These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1150 fasta sequence [CTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAA-AGCGTAGCTGTTCACGTTCGATAATGGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGGCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGACGGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGAGCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATCGTTTGTTCGTGTCAGGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTACGCAAAGCGTTTGTGTACGGGAATTGTAGCATTGTAAATCCGAGTATAGAGCTATAAATTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTACCACGCTAAGGAGCCACAATCATTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGTATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAGCATTTCGCTTTTTATCCTTGTTTTAACCACATTATTTGTTACTTTTTATTCGGCGATCTTTTAACGTCTAACGAAGATCGCCTAGCTACTAGGCTATATTAATATTTCTTAGTTTGATTTAGCAAACAGCAAGTGCAAAACGAAAAAGTGGATAAACTTATGCCATGTCGTGGATCGGTGGGAGCTAAGGCTGAGCAGGATACGGGAAGGGATCATCGTGGAAAGGGATAAGGAAGCAACGTGGAGCGTGGATGCGCTATGTGTGATAGAATACAGATCAAGCTGATTTGAAGGTTTTGACTATAAGTGACATAGTTATATAGAAACATTTGCGTGTGGTTCATTGTGCGGACGGCACACTTCACGCGTTGATGGAAAGCAATATTTTTCGCCCGTTTTTCCTCCTCCCTATCTCTCTCTCTCTCTATTCGGGAT] [+] EMBL BX628881 [CTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAA AGCGTAGCTGTTCACGTTCGATAATGGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGGCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGACGGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGAGCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATCGTTTGTTCGTGTCAGGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTACGCAAAGCGTTTGTGTACGGGAATTGTAGCATTGTAAATCCGAGTATAGAGCTATAAATTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTACCACGCTAAGGAGCCACAATCATTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGTATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAGCATTTCGCTTTTTATC ] [+] EMBL BX619727 [CTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAGAGCGTAGCTGTTCACGTTCGATAATGGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGGCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGACGGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGAGCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATCGTTTGTNNGTGTCANGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTACGCAAAGCGTTTGTGTACGGNAATTGTAGCATNGTAAATCCGAGTATAGAGCTATAAATGGTCTTGTAGAGAACAGGCAAACACAACCCAGTCTACCn ] [+] EMBL BX613640 [ CCGCGAGGCAAACCCATTTCGTCATTGGATGAACGCTAGCTCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGACGGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGAGCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATCGTTTGTTCGTGTCAGGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTACGCAAAGCGTTTGTGTACGGGAATTGTAGCATTTTAAATCCGAGTATAGAGCTATAAATTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTACCACGCTAAGGAGCCACAATCATTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGTATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAGCATTTCGCTTTTTATCCTTGTTTTAACCACATTATTTGTTACTTTTTATTC ] [+] EMBL BX615986 [ TTGTAAATCCGAGTATAGAGCTATAAATTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTACCACGCTAAGGAGCCACAATCATTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGTATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAGCATTTCGCTTTTTATCCTTGTTTTAACCACATTATTTGTTACTTTTTATTCGGCGATCTTTTAACGTCTAACGAAGATCGCCTAGCTACTAGGCTATATTAATATTTCTTAGTTTGATTTAGCAAACAGCAAGTGCAAAACGAAAAAGTGGATAAACTTATGCCATGTCGTGGATCGGTGGGAGCTAAGGCTGAGCAGGATACGGGAAGGGATCATCGTGGAAAGGGATAAGGAAGCAACGTGGAGCGTGGATGCGCTATGTGTGATAGAATACAGATCAAGCTGATTTGAAGGTTTTGACTATAAGTGACATAGTTATATAGAAACATTTGCGTGTGGTTCATTGTGCGGACGGCACACTTCACGCGTTGATGGAAAGCAATATTTTTCGCCCGTTTTTCCTCCTCCCTATCTCTCTCTCTCTCTATTCGGGAT] consensusID : consensus_7394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 934 fasta sequence [CCGCGGACGCGTGGGTGCTGATCCAGCAGCACAACCTTACCTACCCGAACATCTACGAGAAGCTGTACTCGATGTTCGAGCCGGAAATTTTCCACACCAAATTCAAGGCCCGGCTGTTCTATCTGGCCGACATCTTCCTTAGCTCTAGTCATCTGCCGGAGGGTTTGGTGGCCGCGTTTGTGAAGCGGCTGGCACGGCTGTCGCTGATCGCACCACCGCAGGATATTGTCATCATACTGCGCTTCATCGGCAACCTGATCCTGCGCCATCCGGCCCTGAAGCGGCTGATCTTTCATCCGACCGGCGGCGAGGCGTCGAGCGATCCGTACGTGATGGAGGAGCGCGACCCGATGAAATCGAAAGCGCTCGAAAGCTCGCTGTGGGAGATTGCGGCCCTGCAAAACCACGTACTGCCATCGGTCGCTTCGGCGGCACGCTTCATCTCGAATCCACTTCCAAGCGTCGAATGGGACCTGTCCGAGGTGCTAGAGATTAGTGAGAACGATATTTTCCACAAAGAAATGATGTCGAAAACGCAGGATTTCTTTGTTAATATCGATCGTCCAACGGGTATGTTCGGATACTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAAGCGTAGCTGTTCACGTTCGATAATGGGTGAGTTTGCTGCGTTCGGCGAAACAACGTCTGTCGCGCGGTGATATGTCCTACCTATACTTTCCAATGCTGCGTCGTCCTGGTCGTTCTCATTTTTCGGATATGAGCAGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGTCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTT] [+] EMBL BM577728 [CCGCGGACGCGTGGGTGCTGATCCAGCAGCACAACCTTACCTACCCGAACATCTACGAGAAGCTGTACTCGATGTTCGAGCCGGAAATTTTCCACACCAAATTCAAGGCCCGGCTGTTCTATCTGGCCGACATCTTCCTTAGCTCTAGTCATCTGCCGGAGGGTTTGGTGGCCGCGTTTGTGAAGCGGCTGGCACGGCTGTCGCTGATCGCACCACCGCAGGATATTGTCATCATACTGCGCTTCATCGGCAACCTGATCCTGCGCCATCCGGCCCTGAAGCGGCTGATCTTTCATCCGACCGGCGGCGAGGCGTCGAGCGATCCGTACGTGATGGAGGAGCGCGACCCGATGAAATCGAAAGCGCTCGAAAGCTCGCTGTGGGAGATTGCGGC ] [+] EMBL BM641036 [ ccgGAGGCGTCGAGCGATCCGTACGTGATGGAGGAGCGCGACCCGATGAAATCGAAAGCGCTCGAAAGCTCGCTGTGGGAGATTGCGGCCCTGCAAAACCACGTACTGCCATCGGTCGCTTCGGCGGCACGCTTCATCTCGAATCCACTTCCAAGCGTCGAATGGGACCTGTCCGAGGTGCTAGAGATTAGTGAGAACGATATTTTCCACAAAGAAATGATGTCGAAAACGCAGGATTTCTTTGTTAATATCGATCGTCCAACGGGTATGTTCGGATACTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAAGCGTAGCTGTTCACGTTCGATAATGGGTGAGTTTGCTGCGTTCGGCGAAACAACGTCTGTCGCGCGGTGATATGTCCTACCTATACTTTCCAATGCTGCGTCGTCCTGGTCGTTCTCATTTTTCGGATATGAGCAGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGTCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTT] consensusID : consensus_7394#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [CTAGCCGAATTCGGCACGAGGCCTGATCCTGCGCCATCCGGCCCTGAAGCGGCTGATCTTTCACCCGACCGGGCGNNGAGGCGTCGAGNGATCCGTANCGTGATGGAGGAGNCGCGAACCCGATGAAATCGAAAGCGCTCGAAAGNCTCGNCTNNGGGAGANTTGNCGGNCCCTGGCAAAAACCNCNNAACTNNCATCGGNTCGCTTCGGNCGNNAACGACTTCNTCTCGAAATCCANCTTCCCNANGCNGNTCCAAATGGGGAACCCTGNTCCGAGGGTGCCTAGANGAATTAG] [+] EMBL BX629215 [CTAGCCGAATTCGGCACGAGGCCTGATCCTGCGCCATCCGGCCCTGAAGCGGCTGATCTTTCACCCGACCGGGCGNNGAGGCGTCGAGNGATCCGTANCGTGATGGAGGAGNCGCGAACCCGATGAAATCGAAAGCGCTCGAAAGNCTCGNCTNNGGGAGANTTGNCGGNCCCTGGCAAAAACCNCNNAACTNNCATCGGNTCGCTTCGGNCGNNAACGACTTCNTCTCGAAATCCANCTTCCCNANGCNGNTCCAAATGGGGAACCCTGNTCCGAGGGTGCCTAGANGAATTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7394#1 --------------------------------------------CCGCGGACGCGTGGGT 16 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 CTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAAGCGTAGCTGTTCACGT 60 consensus_7394#1 GCTGATCCAGCAGCACAACCTTACCTACCCGAAC----ATCTACGAGAAGCTGTACTCGA 72 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 TCGATAATGGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTG 120 consensus_7394#1 TGTTCGAGCCGGAAATTTTCCACACCAAATTCAAGGCCCGGCTGTTCTATCTGGCCGACA 132 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 CTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACC--GCGAGGCAAACCCATT 178 consensus_7394#1 TCTTCCTTAGCTCTAGTCATCTGCCGGAGGGTTTGGTGGCCGCGTTTGTGAAGCGGCTGG 192 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 TCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCT 238 consensus_7394#1 CACGGCTGTCGCTGATCGCACCACCGCAGGATATTGTCATCATACTGCGCTTCATCGGC- 251 consensus_7394#2 ----------------------------------------CTAGCCGAATTCGGCACGA- 19 consensus_7394#0 TTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGAC 298 * consensus_7394#1 AACCTGATCCTGCGCCATC------CGGCCCTGAAGCGGCTGATCTTTCATCCGACCGG- 304 consensus_7394#2 GGCCTGATCCTGCGCCATC------CGGCCCTGAAGCGGCTGATCTTTCACCCGACCGGG 73 consensus_7394#0 GGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGA 358 * * ** * * * **** * ** ** ** * * * * consensus_7394#1 CGGCGAGGCGTCGAGC--GATCCGTAC-GTGATGGAGGAGC--GCGA-CCCGATGAAATC 358 consensus_7394#2 CGNNGAGGCGTCGAGN--GATCCGTANCGTGATGGAGGAGNC-GCGAACCCGATGAAATC 130 consensus_7394#0 GCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATC 418 ** * * ** * ***** ** * ** *** *** consensus_7394#1 GAAAGCGCTCGA-AAGCTC--GCTGTGGGAGATT--GCGGCCCT--GCAAAA-CCACGTA 410 consensus_7394#2 GAAAGCGCTCGA-AAGNCTCGNCTNNGGGAGANTTGNCGGNCCCTGGCAAAAACCNCNNA 189 consensus_7394#0 GTTTGTTCGTGTCAGGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTA 478 * * * * * * * ** * * *** * ** * consensus_7394#1 -CTGCCATCGGT-CGCTTCGGCGGCACGCTTCATCTCGAATCCACTTCCAAGCGTCGAAT 468 consensus_7394#2 ACTNNCATCGGNTCGCTTCGGNCGNNAACG--ACTTCNTCTCGAAATCCANCTTCCCNAN 247 consensus_7394#0 --CGCAAAGCGTTTGTGTACGGGAATTGTAGCATTGTAAATCCGAGTATAGAGCTATAAA 536 * * * * * * ** * * * consensus_7394#1 GGGACCTGTCCGAGGTGCTAGAGATTAGTGAGAACGATATTTTCCACAAAGAAATGATGT 528 consensus_7394#2 G----CNGNTCCAAATGGGGAACCCTGNTCCGAGGG-----TGCCTAGANGAATTAG--- 295 consensus_7394#0 TTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTAC-CACGCTAAGGAGCCACAATCA 595 * * * * consensus_7394#1 CGAAAACGCAGGATTTCTTTGTTAATATCGATCGTCCAA--------CGGGTATGTTCGG 580 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 TTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGT 655 consensus_7394#1 ATACTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAAGCGTAGCTGTTCA 640 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 ATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAG 715 consensus_7394#1 CGTTCGA----TAATGGGTGAGTTTGCTGCGTTCGGCGAAACAACGTCTGTCGCGCGGTG 696 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 CATTTCGCTTTTTATCCTTGTTTTAACCACATTATTTGTTACTTTTTATTCGGCGATCTT 775 consensus_7394#1 ATATGTCCTACCTATACTTTCCAATGCTGCGTCGTCCTGGTCGTTCTCATTTTTCGGATA 756 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 TTAACGTCTAACGAAGATCGCCTA-GCTACTAGGCTATATTAATATTTCTTAGTTTGATT 834 consensus_7394#1 TGAGCAGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTT 816 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 TAGCAAACAGCAAGTGCAAAACGAAAAAGTGGATAAACTTATGCCATGTCGTGGATCGGT 894 consensus_7394#1 ACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGTCAAACCCATTTCGTC 876 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 GGGAGCTAAGGC-TGAGCAGGATACGGGAAGGGATCATCGTGGAAAGGGATAAGGAAGCA 953 consensus_7394#1 ATTGGATGAACGCTAGCGCTGAAAGAGA---AGATGGCATCTTATTTATTTGAATTCTTT 933 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 ACGTGGAGCGTGGATGCGCTATGTGTGATAGAATACAGATCAAGCTGATTTGAAGGTTTT 1013 consensus_7394#1 T----------------------------------------------------------- 934 consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 GACTATAAGTGACATAGTTATATAGAAACATTTGCGTGTGGTTCATTGTGCGGACGGCAC 1073 consensus_7394#1 ------------------------------------------------------------ consensus_7394#2 ------------------------------------------------------------ consensus_7394#0 ACTTCACGCGTTGATGGAAAGCAATATTTTTCGCCCGTTTTTCCTCCTCCCTATCTCTCT 1133 consensus_7394#1 ----------------- consensus_7394#2 ----------------- consensus_7394#0 CTCTCTCTATTCGGGAT 1150 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||