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Anopheles gambiae
cluster # 7402 cluster # 7402       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7402#0 length = 861 sequences # 4  
consensus_7402#1 length = 730 sequences # 3  

consensusID : consensus_7402#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 861
fasta sequence
                              [TGGAGTGCAATCCGTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG-AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA-GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTGTAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCATGTGCCCGAGCGG]

[+] EMBL CNS0934C             [TGGAGTGCAATCCGTTCGCTCGTGGCGTGTGTAA A AACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGATCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGCCTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGAAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTGTAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCATGTGCCCGAGCGG]
[+] EMBL BX629069             [             GTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCT                                                                                                                                     ]
[+] EMBL BM589957             [               cCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTCTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGGCCG                                                                                                                                                                                                                                                                ]
[+] EMBL BM594676             [                                                           ccgGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGG AACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTTTCCCAACATTACCACCAAGTA                                                                                                         ]


>consensus_7402#0 TGGAGTGCAATCCGTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGG CTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATAC ATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCC GGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCC GACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCT GTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGA AATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTG CAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAA CGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCC CAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGC AGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGA CGAACGCTTCGTCTTTCCCAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTGT AGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA GGGCCCCATGTGCCCGAGCGG



consensusID : consensus_7402#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 730
fasta sequence
                              [GTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTACCTGTTTCACCGCGATCGGATCGCA]

[+] EMBL BX617538             [GTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTACCTGTTTCACCGCGATCGGATCGCA]
[+] EMBL BX618962             [             AGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGCAGC                                                                                                 ]
[-] EMBL CNS0934D             [                                                                                                                                            AGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAAATATCGTCAATGAGCAGCAAAGCGTTGATGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]


>consensus_7402#1 GTAACACAACGGTAGCAATTTGGTAACTGGCTGGCGCAAGATGACTTGGAAACGACCGGA ACATATTCCATACCCGTCCGTATGGCATACATTCCAAGCCAAGGATACGGAGAGCGATCA AGTGGTCACCTACCGGGTGCAGGATCTTCCGGAGGAACGCTTTGAAGAAGCGATCGCGCA CATGATGGAATACTTCGTGTACGATGAGCCGACGTGCCGTGCAAAAGATATCGTCAATGA GCAGCAAAGCGTTGATGAGATTGCCGACCTGTGGCGTGAATTCGTGAAGCTGCGTCTTGT GCTCGTGTGTTTCAAGGAAGGCAGCGATGAAATTGCCGGCATGAACATGCTGTACGTTTC ACAGCAAAGTGACAAGGAAGAGTATCAGTGCAAGGGAAGCGTTTGGCGATGCATCTACGA TCTTGTCGATTATACGATGAAGAAGGCAAACGTCTACGAGCGATACGGGGTCGACAAATA TCTTGGCGCAATGGGACTGTCGGTGGCGCCCAACTACCGTGGACGGGGCATAGCCACTGA AATTCTGCGTGCGCGCATTCCTCTGTGCAAGGCCGTTGGTTTGCCCCTAACATCCACCTG TTTCACCGCGATCGGATCGCAAGTAGCAGCAGCAAAGGCCGGTTATGAGGAAACGTACGT GGTGTCGTACGAAGATATGGCCAAGGTGGACGAACGCTTCGTCTACCTGTTTCACCGCGA TCGGATCGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7402#0      TGGAGTGCAATCCGTTCGCTCGGGGAGTGTGTAACACAACGGTAGCAATTTGGTAACTGG 60
consensus_7402#1      ------------------------------GTAACACAACGGTAGCAATTTGGTAACTGG 30
                                                    ******************************

consensus_7402#0      CTGGCGCAAAATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATAC 120
consensus_7402#1      CTGGCGCAAGATGACTTGGAAACGACCGGAACATATTCCATACCCGTCCGTATGGCATAC 90
                      ********* **************************************************

consensus_7402#0      ATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCC 180
consensus_7402#1      ATTCCAAGCCAAGGATACGGAGAGCGATCAAGTGGTCACCTACCGGGTGCAGGATCTTCC 150
                      ************************************************************

consensus_7402#0      GGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCC 240
consensus_7402#1      GGAGGAACGCTTTGAAGAAGCGATCGCGCACATGATGGAATACTTCGTGTACGATGAGCC 210
                      ************************************************************

consensus_7402#0      GACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCT 300
consensus_7402#1      GACGTGCCGTGCAAAAGATATCGTCAATGAGCAGCAAAGCGTTGATGAGATTGCCGACCT 270
                      ************************************************************

consensus_7402#0      GTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGA 360
consensus_7402#1      GTGGCGTGAATTCGTGAAGCTGCGTCTTGTGCTCGTGTGTTTCAAGGAAGGCAGCGATGA 330
                      ************************************************************

consensus_7402#0      AATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTG 420
consensus_7402#1      AATTGCCGGCATGAACATGCTGTACGTTTCACAGCAAAGTGACAAGGAAGAGTATCAGTG 390
                      ************************************************************

consensus_7402#0      CAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAA 480
consensus_7402#1      CAAGGGAAGCGTTTGGCGATGCATCTACGATCTTGTCGATTATACGATGAAGAAGGCAAA 450
                      ************************************************************

consensus_7402#0      CGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCC 540
consensus_7402#1      CGTCTACGAGCGATACGGGGTCGACAAATATCTTGGCGCAATGGGACTGTCGGTGGCGCC 510
                      ************************************************************

consensus_7402#0      CAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA 600
consensus_7402#1      CAACTACCGTGGACGGGGCATAGCCACTGAAATTCTGCGTGCGCGCATTCCTCTGTGCAA 570
                      ************************************************************

consensus_7402#0      GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGC 660
consensus_7402#1      GGCCGTTGGTTTGCCCCTAACATCCACCTGTTTCACCGCGATCGGATCGCAAGTAGCAGC 630
                      ************************************************************

consensus_7402#0      AGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGA 720
consensus_7402#1      AGCAAAGGCCGGTTATGAGGAAACGTACGTGGTGTCGTACGAAGATATGGCCAAGGTGGA 690
                      ************************************************************

consensus_7402#0      CGAACGCTTCGTCTTTCC-CAACATTACCACCAAGTATGTAAAGTGTATGTCCAAACGTG 779
consensus_7402#1      CGAACGCTTCGTCTACCTGTTTCACCGCGATCGGAT-CGCA------------------- 730
                      **************  *     **   * * *   *  * *                   

consensus_7402#0      TAGAATAAAGCCAATTTGAGAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 839
consensus_7402#1      ------------------------------------------------------------
                                                                                  

consensus_7402#0      AGGGCCCCATGTGCCCGAGCGG 861
consensus_7402#1      ----------------------
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)