATACTGTTCGGCGGCTCGCTGCTAGTTTGTGCTCTAATTG 633 consensus_7384#2 ACGTGGGGCCGCCGCCG--GGTACTGCT-----GCTCGC-GTCCTCCGGCGCACTGGTCA 545 ** * * * *** * *** * * ** consensus_7384#0 CGTCCGTGCTGATGTTCGGCATCTTCGCCACCTCGTCCGGCCTGTTCCTGTGGGTGCCGG 688 consensus_7384#1 GAGCAACCTTAACGGAAACGTGACAGGCCAGCTATTCGAAAAATGTTTAATGGCTGCCTG 693 consensus_7384#2 CCTCCGTGCTGTCCTCC----TTCTCGCCGCACGTCTGGGTCCTGATCGGGGCCCGCTTT 601 * * *** * ** consensus_7384#0 ACATCCTCAACACGTACGTGCAGCACCAGGATATGAAGCTGTGCGACGTGATTGCGCTGA 748 consensus_7384#1 CCCGAACCCCCCCTCTCCCTCC-CCTTGGGACACGTGACAG-GTGACTTG-CAGAGCTGC 750 consensus_7384#2 TC-TTGTCGGGATTTTCGTGTCCGGCAATGCGGCGACCTCGTACG-CGTACCTG-GCCGA 658 * * * * * * * * * * ** * consensus_7384#0 TGCACGCGAACAAAACGGCGGCCCGGTC-CGGCGACAGCGTCTGCCCGATCGCAATCAAC 807 consensus_7384#1 CCTCCTCCTCCTTCAC--CAGCTGGAAAGCAGCAGCAGCAGAACCGTGGGCAAAAGTGTT 808 consensus_7384#2 GTTCCACGG-CGAAGCATC--CCCGG----GGCGAAGGTGATCTCCTGGG---------- 701 * * * * * * * ** * * * consensus_7384#0 GCCAACATCTTCCTGATCACGTCCGCGATGGGGGTCGTCTTTCTCGCCTGCTACATCCTG 867 consensus_7384#1 GCCAGCATCAG--TAAAC-CGTCT-TGAAGGATCTCTACTCACACACCTGCTTCCAGCC- 863 consensus_7384#2 ------------------------------------------------------------ consensus_7384#0 AACGGCTTCATCATCAACCG 887 consensus_7384#1 -------------------- consensus_7384#2 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||