These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 861 fasta sequence [TGGAGTGCAATCCGTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG-AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA-GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTGTAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCATGTGCCCGAGCGG] [+] EMBL CNS0934C [TGGAGTGCAATCCGTTCGCTCGTGGCGTGTGTAA A AACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGATCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGCCTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGAAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTGTAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCATGTGCCCGAGCGG] [+] EMBL BX629069 [ GTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCT ] [+] EMBL BM589957 [ cCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTCTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGGCCG ] [+] EMBL BM594676 [ ccgGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTA ] consensusID : consensus_7402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 730 fasta sequence [GTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTACCTGTTTCACCGCGATCGGATCGCA] [+] EMBL BX617538 [GTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTACCTGTTTCACCGCGATCGGATCGCA] [+] EMBL BX618962 [ AGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGC ] [-] EMBL CNS0934D [ AGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAAATATCGTCAATGAGCAGCAAAGCGTTGATGAGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7402#0 TGGAGTGCAATCCGTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGG 60 consensus_7402#1 ------------------------------GTAACACAACGGTAGCAATTTGGTAACTGG 30 ****************************** consensus_7402#0 CTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATAC 120 consensus_7402#1 CTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATAC 90 ********* ************************************************** consensus_7402#0 ATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCC 180 consensus_7402#1 ATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCC 150 ************************************************************ consensus_7402#0 GGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCC 240 consensus_7402#1 GGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCC 210 ************************************************************ consensus_7402#0 GACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCT 300 consensus_7402#1 GACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCT 270 ************************************************************ consensus_7402#0 GTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGA 360 consensus_7402#1 GTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGA 330 ************************************************************ consensus_7402#0 AATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTG 420 consensus_7402#1 AATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTG 390 ************************************************************ consensus_7402#0 CAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAA 480 consensus_7402#1 CAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAA 450 ************************************************************ consensus_7402#0 CGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCC 540 consensus_7402#1 CGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCC 510 ************************************************************ consensus_7402#0 CAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA 600 consensus_7402#1 CAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA 570 ************************************************************ consensus_7402#0 GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGC 660 consensus_7402#1 GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGC 630 ************************************************************ consensus_7402#0 AGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGA 720 consensus_7402#1 AGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGA 690 ************************************************************ consensus_7402#0 CGAACGCTTCGTCTTTCC-CAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTG 779 consensus_7402#1 CGAACGCTTCGTCTACCTGTTTCACCGCGATCGGAT-CGCA------------------- 730 ************** * ** * * * * * * consensus_7402#0 TAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 839 consensus_7402#1 ------------------------------------------------------------ consensus_7402#0 AGGGCCCCATGTGCCCGAGCGG 861 consensus_7402#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||